View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7882_high_4 (Length: 418)
Name: NF7882_high_4
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 2386773 - 2387182
Alignment:
| Q |
1 |
tctgtgtcgtgtatgatgtccatgtcagtatccgtgcttcatagacaatatgtatagaaagatatcggcaactcaaaattctctttaatatggttttacc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2386773 |
tctgtgtcgtgtctgatgtccatgtcagtatccgtgcttcatagacaatatgtatagaaagatatcggcaactcaaaattctctttaatatggttttacc |
2386872 |
T |
|
| Q |
101 |
tatttgttttggtgaataaattaccttatagacctgaatatatcagatcatgacatcataatcatggtttcatgtctatataattggttggtaacttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2386873 |
tatttgttttggtgaataaattaccttatagacctgaatatatcagatcatgacatcataatcatggtttcatgtctatataattggttggtaacttcag |
2386972 |
T |
|
| Q |
201 |
ttcattctactgagggatttttgcaattattatatacttttaggatatggtgcttaattg--------aaaaaataagaagtgctttactttttctctaa |
292 |
Q |
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| T |
2386973 |
ttcattctactgagggatttttgcaattattatatacttttagcatatggtgcttaattgaatagcataaaaaataagaagtgctttactttttctctaa |
2387072 |
T |
|
| Q |
293 |
gtaaagtaagatatgaattttttataatcatagaggcattattgccttatctattaactatactgttacagatatagtgacaacttttatgtgtatgtgt |
392 |
Q |
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| T |
2387073 |
gtaaagtaagatatgaaatttttataatcatagaggcattattgccttatctattaactatactgttatagatatagtgacaacttttatgtgtatgtgt |
2387172 |
T |
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| Q |
393 |
ttactgatgt |
402 |
Q |
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||||| |||| |
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| T |
2387173 |
ttacttatgt |
2387182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35519872 - 35519914
Alignment:
| Q |
1 |
tctgtgtcgtgtatgatgtccatgtcagtatccgtgcttcatag |
44 |
Q |
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| T |
35519872 |
tctgtgtcgtgt-tgatgtccatgtccgtatccgtgcttcatag |
35519914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 29510379 - 29510419
Alignment:
| Q |
4 |
gtgtcgtgtatgatgtccatgtcagtatccgtgcttcatag |
44 |
Q |
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||||||||| | |||||||||||||||||||||||||||| |
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| T |
29510379 |
gtgtcgtgtccggtgtccatgtcagtatccgtgcttcatag |
29510419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 9709804 - 9709767
Alignment:
| Q |
4 |
gtgtcgtgtatgatgtccatgtcagtatccgtgcttca |
41 |
Q |
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| T |
9709804 |
gtgtcgtgtctgatgtccatgtctgtatccgtgcttca |
9709767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4157145 - 4157101
Alignment:
| Q |
1 |
tctgtgtcgtgtatgatgtccatgtcagtatccgtgcttcataga |
45 |
Q |
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|||||||||||| || ||||| |||| |||||||||||||||||| |
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| T |
4157145 |
tctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga |
4157101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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