View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7882_high_2 (Length: 666)

Name: NF7882_high_2
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7882_high_2
NF7882_high_2
[»] chr3 (8 HSPs)
chr3 (15-649)||(54454269-54454903)
chr3 (494-649)||(27991114-27991269)
chr3 (17-100)||(27990636-27990719)
chr3 (503-555)||(51898101-51898153)
chr3 (514-581)||(27306103-27306170)
chr3 (480-555)||(39348627-39348702)
chr3 (504-555)||(8614566-8614617)
chr3 (504-555)||(42723511-42723562)
[»] chr2 (7 HSPs)
chr2 (339-622)||(32463515-32463804)
chr2 (376-601)||(15343547-15343773)
chr2 (16-249)||(32463193-32463426)
chr2 (16-101)||(32208671-32208756)
chr2 (510-560)||(12752547-12752597)
chr2 (504-555)||(34319587-34319638)
chr2 (85-210)||(28527488-28527613)
[»] chr1 (5 HSPs)
chr1 (48-561)||(14912025-14912538)
chr1 (480-555)||(32297439-32297514)
chr1 (504-555)||(10886299-10886350)
chr1 (504-555)||(42094357-42094408)
chr1 (504-555)||(35066220-35066271)
[»] chr4 (5 HSPs)
chr4 (512-649)||(33318853-33318990)
chr4 (469-641)||(42458550-42458724)
chr4 (30-101)||(42458112-42458183)
chr4 (504-555)||(30844362-30844413)
chr4 (514-555)||(3426726-3426767)
[»] chr6 (2 HSPs)
chr6 (468-613)||(30145407-30145554)
chr6 (504-555)||(3142685-3142736)
[»] chr5 (5 HSPs)
chr5 (442-623)||(43452542-43452725)
chr5 (505-555)||(20820693-20820743)
chr5 (505-555)||(20827793-20827843)
chr5 (514-555)||(6659310-6659351)
chr5 (520-610)||(17221209-17221299)
[»] scaffold0009 (2 HSPs)
scaffold0009 (494-649)||(99232-99392)
scaffold0009 (16-73)||(99483-99540)
[»] chr7 (8 HSPs)
chr7 (463-610)||(28244960-28245109)
chr7 (504-555)||(20218756-20218807)
chr7 (504-555)||(30712304-30712355)
chr7 (504-555)||(46271187-46271238)
chr7 (504-555)||(47248285-47248336)
chr7 (504-553)||(14965188-14965237)
chr7 (504-553)||(15394660-15394709)
chr7 (519-555)||(31187680-31187716)
[»] chr8 (5 HSPs)
chr8 (450-623)||(8269643-8269819)
chr8 (481-561)||(14089821-14089901)
chr8 (504-555)||(36832439-36832490)
chr8 (504-555)||(42278311-42278362)
chr8 (514-555)||(5343894-5343935)
[»] scaffold1494 (1 HSPs)
scaffold1494 (504-555)||(607-658)
[»] scaffold0658 (1 HSPs)
scaffold0658 (510-549)||(918-957)


Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 15 - 649
Target Start/End: Original strand, 54454269 - 54454903
Alignment:
Q  15 atgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctgaatagcaggttgc 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54454269 atgaacatcctggtttggaagaatcttgcacggatgagagatgagataaaaccatctgaagtagccattgtccgcctccacaccctgaatagcaggttgc 54454368  T
Q  115 cccaactgctgaggggtcagctaatgatcaacatggctcacgtagcggtagctgatctgacttaaggtgatatgaacatttgcactgtcatttgaagatc 214  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54454369 cccaactgctgaggggtcagctaatgatcaacatggctcatgtagtggtagctgatctgacttaaggtgatatgaacatttgcactgtcatttgaagatc 54454468  T
Q  215 tggggatggtctgtatgtacttaaactagcgaagctcccactccggcaaatatcttaccttgcagatatcttatctcaaccatcctttagtaaaggctga 314  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54454469 tgaggatgatctgtatgtacttaaactagcgaagctcccactccggcaaatatcttaccttgcagatatcttatctcaaccatcctttagtaaaggctga 54454568  T
Q  315 cagactcgaacatacatagatcacggtggtcagcatatgaggtcatgaatacaccacccagatccaactgatccagatggtctatgtactcgtatggtgc 414  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54454569 cagactcgaacagacatagatcacggtggtcagcatatgaggtcatgaatacaccacccagatccaactgatccagatggtctatgtactcgtatggtgc 54454668  T
Q  415 atacatacccctgagcggtataaacatcatggtgtgtggatgctgacgatcctgatatccaccccacatccttgattcacatacccctaaagtgttgata 514  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54454669 aaacatacccctgagcggtataaacatcatggtgtgtggatgctgacgatcctgatatccaccccgcatccttgattcacatacccctaaagtgttgata 54454768  T
Q  515 cacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatactaatttatttatacatgcaacag 614  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54454769 cacccaagcctgcaacaaagacaaccacatgtaaatatacataaaatcaatacatacagatgaataatcagacatactaatttatttatacatgcaacag 54454868  T
Q  615 agacaagtaacctgacatatgcttggtattgtaat 649  Q
    |||||||||||||  ||||||||||||||||||||    
T  54454869 agacaagtaaccttgcatatgcttggtattgtaat 54454903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 494 - 649
