View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7882_high_3 (Length: 435)
Name: NF7882_high_3
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 14213718 - 14213315
Alignment:
| Q |
9 |
taatacttaaatgatcgattttgtgtttagtactatgttcttggactaaatattttgtgataaataagatattgatatggtcgatattaattaatcattt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213718 |
taatacttaaatgatcgattttgtgtttagtactatgttcttggactaaatattttgtgataaataagatattgatatggtcgatattaattaatcattt |
14213619 |
T |
|
| Q |
109 |
agctacaatattttcaatagaaggtatcaataaaacaagacgttctttttgatatgcttgtagtaaggtataattaataatactagggatatgctggtgc |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14213618 |
agctacaatattttcaatagaagttatcaataaaacaagactttctttttgatatgcttgtagtaaggtataattaataacactagggatatgctgg--- |
14213522 |
T |
|
| Q |
209 |
tctaaggtgtcactattaatattatgttacaatatcattgctactgctcctggactgatgtaaaacaagtcttcagtatctgagaaatcttgttccccct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213521 |
-ctaaggtgtcactattaatattatgttacaatttcactgctactgctcctggactgatgtaaaacaagtcttcagtatctgagaaatcttgttccccct |
14213423 |
T |
|
| Q |
309 |
aaggccttagtatatagagagatcactgatctcaaaattattcatagtaggattggtggtattgttagtgacattcttcatctttttgattttcttgagc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213422 |
aaggccttagtatatagagagatcactgatctcaaaattattcatagtaggattggtggtattgttagtgacattcttcatctttttgattttcttgagt |
14213323 |
T |
|
| Q |
409 |
gtccttca |
416 |
Q |
| |
|
|||||||| |
|
|
| T |
14213322 |
gtccttca |
14213315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University