View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7882_low_4 (Length: 539)
Name: NF7882_low_4
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 299 - 531
Target Start/End: Complemental strand, 4858854 - 4858622
Alignment:
| Q |
299 |
cttcttccacttccacaatcccaagaagatgtaactgaagccctttgatccaatccaagttgttcagaagtcaaagtacaattaaacaaactaccatcat |
398 |
Q |
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| T |
4858854 |
cttcttccacttccacaatcccaagaagatgtaactgaagccctttgatccaatccaagttgttcagaagtcaaagtacaattaaacaaactaccatcat |
4858755 |
T |
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| Q |
399 |
catcacaacaactcgaaacaacttcagattgttcattaccatccttaacaggttgttgaaattgcaatccaggtaatgcccatttcatcaccttattctt |
498 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4858754 |
catcacaacaactcgaaacaacttcagattgttcatcaccatccttaacaggttgttgaaattgcaatccaggtaatgcccatttcatcaccttattctt |
4858655 |
T |
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| Q |
499 |
cttatcattctcttcctcttcctcattcttctc |
531 |
Q |
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| T |
4858654 |
cttatcattctcttcctcttcctcattcttctc |
4858622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 4859131 - 4858993
Alignment:
| Q |
22 |
atcacacgtgtaagtgtcaaataccggacatgacttaatcagaacgtatcaacgctacagaactgaaaatacaataacaataacatatctaaaatcttac |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4859131 |
atcacacgtgtcagtgtcaaataccggacatgacttaatcagaacgtatcaacgctacagaactgaaaatacaataacaataacatttctaaaatcttac |
4859032 |
T |
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| Q |
122 |
atttcttctgcttcttctaccaccagaagaattcctgct |
160 |
Q |
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| T |
4859031 |
atttcttctgcttcttctaccaccagaagaattcctgct |
4858993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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