View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7882_high_6 (Length: 362)
Name: NF7882_high_6
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 45232949 - 45233297
Alignment:
| Q |
1 |
tgattgaattcttataaaccctgcaaccaattccaaaggtgaaaaaccactagtccaaaagttatttccattttaaaataaattgtgaagcacatgatta |
100 |
Q |
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| T |
45232949 |
tgattaaattcttataaaccctgcaaccaattccaaaggtgaaaaaccactagtccaaaagttatttccattttaaaataaattgtgaagcacatgatta |
45233048 |
T |
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| Q |
101 |
ttatttttatctcttaaaacccaacaaccaaaacacaaaatgtacaaatgcagcatcctcctatgatgaaaaagactcaccagaggttttatttcaaacg |
200 |
Q |
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| T |
45233049 |
ttatttttatctcttaaaacccaacaaccaaaacacaaaatgtacaaatgcagcatcctcctatgatgaaaaagactcaccagaggttttatttcaaacg |
45233148 |
T |
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| Q |
201 |
ccaatccatatgaatgcttaaaattcaatcttgcttctacaattcaccaataaaaagaacaaattttgtattgtatcagctaggaatttttatgttttgt |
300 |
Q |
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| T |
45233149 |
ccagtccatatgaatgcttaaaattcaatcttgcttatacaattcaccgataaaaagaacaaactttgtattgtatcagctaggaatttttatgttttgt |
45233248 |
T |
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| Q |
301 |
gttatctatggaaagtgttaccatatcttggtttcgtagggtgttggat |
349 |
Q |
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| T |
45233249 |
gttatctatggaaagtgttaccatatcttggtttcgtagggtgttggat |
45233297 |
T |
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