Target Start/End: Original strand, 27991114 - 27991269
Alignment:
Q  494 catacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatacta 593  Q
    ||||||||| ||||| |||||||| |||||||||| |||||| |||||||| |||||||||  |||||||| |  |||||||||| || ||  |||| |     
T  27991114 catacccctgaagtgctgatacactcaagcctgcaccaaagaaaaccacatataaatatacgaacaatcaacatttacagatgaaaaaacaaacataatt 27991213  T
Q  594 atttatttatacatgcaacagagacaagtaacctgacatatgcttggtattgtaat 649  Q
    ||||||||||||  ||| || || |||||| ||||||||||||||||  |||||||    
T  27991214 atttatttataccggcagcaaagtcaagtatcctgacatatgcttggcgttgtaat 27991269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 27990636 - 27990719
Alignment:
Q  17 gaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccct 100  Q
    |||| |||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||| ||||  ||| ||||||||||||    
T  27990636 gaacctcctggtttggaagaatcatgcgtggatgagagacgagataaaaccatctgatgtatccctcttccacctccacaccct 27990719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 51898153 - 51898101
Alignment:
Q  503 aaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  51898153 aaagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 51898101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 514 - 581
Target Start/End: Original strand, 27306103 - 27306170
Alignment:
Q  514 acacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacagatgaataa 581  Q
    ||||||||||||||| ||||  |||| |||| |||||||||| ||||| || ||||||||||||||||    
T  27306103 acacccaagcctgcagcaaaatcaacaacatataaatatacaaacaattaagacatacagatgaataa 27306170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 555
Target Start/End: Complemental strand, 39348702 - 39348627
Alignment:
Q  480 acatccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||||||| ||||||||||    ||||| ||| |||||||||| |||| ||||||||||||||| ||||||||||    
T  39348702 acatccttgcttcacatacctgggaagtgatgaaacacccaagcttgcaccaaagacaaccacatataaatataca 39348627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 8614566 - 8614617
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| || |||||||||||| ||||||||||||||| ||||||||||    
T  8614566 aagtgatgaaacgcccaagcctgcaccaaagacaaccacatataaatataca 8614617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 42723562 - 42723511
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||| ||||| ||||||||||||||| ||||||||||    
T  42723562 aagtgatgaaacacccaagtctgcaccaaagacaaccacatataaatataca 42723511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 622
Target Start/End: Original strand, 32463515 - 32463804
Alignment:
Q  339 ggtggtcagcatatgaggtcatgaatacaccacccagatccaactgatccagatggtctatgtactcgtatggtgcatacatacccctgagcggtataaa 438  Q
    |||| |||||||||| || |||||| | ||   ||| ||||| |||||||||||||||| | ||||||| ||||||| |||||||  ||||||||| |||    
T  32463515 ggtgctcagcatatggggccatgaaaatactcgccatatccagctgatccagatggtctctatactcgtctggtgcaaacatacctttgagcggtacaaa 32463614  T
Q  439 catcatggtgtgtggatgctgacgatcctgatatccacccca--catccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagac 536  Q
    |||||||| ||||| ||| ||| | | | |||||||||||||  |||||||||| | ||||| ||| ||||||| ||| ||||||| |||||||||||||    
T  32463615 catcatggcgtgtgaatgttgatgtttccgatatccaccccatacatccttgatacccatactcctgaagtgttaatatacccaagtctgcaacaaagac 32463714  T
Q  537 aaccacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatac----taatttatttatacatgcaacagagacaagt 622  Q
    ||||||||||||||||||| ||||| || ||||||| ||| |||| ||| |||||    | |||||||||||| ||||||||||||||||    
T  32463715 aaccacatgtaaatatacaaacaataaagacatacaaatgcataaacagacatacttatttatttatttatacctgcaacagagacaagt 32463804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 601
Target Start/End: Complemental strand, 15343773 - 15343547
Alignment:
Q  376 atccaactgatccagatggtctatgtactcgtatggtgcatacatacccctgagcggtataaacatcatggtgtgtggatgctgacgatcctgatatcca 475  Q
    |||||||||||| ||||| |||||||| |||| ||||| | || ||||||||| || |||| |||||||||    |||||||||| | |||||||||| |    
T  15343773 atccaactgatctagatgctctatgta-tcgtctggtgtagacgtacccctgaacgatatatacatcatggcacatggatgctgaagttcctgatatcta 15343675  T
Q  476 ccccaca--tccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacag 573  Q
