View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7881_low_8 (Length: 296)

Name: NF7881_low_8
Description: NF7881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7881_low_8
NF7881_low_8
[»] chr4 (9 HSPs)
chr4 (7-280)||(23607113-23607388)
chr4 (7-87)||(49210983-49211062)
chr4 (7-80)||(2574138-2574211)
chr4 (7-87)||(5036048-5036128)
chr4 (122-166)||(49210920-49210964)
chr4 (6-104)||(35382451-35382550)
chr4 (122-181)||(39055025-39055084)
chr4 (121-166)||(1586327-1586372)
chr4 (7-87)||(43968737-43968816)
[»] chr2 (6 HSPs)
chr2 (7-181)||(11921804-11921979)
chr2 (7-89)||(26312426-26312506)
chr2 (7-104)||(34374986-34375084)
chr2 (7-84)||(32887691-32887767)
chr2 (122-166)||(14773129-14773173)
chr2 (7-87)||(45135717-45135797)
[»] chr8 (17 HSPs)
chr8 (20-98)||(1155242-1155321)
chr8 (7-87)||(6519131-6519211)
chr8 (122-181)||(37673966-37674025)
chr8 (20-104)||(28557183-28557268)
chr8 (7-87)||(9604591-9604671)
chr8 (129-165)||(17732518-17732554)
chr8 (7-87)||(28575355-28575435)
chr8 (24-87)||(14426226-14426289)
chr8 (15-104)||(28540608-28540698)
chr8 (39-104)||(5217207-5217273)
chr8 (7-65)||(9134128-9134186)
chr8 (7-104)||(23982182-23982279)
chr8 (7-84)||(5535882-5535959)
chr8 (15-80)||(31226566-31226631)
chr8 (121-157)||(4797436-4797472)
chr8 (125-181)||(9133680-9133736)
chr8 (7-87)||(28567762-28567842)
[»] chr3 (6 HSPs)
chr3 (8-164)||(35539439-35539597)
chr3 (7-106)||(55272743-55272843)
chr3 (7-87)||(46006166-46006246)
chr3 (7-86)||(26085023-26085102)
chr3 (7-89)||(36902412-36902494)
chr3 (122-166)||(7885822-7885866)
[»] chr7 (5 HSPs)
chr7 (7-89)||(23156329-23156411)
chr7 (9-87)||(23802224-23802301)
chr7 (7-87)||(43302207-43302289)
chr7 (7-87)||(36482095-36482175)
chr7 (7-87)||(46748116-46748196)
[»] chr1 (6 HSPs)
chr1 (12-104)||(40287079-40287172)
chr1 (15-84)||(36297941-36298010)
chr1 (20-87)||(27544327-27544394)
chr1 (7-87)||(11120508-11120587)
chr1 (7-87)||(13983993-13984073)
chr1 (131-183)||(27544230-27544282)
[»] chr6 (5 HSPs)
chr6 (122-165)||(7269859-7269902)
chr6 (122-181)||(21941136-21941195)
chr6 (131-166)||(31103619-31103654)
chr6 (21-87)||(7694026-7694092)
chr6 (7-87)||(32658514-32658593)
[»] chr5 (1 HSPs)
chr5 (121-166)||(33494941-33494986)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 23607388 - 23607113
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactcgggtcttatgagacctt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23607388 taacattttatctttacattttaatttttcaatattaaaagagtgatggtcccgcttaagattggaggtcttaagtaagactcgggtcttatgagaccct 23607289  T
Q  107 nnnnnnnnntatctacaatggagata-cctaatagatatcgggtcttaaatggttaagaccgtctcattagagatgatttgttctcttcttttttaggat 205  Q
             | || |||||||||||| |||||||| |||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||    
T  23607288 gaaaaagattctccacaatggagatatcctaataggtatcgggtcttaaatggttaagatatttccattagagatgatttgttctcttcttttttaggat 23607189  T
Q  206 gtagtttatggttttttgttgggttgaatacccc-tatacttctcttaattaattagaaggaaaaatactatttgt 280  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23607188 gtagtttatggttttttgttgggttgaataccccttatacttctcttaattaattagaaggaaaaatactatttgt 23607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 49211062 - 49210983
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| |||||||||||||||| ||||||||||||| || |||||||||||| | | |||||||||||||||||    
T  49211062 taactttatatcattacattttaattttttaatattaaaagagcgaggatcccgcttaaaaat-gaggtcttaagtaagac 49210983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 2574138 - 2574211
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaa 80  Q
    ||||||| |||| |||||||| ||||||| ||| |||||||||||  ||||||||||||||||||| |||||||    
T  2574138 taactttatatcattacatttcaattttttaatgttaaaagagtgtggatcccgcttaagattggaagtcttaa 2574211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 5036048 - 5036128
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||   |||||||||| ||||  |||||||| ||||||    
T  5036048 taactttatatcattacatttcaattttttaatattaaaagagtgagagtcccgcttaaaattgagggtcttaattaagac 5036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 49210964 - 49210920
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagacc 166  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||    
