View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7882_low_11 (Length: 280)
Name: NF7882_low_11
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_low_11 |
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| [»] scaffold0294 (2 HSPs) |
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Alignment Details
Target: scaffold0294 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 16610 - 16401
Alignment:
| Q |
1 |
gcaatgaatgcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
100 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||| |
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| T |
16610 |
gcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgtta |
16511 |
T |
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| Q |
101 |
gatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16510 |
gatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcata |
16411 |
T |
|
| Q |
201 |
atttaaaaag |
210 |
Q |
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|| ||||||| |
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| T |
16410 |
atgtaaaaag |
16401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 16411 - 16379
Alignment:
| Q |
211 |
aatgtaaaaagtaaacatataaattaatccatt |
243 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
16411 |
aatgtaaaaagtaaacatataaattaatccatt |
16379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 11798009 - 11797814
Alignment:
| Q |
1 |
gcaatgaatgcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11798009 |
gcaatgaaagcaccaaagagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
11797910 |
T |
|
| Q |
101 |
gatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcat |
196 |
Q |
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| T |
11797909 |
gatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcat |
11797814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 11696168 - 11695984
Alignment:
| Q |
1 |
gcaatgaatgcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696168 |
gcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
11696069 |
T |
|
| Q |
101 |
gatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatt |
185 |
Q |
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||||||||||||| || || | ||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||| ||| |||| |
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| T |
11696068 |
gatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
11695984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11779147 - 11778983
Alignment:
| Q |
1 |
gcaatgaatgcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgtta |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||||| |
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| T |
11779147 |
gcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgtta |
11779048 |
T |
|
| Q |
101 |
gatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaa |
165 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||| ||||||||||| || |||||||||||| |
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| T |
11779047 |
gatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaa |
11778983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 11701956 - 11701757
Alignment:
| Q |
10 |
gcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgata |
109 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
11701956 |
gcacctaagagaggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgata |
11701857 |
T |
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| Q |
110 |
tcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatcataatttaaaaa |
209 |
Q |
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| T |
11701856 |
tcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatcaccatttaaaaa |
11701757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 11676063 - 11675880
Alignment:
| Q |
10 |
gcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgata |
109 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11676063 |
gcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgata |
11675964 |
T |
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| Q |
110 |
tcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
193 |
Q |
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||||||| || | ||||||| |||||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
11675963 |
tcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11675880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 11684342 - 11684159
Alignment:
| Q |
10 |
gcaccaaagagaggaagtagagaagcagttccagcccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgata |
109 |
Q |
| |
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||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11684342 |
gcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgata |
11684243 |
T |
|
| Q |
110 |
tcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct |
193 |
Q |
| |
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||||||| || | ||||||| |||||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
11684242 |
tcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct |
11684159 |
T |
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