    ||||| |  |||||| | |  || ||| | || || | | ||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  15343674 ccccatagatccttgttaccaattcccttgaaatgcttaaacacccaagactgcaacaaagacaaccacatataaatatacaaacaatcaaaacatacag 15343575  T
Q  574 atgaataatcaggcatactaatttattt 601  Q
    |||||||| ||  |||||| ||||||||    
T  15343574 atgaataaacatacatacttatttattt 15343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 32463193 - 32463426
Alignment:
Q  16 tgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctgaatagcaggttgcc 115  Q
    |||||||||||||||||||||||| || | |||||||||| |||||||| |||||| | |||  |    |||||||||||||||| | |||||||||| |    
T  32463193 tgaacatcctggtttggaagaatcatgtgtggatgagagacgagataaagccatctaatgtattctgcctccgcctccacaccctaagtagcaggttgac 32463292  T
Q  116 ccaactgctgaggggtcagctaatgatcaacatggctcacgtagcggtagctgatctgacttaaggtgatatgaacatttgcactgtcatttgaagatct 215  Q
    |||||| | |||   ||| |  |||||| | ||||  | | |||||||||||||||| |  |||||| || ||||||  | ||||| ||| || ||||||    
T  32463293 ccaactccggagctctcatcgcatgatctagatggtgcgcatagcggtagctgatcttagctaaggtcatttgaacagatacactgccatgtggagatct 32463392  T
Q  216 ggggatggtctgtatgtacttaaactagcgaagc 249  Q
    ||||| ||||||  |||||  ||||| |||||||    
T  32463393 ggggacggtctgcttgtacccaaactggcgaagc 32463426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 32208756 - 32208671
Alignment:
Q  16 tgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctg 101  Q
    ||||| |||||||||||||||||| |||| ||| |||||| ||||||||||||||||| ||| ||||  ||| ||||||| |||||    
T  32208756 tgaacctcctggtttggaagaatcatgcgtggaagagagacgagataaaaccatctgatgtatccctcttccacctccactccctg 32208671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 560
Target Start/End: Complemental strand, 12752597 - 12752547
Alignment:
Q  510 tgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaa 560  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||| ||||    
T  12752597 tgatacactcaagcctgcaacaaagaccaccacatataaatatacaaacaa 12752547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 34319587 - 34319638
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| |||||||||||||||  |||||| ||||||||||| ||||||||||    
T  34319587 aagtgctgatacacccaagccatcaacaatgacaaccacatataaatataca 34319638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 28527488 - 28527613
Alignment:
Q  85 tccgcctccacaccctgaatagcaggttgccccaactgctgaggggtcagctaatgatcaacatggctcacgtagcggtagctgatctgacttaaggtga 184  Q
    |||||| ||||||||||||||| |||||||||||||| | ||     ||||  |||||||| ||||  | | ||| |||||||||| |||  |||||| |    
T  28527488 tccgccaccacaccctgaatagtaggttgccccaactccggaactcccagcacatgatcaagatggtgcgcatagaggtagctgatttgatctaaggtta 28527587  T
Q  185 tatgaacatttgcactgtcatttgaa 210  Q
    | ||||||  ||||||||||||||||    
T  28527588 tttgaacaggtgcactgtcatttgaa 28527613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 48 - 561
Target Start/End: Complemental strand, 14912538 - 14912025
Alignment:
Q  48 atgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctgaatagcaggttgccccaactgctgaggggtcagctaatgatcaaca 147  Q
    |||||||||||||||||||||||| | ||||||    | ||||||||||||||||||||||  || ||||||||||||||  ||||||  ||||||| ||    
T  14912538 atgagagatgagataaaaccatctaatgtagcctgccttcgcctccacaccctgaatagcaaattcccccaactgctgagctgtcagcacatgatcacca 14912439  T
Q  148 tggctcacgtagcggtagctgatctgacttaaggtgatatgaacatttgcactgtcatttgaagatctggggatggtctgtatgtacttaaactagcgaa 247  Q
    ||| || |  | ||||||||||||| ||||||||| || ||||||  |||||| ||||||| |||||| |||| || ||| ||||||  ||||| |||||    
T  14912438 tggttcgcacaacggtagctgatctaacttaaggtcatctgaacaggtgcactatcatttggagatcttgggacggactgcatgtacccaaactggcgaa 14912339  T
Q  248 gctcccactccggcaaatatcttaccttgcagatatcttatctcaaccatcctttagtaaaggctgacagactcgaacatacatagatcacggtggtcag 347  Q
       | |  |||| || |||||| ||||||| | || | ||| | ||||||||  |||||||| |||||   ||| |||  ||||| | |||  || ||||    
T  14912338 ttgctcgatccgacagatatctcaccttgcgggtaccgtatttgaaccatcc-atagtaaagactgacttgctcaaacgaacatacaacacaatgttcag 14912240  T
Q  348 cat-atgaggtcatgaatacaccacccagatccaactgatccagatggtctatgtactcgtatggtgcatacatacccctgagcggtataaacatcatgg 446  Q
    ||| ||| || |||||| |||        || || |||||||||||||| | ||||||||| ||||| | |||||| ||||||||||| |||||||||||    