T  49210964 caatggaggtacctaatagatatcgggtcttaactggttatgacc 49210920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 35382451 - 35382550
Alignment:
Q  6 ctaactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactc-gggtcttatgagacc 104  Q
    |||||||| |||| ||| |||| ||||||| |||||||||||||||  | |||||||||| | ||  |||||||||||| || | ||||||||| |||||    
T  35382451 ctaactttatatcattatatttcaatttttaaatattaaaagagtgtgggtcccgcttaaaagtgagggtcttaagtaaaaccctgggtcttataagacc 35382550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 39055084 - 39055025
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatg 181  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||| || |||| ||||||    
T  39055084 caatggagatacctaataggtaccgggttttaaatgtttaagaccctcccattggagatg 39055025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 1586372 - 1586327
Alignment:
Q  121 acaatggagatacctaatagatatcgggtcttaaatggttaagacc 166  Q
    ||||||||| |||||||||| || ||| ||||||||||||||||||    
T  1586372 acaatggaggtacctaataggtaccggatcttaaatggttaagacc 1586327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 43968816 - 43968737
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| ||||  || |||||||||||| |||||||||||||||  | ||| |||||| | |||| ||||||||||||||    
T  43968816 taactttatatcactatattttaattttttaatattaaaagagtgtgggtcctgcttaaaagtgga-gtcttaagtaagac 43968737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 11921979 - 11921804
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatga-tcccgcttaagattggaggtcttaagtaaga-ctcgggtcttatgagacc 104  Q
    ||||||| |||| ||| ||| |||||||| ||||||||||| ||| ||| |||||||||||||||| |||||||||||||| | |||||||||| |||||    
T  11921979 taactttatatcattagattctaattttttaatattaaaagtgtg-tgagtcccgcttaagattgggggtcttaagtaagaccccgggtcttataagacc 11921881  T
Q  105 ttnnnnnnnnntatctacaatggagatacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatg 181  Q
     |         | ||  |||||||| |||||||||| |||||||||||||||| |||||||| || |||| ||||||    
T  11921880 ctaaaaaagtttctccccaatggaggtacctaataggtatcgggtcttaaatgtttaagaccctcccattggagatg 11921804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 26312506 - 26312426
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactc 89  Q
    ||||||| | || ||||||||  |||||| ||||||| |||||||  |  ||||||||||||||| |||||||||||||||||    
T  26312506 taactttatgtcattacatttctattttttaatattagaagagtgtgg--cccgcttaagattgggggtcttaagtaagactc 26312426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 34375084 - 34374986
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagatt-ggaggtcttaagtaaga-ctcgggtcttatgagacc 104  Q
    ||||||| |||  |||||||| ||||||| |||||||||| ||||||||| || |||| |||| || |||||||||||||| ||| |||||||| |||||    
T  34375084 taactttatattattacatttcaattttt-aatattaaaaaagtgatgattccacttatgatttgggggtcttaagtaagacctcaggtcttataagacc 34374986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 32887691 - 32887767
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaa 84  Q
    ||||||| |||  |||||||||||||||| |||||||||||||||  | ||||  |||||||| ||| ||||||||||    
T  32887691 taactttatattattacattttaattttttaatattaaaagagtgtgggtcccaattaagatt-gagatcttaagtaa 32887767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 14773129 - 14773173
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagacc 166  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||    
T  14773129 caatgaagatacctaatagatatcagatcttaaatgtttaagacc 14773173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 45135797 - 45135717
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||| | || || |||||||||||||||  | || ||||||| | |||||||||||||||||||    
T  45135797 taactttatatcattatatttcagttatttaatattaaaagagtgcgggtctcgcttaaaagtggaggtcttaagtaagac 45135717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 1155242 - 1155321
Alignment:
Q  20 ttacattttaatttttcaatattaaaagagtgatga-tcccgcttaagattggaggtcttaagtaaga-ctcgggtcttat 98  Q
    |||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  1155242 ttacatttcaattttttaatattaaaagagtg-tgagtcccgcttaagattggaggtcttaagtaagacctcgggtcttat 1155321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 6519131 - 6519211
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| |||||||| ||||||| |||| ||||||||||  |||||||||||| |  ||||||||||||||||||    
