View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7882_low_7 (Length: 369)
Name: NF7882_low_7
Description: NF7882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7882_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 7005915 - 7006264
Alignment:
| Q |
1 |
caccacaatcacacattcatgtgcacttccaatgaagagataagattatggaggaaaatccacgtggcattaccatagtggtacctaacgataaggctac |
100 |
Q |
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| T |
7005915 |
caccacaatcacacattcatgtgcacttccaatgaagagataagattatggaggaaaatccacgtggcattaccatagtggtacctaacgataaggctac |
7006014 |
T |
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| Q |
101 |
catttcaaaacctaaagctcttttgtggccaatattatgtaatatccataattattcaatccaacggtccataattttcagccaccaatcctttcaattc |
200 |
Q |
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| T |
7006015 |
catttcaaaacctaaagctcttttgtggccaatattatgtaatatccataattattcaatccaacggtccaaaatttacagccaccaatcctttcaattc |
7006114 |
T |
|
| Q |
201 |
cataccattagataagtaacatccaaattttactattatatatagcaagtttgagttgaagcaataagcagtagaagcaaaagttgagtacttggtgaac |
300 |
Q |
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| T |
7006115 |
cataccattagataagtaacatccaaattttactattatatatagcaagtttgagttgaagcaataagcagtagaagcaaaagttgagtacttggtgaac |
7006214 |
T |
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| Q |
301 |
taagaaggagtaggaaaaatggctttgatctcctccgcctctgtcgccac |
350 |
Q |
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| T |
7006215 |
taagaaggagtaggaaaaatggctttgatctcctccgccgctgtcaccac |
7006264 |
T |
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