T  14912239 cataatggggccatgaaaaca--------at-cacctgatccagatggtttttgtactcgtctggtggagacatactcctgagcggtacaaacatcatgg 14912149  T
Q  447 tgtgtggatgctgacgatcctgatatc--caccccacatccttgattcacataccccta-------aagtgttgatacacccaagcctgcaacaaagaca 537  Q
     ||||||||| | ||  ||| ||||||  | ||  ||||||||||| | ||||||| ||       || || ||||||||||||| ||||||||||||||    
T  14912148 cgtgtggatggtaacattcccgatatcatctccatacatccttgatacccatacccataccccttgaaatgatgatacacccaagtctgcaacaaagaca 14912049  T
Q  538 accacatgtaaatatacatacaat 561  Q
    |||||||||||||||||| |||||    
T  14912048 accacatgtaaatatacaaacaat 14912025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 555
Target Start/End: Original strand, 32297439 - 32297514
Alignment:
Q  480 acatccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||||||| ||| ||||||   |||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  32297439 acatccttgcttcccatacctggaaagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 32297514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 10886350 - 10886299
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  10886350 aagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 10886299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 42094357 - 42094408
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  42094357 aagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 42094408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 35066271 - 35066220
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| |||||||||| |||| ||||||||||||||| ||||||||||    
T  35066271 aagtgatgaaacacccaagcatgcaccaaagacaaccacatataaatataca 35066220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 512 - 649
Target Start/End: Original strand, 33318853 - 33318990
Alignment:
Q  512 atacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatactaatttatttatacatgcaa 611  Q
    |||||||||||||||||||||||||||| |||  |||||||||| |||||||| ||||||| |||||||| ||  |||||| ||||||| |||  |||||    
T  33318853 atacacccaagcctgcaacaaagacaacaacaaataaatatacaaacaatcaagacatacaaatgaataaacatacatacttatttattcatatctgcaa 33318952  T
Q  612 cagagacaagtaacctgacatatgcttggtattgtaat 649  Q
    || ||| ||||||||||||| ||||||||| |||||||    
T  33318953 caaagataagtaacctgacagatgcttggtcttgtaat 33318990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 469 - 641
Target Start/End: Original strand, 42458550 - 42458724
Alignment:
Q  469 atatccaccccac--atccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaata 566  Q
    |||||||||||||  ||||||| | |  |||||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||| |    
T  42458550 atatccaccccacgcatccttgttgcctatacccctgaaatgttgatacactcaagcatgcaacaaagacaaccacatataaatatacaaacaatcaaca 42458649  T
Q  567 catacagatgaataatcaggcatactaatttatttatacatgcaacagagacaagtaacctgacatatgcttggt 641  Q
    | |||||||||| || ||  |||| | |||| ||||||| ||||||| || |||||| ||||||| |||||||||    
T  42458650 cttacagatgaaaaaacaaacataattatttctttatacctgcaacaaagtcaagtatcctgacagatgcttggt 42458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 42458112 - 42458183
Alignment:
Q  30 tggaagaatcttgcgcggatgagagatgagataaaaccatctgaagtagcccttgtccgcctccacaccctg 101  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||  ||||  |||||||||||||||||    
T  42458112 tggaagaatcatgcgcggatgagagacgcgataaaaccatctgatgtgtccctcttccgcctccacaccctg 42458183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 30844362 - 30844413
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  30844362 aagtgatgaaacacccaagcctgcaccaaagacaaccacgtataaatataca 30844413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Original strand, 3426726 - 3426767
Alignment:
Q  514 acacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||||||||||| || |||| |||||||||||||||||||||    
T  3426726 acacccaagcctacaccaaacacaaccacatgtaaatataca 3426767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 468 - 613
Target Start/End: Complemental strand, 30145554 - 30145407
Alignment:
Q  468 gatatccaccccaca--tccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaatcaat 565  Q
    |||||||||||||||  |||||| | | ||||| | | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||     