T  6519131 taactttatatcattacatttcaattttttaatactaaaagagtgcggatcccgcttaaaagcggaggtcttaagtaagac 6519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 37673966 - 37674025
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatg 181  Q
    ||||||||||||||||||| || || |||||||||| |||||||| || |||||||||||    
T  37673966 caatggagatacctaataggtaccgagtcttaaatgtttaagaccctcccattagagatg 37674025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 28557268 - 28557183
Alignment:
Q  20 ttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactcg-ggtcttatgagacc 104  Q
    |||||||| ||||||| |||||||||||||||  |||||| | ||||||||  |||||||||| |||| || |||||||| |||||    
T  28557268 ttacatttcaattttttaatattaaaagagtgtggatcccacataagattgagggtcttaagtgagacccgtggtcttataagacc 28557183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 9604591 - 9604671
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||| ||||||| || ||||||||||||| |||||||||||| | ||| | |||||| ||||||    
T  9604591 taactttatatcattagatttcaattttttaacattaaaagagtgaggatcccgcttaaaaatggggatcttaaataagac 9604671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 17732518 - 17732554
Alignment:
Q  129 gatacctaatagatatcgggtcttaaatggttaagac 165  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17732518 gatacctaatacatatcgggtcttaaatggttaagac 17732554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 28575435 - 28575355
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||| ||||||| ||||||||||||| |  | |||||||||||||||  |||||||||| ||||    
T  28575435 taactttatatcattatatttcaattttttaatattaaaagagagtgggtcccgcttaagattgagggtcttaagtgagac 28575355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 14426226 - 14426289
Alignment:
Q  24 attttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    |||||||||||| |||||||||||||||  |||||| ||||| | ||| |||||||| ||||||    
T  14426226 attttaattttttaatattaaaagagtgtggatcccacttaaaagtgggggtcttaaataagac 14426289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 28540698 - 28540608
Alignment:
Q  15 tatctttacattttaatttttcaatattaaaagagtgatga-tcccgcttaagattggaggtcttaagtaagactcg-ggtcttatgagacc 104  Q
    |||| |||||||| ||||||| ||||||||||||||| ||| |||||| ||||||||  | |||||||| ||||||| |||||||| |||||    
T  28540698 tatcattacatttcaattttttaatattaaaagagtg-tgagtcccgcataagattgaggttcttaagtgagactcgtggtcttataagacc 28540608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 5217273 - 5217207
Alignment:
Q  39 tattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac-tcgggtcttatgagacc 104  Q
    |||||||||||||| | |||||||||| | ||| ||||||| ||||||| ||||||||||| |||||    
T  5217273 tattaaaagagtgagggtcccgcttaaaagtgggggtcttaggtaagacttcgggtcttataagacc 5217207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 9134186 - 9134128
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaa 65  Q
    ||||||| |||| ||| |||| ||||||| |||||||||||||||  ||||||||||||    
T  9134186 taactttatatcattatatttcaattttttaatattaaaagagtgcggatcccgcttaa 9134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 23982279 - 23982182
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaaga-ctcgggtcttatgagacc 104  Q
    ||||||| |||| ||| |||| ||||||| |||||||||| |||| || |||||||||| | ||  |||||||||||||| | |||||||||| |||||    
T  23982279 taactttatatcattatatttcaattttttaatattaaaaaagtg-tggtcccgcttaaaagtgagggtcttaagtaagaccccgggtcttataagacc 23982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 5535882 - 5535959
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaa 84  Q
    ||||||| |||| ||| |||| ||||||| |||||||||||||||  | || ||||||| | ||| ||||||||||||    
T  5535882 taactttatatcattatatttcaattttttaatattaaaagagtgcgggtctcgcttaaaagtgggggtcttaagtaa 5535959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31226566 - 31226631
Alignment:
Q  15 tatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaa 80  Q
    |||| ||| |||| ||||||| |||||||||||||||  | |||||||||| | ||||||||||||    
T  31226566 tatcattatatttcaattttttaatattaaaagagtgcgggtcccgcttaaaagtggaggtcttaa 31226631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 4797436 - 4797472
Alignment:
Q  121 acaatggagatacctaatagatatcgggtcttaaatg 157  Q
    ||||| || ||||||||||||||||||||||||||||    