T  30145554 gatatccaccccacacatccttgttgcccatacgcttgaagtgatgatacacccaagcctgcaacaaagacaaccacatataaatatacaaacaatcaac 30145455  T
Q  566 acatacagatgaataatcaggcatactaatttatttatacatgcaaca 613  Q
    || |||||||||| || ||| |||| | |||||||||||| |||||||    
T  30145454 acttacagatgaaaaagcagacataattatttatttatacctgcaaca 30145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 3142685 - 3142736
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  3142685 aagtgatgaaacacccaagcctgcaccaaatacaaccacatataaatataca 3142736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 442 - 623
Target Start/End: Original strand, 43452542 - 43452725
Alignment:
Q  442 catggtgtgtggatgctgacgatcctgatatccaccccac--atccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaac 539  Q
    ||||| |||||||||||||  |||| ||||||||||||||  ||||||| | |  |||||||| |||||||||||||||||| |||| ||||||||||||    
T  43452542 catggcgtgtggatgctgatcatcccgatatccaccccacgcatccttgctgcttatacccctgaagtgttgatacacccaatcctgtaacaaagacaac 43452641  T
Q  540 cacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatactaatttatttatacatgcaacagagacaagta 623  Q
    ||||| |||||||| | ||||| || || ||||| |||| || ||  |||| | |||||||||||| ||||||| || ||||||    
T  43452642 cacatataaatatataaacaataaacacttacagctgaaaaaacaaacataattatttatttatacgtgcaacaaagtcaagta 43452725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 20820693 - 20820743
Alignment:
Q  505 agtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  20820693 agtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 20820743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 20827793 - 20827843
Alignment:
Q  505 agtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  20827793 agtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 20827843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 6659351 - 6659310
Alignment:
Q  514 acacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  6659351 acacccaagcctgcaccaaagacaaccacatataaatataca 6659310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 610
Target Start/End: Original strand, 17221209 - 17221299
Alignment:
Q  520 aagcctgcaacaaagacaaccacatgtaaatatacatacaatcaatacatacagatgaataatcaggcatactaatttatttatacatgca 610  Q
    ||||||||||||||||||||| ||| |||||||||| ||| |||| |  |||| ||||| || ||  |||| | |||||||||||| ||||    
T  17221209 aagcctgcaacaaagacaaccgcatataaatatacaaacagtcaaaatttacaaatgaaaaaacaaacataattatttatttatacctgca 17221299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 494 - 649
Target Start/End: Complemental strand, 99392 - 99232
Alignment:
Q  494 catacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca-tacaatcaatacatacagatgaataatcaggcatac- 591  Q
    |||||||||||| |||||| | ||| ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||  | | ||| ||  |||||     
T  99392 catacccctaaaatgttgaaataccaaagtctgcaacaaagacaaccacatgtaaatatacattacaatcaagacatacatgttactaaacaaacatact 99293  T
Q  592 ---taatttatttatacatgcaacagagacaagtaacctgacatatgcttggtattgtaat 649  Q
       | |||||||||||| ||||||| ||| ||||| ||||||| |||||||||||||||||    
T  99292 tatttatttatttatacctgcaacaaagataagtatcctgacagatgcttggtattgtaat 99232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 99540 - 99483
Alignment:
Q  16 tgaacatcctggtttggaagaatcttgcgcggatgagagatgagataaaaccatctga 73  Q
    |||||||||| || |||||||||| |||| ||||| ||||||| ||||||||||||||    
T  99540 tgaacatcctcgtctggaagaatcatgcgtggatgtgagatgatataaaaccatctga 99483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 610
Target Start/End: Complemental strand, 28245109 - 28244960
Alignment:
Q  463 atcctgatatccaccccaca--tccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaa 560  Q
    ||||||||||||||||||||  |||||| | |  ||| |||| |||||||||||   ||||||||||||||||||||||||||| |||||||||| ||||    
T  28245109 atcctgatatccaccccacacatccttgctgcctataaccctgaagtgttgataagtccaagcctgcaacaaagacaaccacatataaatatacaaacaa 28245010  T
Q  561 tcaatacatacagatgaataatcaggcatactaatttatttatacatgca 610  Q
    |||| || |||||||||| || ||  |||| | |||||||||||| ||||    
T  28245009 tcaaaacttacagatgaaaaaacaaacataattatttatttatacctgca 28244960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 20218756 - 20218807