T  4797436 acaatagaaatacctaatagatatcgggtcttaaatg 4797472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 9133736 - 9133680
Alignment:
Q  125 tggagatacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatg 181  Q
    ||||| |||||||||| || |||||||||||| ||||||||| || || ||||||||    
T  9133736 tggaggtacctaataggtaccgggtcttaaatagttaagaccctcccaatagagatg 9133680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 28567842 - 28567762
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||| ||||||| |||||||||| || |  | |||||||||||||||  |||||||||| ||||    
T  28567842 taactttatatcattatatttcaattttttaatattaaaatagagtgggtcccgcttaagattgagggtcttaagtgagac 28567762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 35539597 - 35539439
Alignment:
Q  8 aactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggagg-tcttaagtaagac-tcgggtcttatgagacct 105  Q
    |||||| |||| ||| |||| || |||| |||||||||| ||||  | |||| ||||| ||||| || ||||||||||||| ||||||||||| |||||     
T  35539597 aactttatatcattatatttcaactttttaatattaaaaaagtgcgggtcccacttaaaattggggggtcttaagtaagacatcgggtcttataagaccc 35539498  T
Q  106 tnnnnnnnnntatctacaatggagatacctaatagatatcgggtcttaaatggttaaga 164  Q
    |         | |||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  35539497 tgaaaaagattctctacattggaggtacctaatagataccgggtcttaaatggttaaga 35539439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 55272843 - 55272743
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaag-actcgggtcttatgagacct 105  Q
    ||||||| |||| ||| |||| ||||||| ||||||||||| |||   || |||||||| | ||||||||||||||| | ||||||||||||| ||||||    
T  55272843 taactttatatcattatatttcaattttttaatattaaaagtgtgcgaattccgcttaaaaatggaggtcttaagtaggaactcgggtcttataagacct 55272744  T
Q  106 t 106  Q
    |    
T  55272743 t 55272743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 46006166 - 46006246
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||||||||||| |||||||||||||||  | || ||||||| | |||  ||||||||||||||    
T  46006166 taactttatatcattatattttaattttttaatattaaaagagtgcaggtcacgcttaaaagtgggcgtcttaagtaagac 46006246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 26085102 - 26085023
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaaga 86  Q
    ||||||| || | ||| |||| ||||||| |||||||||| | ||  |||||| ||||||||||||| ||||||||||||    
T  26085102 taactttataccattatatttcaattttttaatattaaaaaaatgtggatcccacttaagattggagatcttaagtaaga 26085023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 36902412 - 36902494
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactc 89  Q
    ||||||| |||| ||| |||||||||||| ||||||||||  ||   |||| | ||||| ||| |||||||||||||||||||    
T  36902412 taactttatatcattatattttaattttttaatattaaaacggtttggatctcacttaaaatttgaggtcttaagtaagactc 36902494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 7885866 - 7885822
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagacc 166  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||    
T  7885866 caatggaggtacctattaggtatcgggtcttaaatggtgaagacc 7885822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 23156329 - 23156411
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagactc 89  Q
    ||||||| ||||  ||||||||||||||| |||||||||||||||  | |||||| ||| ||||| ||||||| |||||||||    
T  23156329 taactttatatcactacattttaattttttaatattaaaagagtgcaggtcccgcataaaattgggggtcttaggtaagactc 23156411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 23802224 - 23802301
Alignment:
Q  9 actttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||| |||| |||||||| ||||||| |||||| ||||||||   |||| |||||||||| |||||||||||||||||    
T  23802224 actttatatcattacatttcaattttttaatattgaaagagtgtgaatcctgcttaagatt-gaggtcttaagtaagac 23802301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 43302207 - 43302289
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagatt--ggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||| ||||||| |||||||||||||||  |||||||||||| | |  || |||||||||||||||    
T  43302207 taactttatatcattatatttcaattttttaatattaaaagagtgtggatcccgcttaaaagtaggggggtcttaagtaagac 43302289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 36482095 - 36482175
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||  ||| |||| ||||||| |||||||||||||||    |||||||||| | ||| |||||||||||||||    
T  36482095 taactttatataattatatttcaattttttaatattaaaagagtgcgattcccgcttaaaagtgggggtcttaagtaagac 36482175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 46748116 - 46748196
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| |||||| | |||| || |||||||||||||||  | |||||||||| | ||| |||||||| ||||||    
T  46748116 taactttatatcattacatatcaattatttaatattaaaagagtgtgggtcccgcttaaaagtgggggtcttaactaagac 46748196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 40287079 - 40287172
Alignment:
Q  12 ttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagact-cgggtcttatgagacc 104  Q
    ||||||| |||||||||||||||| ||||||||||  |||  | ||||||||||  |||  |||||||||||||||| |||||||||| |||||    
T  40287079 ttttatcattacattttaattttttaatattaaaaaggtgtgggtcccgcttaaagttgtgggtcttaagtaagactccgggtcttataagacc 40287172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 36298010 - 36297941
Alignment:
Q  15 tatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaa 84  Q
    |||| |||||||| ||||||| |||||||||| ||||| | || ||||||| | ||||||||||||||||    
T  36298010 tatcattacatttcaattttttaatattaaaatagtgagggtctcgcttaaaagtggaggtcttaagtaa 36297941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 27544394 - 27544327
Alignment:
Q  20 ttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    |||||||| || |||| |||||||||||||||  | |||| ||||||||||| |||||||| ||||||    
T  27544394 ttacatttcaactttttaatattaaaagagtgtgggtcccacttaagattgggggtcttaaataagac 27544327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 11120587 - 11120508
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaa-gagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| |||| ||| |||||||||||| |||||||||| |||||  |||||||||||| | || ||||||||||||||||    
T  11120587 taactttatatcattatattttaattttt-aatattaaaaagagtgcggatcccgcttaaaagtg-aggtcttaagtaagac 11120508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 13984073 - 13983993
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| ||||  ||||||| ||||||| ||||||||||| ||| ||   ||||||||  ||||||||||||| ||||||    
T  13984073 taactttatatcactacatttcaattttttaatattaaaagcgtgttgtctccgcttaaagttggaggtcttaaataagac 13983993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 27544282 - 27544230
Alignment:
Q  131 tacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatgat 183  Q
    |||||||||||||||||||||||||||  | ||||| || |||| ||||||||    
T  27544282 tacctaatagatatcgggtcttaaatgtcttagaccatcccattggagatgat 27544230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 7269859 - 7269902
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagac 165  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  7269859 caatgaagatacctaatagatatcggatcttaaatggttaagac 7269902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 21941136 - 21941195
Alignment:
Q  122 caatggagatacctaatagatatcgggtcttaaatggttaagaccgtctcattagagatg 181  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||||| || |||| ||||||    
T  21941136 caatggaggtacctaataaatatcaggtcttaaatgtttaagaccctcccattggagatg 21941195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 31103619 - 31103654
Alignment:
Q  131 tacctaatagatatcgggtcttaaatggttaagacc 166  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31103619 tacctaatagataacgggtcttaaatggttaagacc 31103654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 7694026 - 7694092
Alignment:
Q  21 tacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| ||||||| |||||||||| ||||  | |||| |||||||||| ||||||||||| ||||    
T  7694026 tacatttcaattttttaatattaaaaaagtgtaggtccctcttaagattgaaggtcttaagtgagac 7694092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 32658514 - 32658593
Alignment:
Q  7 taactttttatctttacattttaatttttcaatattaaaagagtgatgatcccgcttaagattggaggtcttaagtaagac 87  Q
    ||||||| ||||  || |||||||||||| |||||||||||||||  | |||||||||| | |||| |||| |||||||||    
T  32658514 taactttatatcagtatattttaattttttaatattaaaagagtgtgggtcccgcttaaaagtgga-gtctgaagtaagac 32658593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 33494941 - 33494986
Alignment:
Q  121 acaatggagatacctaatagatatcgggtcttaaatggttaagacc 166  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||    
T  33494941 acaatgggggtacctaataggtatcgggtcttaaatggttaagacc 33494986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University