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  20218756 aagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 20218807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 30712304 - 30712355
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  30712304 aagtgatgaaacacccaagcctgcaccaaagacaaccacatataaatataca 30712355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 46271187 - 46271238
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||    
T  46271187 aagtggtgaaacacccaagcctgcaccaaagacaatcacatataaatataca 46271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 47248336 - 47248285
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| |||| |||||    
T  47248336 aagtgatgaaacacccaagcctgcaccaaagacaaccacatataaaaataca 47248285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 553
Target Start/End: Complemental strand, 14965237 - 14965188
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatata 553  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| || |||||    
T  14965237 aagtgatgaaacacccaagcctgcaccaaagacaaccacatatagatata 14965188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 553
Target Start/End: Complemental strand, 15394709 - 15394660
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatata 553  Q
    ||||| ||| ||||||||||||||| ||||||||||||||| || |||||    
T  15394709 aagtgatgaaacacccaagcctgcaccaaagacaaccacatatagatata 15394660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 555
Target Start/End: Original strand, 31187680 - 31187716
Alignment:
Q  519 caagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  31187680 caagcctgcaccaaagacaaccacatataaatataca 31187716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 450 - 623
Target Start/End: Complemental strand, 8269819 - 8269643
Alignment:
Q  450 gtggatgctgacgatcctgatatccaccccac--atccttgattcacataccc-ctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgt 546  Q
    |||||||||||  |||| ||||||||||||||  ||||||| | |  |||| | || ||||| | ||| |||||||||| |||||||||||||||||| |    
T  8269819 gtggatgctgattatcccgatatccaccccacgcatccttgctgcttatacacgctgaagtgcttataaacccaagcctacaacaaagacaaccacatat 8269720  T
Q  547 aaatatacatacaatcaatacatacagatgaataatcaggcatactaatttatttatacatgcaacagagacaagta 623  Q
    ||||||||| |||||||| || ||  |||||| |||||  |||| | ||||||||||||  |||||| || ||||||    
T  8269719 aaatatacaaacaatcaacacttattgatgaaaaatcaaacataattatttatttataccagcaacaaagtcaagta 8269643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 14089821 - 14089901
Alignment:
Q  481 catccttgattcacatacccctaaagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatatacatacaat 561  Q
    |||||||| ||| |||||| |  ||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| |||||    
T  14089821 catccttgcttcccatacctcggaagtgctgatatacccaagcctgcaacaatgacaaccacatataaatatacaaacaat 14089901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 36832490 - 36832439
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| |||| |||||||||| ||||||||||||||| ||||||||||    
T  36832490 aagtgatgaaacacacaagcctgcaccaaagacaaccacatataaatataca 36832439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 42278362 - 42278311
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| |||| |||||||||| ||||||||||||||| ||||||||||    
T  42278362 aagtgatgaaacactcaagcctgcaccaaagacaaccacatataaatataca 42278311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 555
Target Start/End: Complemental strand, 5343935 - 5343894
Alignment:
Q  514 acacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    |||| |||||||||| ||||||||||||||| ||||||||||    
T  5343935 acactcaagcctgcaccaaagacaaccacatataaatataca 5343894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 607 - 658
Alignment:
Q  504 aagtgttgatacacccaagcctgcaacaaagacaaccacatgtaaatataca 555  Q
    ||||| ||| || |||||||||||| ||||||||||||||| ||||||||||    
T  607 aagtgatgaaacgcccaagcctgcaccaaagacaaccacatataaatataca 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 549
Target Start/End: Complemental strand, 957 - 918
Alignment:
Q  510 tgatacacccaagcctgcaacaaagacaaccacatgtaaa 549  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  957 tgatacacccaagcctgcaacaatgacaaccacatataaa 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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