View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7883_high_11 (Length: 316)
Name: NF7883_high_11
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_high_11 |
 | |
|
| [»] scaffold0767 (1 HSPs) |
| | |
|
| [»] scaffold1817 (1 HSPs) |
| | |
|
| [»] scaffold0671 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0123 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 16023679 - 16023407
Alignment:
| Q |
23 |
catcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggaga |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16023679 |
catcttaaaactttattagtacaattttggtttgagatgttctttcataggtattgtaatttgttaacaatgtgagtgaatctcattttcatggaggaga |
16023580 |
T |
|
| Q |
123 |
tggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16023579 |
tggttttaccatccttcatgtgaaaattggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
16023480 |
T |
|
| Q |
223 |
aggcgtcccacattactttagcggtcttacaatttaaaactgagtgatactcgtttacgatgagtgtggaaat |
295 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16023479 |
aggcttcccacattacattagcggtcttacaatttgaaactgagtgatactcgtttacgatgagtgtggaaat |
16023407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 16049051 - 16048781
Alignment:
| Q |
23 |
catcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggaga |
122 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
16049051 |
catcttaaaactttattagaacaattttggtttgagacggtctttcataggtcttgtaatttgttaacaatgcgagtgaatctcattttcatggagtaga |
16048952 |
T |
|
| Q |
123 |
tggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| |||| | || ||| |||||||||| | || |||||||||||||||||||||| |
|
|
| T |
16048951 |
tggttttaccatccttcatgtg-aaatagcttaaattgttgaatgacggtagtgatgtttgattgcttaacgtgttcagtaccctcatggaaggtttcga |
16048853 |
T |
|
| Q |
223 |
aggcgtcccacattactttagcggtcttacaatttaaaactgagtgatactcgtttacgatgagtgtggaaat |
295 |
Q |
| |
|
| || ||||| ||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
16048852 |
a-gcatcccatattgctttagcggtcttacaatatgaaactcagtgatactcgtttacgaccagtgtggaaat |
16048781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 23479403 - 23479172
Alignment:
| Q |
23 |
catcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggaga |
122 |
Q |
| |
|
||||| |||| ||||||||| ||| ||||||||| || || || | |||| ||| || | ||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
23479403 |
catctcaaaattttattagtgcaatcttggtttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctcatttgcatggaggaga |
23479304 |
T |
|
| Q |
123 |
tggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
222 |
Q |
| |
|
|||||| |||||| | | | ||||| || | | ||||||| | | |||||||||||||||||| |||||||||||||| || || || | |||||| | |
|
|
| T |
23479303 |
tggtttcaccatcttccttacgaaaa-agctcatattgttgcacaagggtattaattttttattgtttaacatcatcggttccttcgtgaagggtttcca |
23479205 |
T |
|
| Q |
223 |
aggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
| || |||||||| |||||||||||||||||| |
|
|
| T |
23479204 |
atgcatcccacatatctttagcggtcttacaat |
23479172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 22851454 - 22851685
Alignment:
| Q |
23 |
catcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggaga |
122 |
Q |
| |
|
||||| |||| ||||||||| ||| ||||||||| || || || | |||| ||| || | ||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
22851454 |
catctcaaaattttattagtgcaatcttggtttgaaattgttttaccaaggttttgcaacttgtttacaatatgagtaaatctcatttgcatggaggaga |
22851553 |
T |
|
| Q |
123 |
tggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
222 |
Q |
| |
|
|||||| |||||| |||||| |||| || | | ||||||| | | |||||||||||||||||| ||||| |||||| | || || || | |||||| | |
|
|
| T |
22851554 |
tggtttcaccatctttcatg-caaaaaagctcatattgttgcacaagggtattaattttttattgtttaacttcatcgattccttcgtgaagggtttcca |
22851652 |
T |
|
| Q |
223 |
aggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
| || |||||||| |||| | ||||||||||| |
|
|
| T |
22851653 |
atgcatcccacatatctttggaggtcttacaat |
22851685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 13119642 - 13119555
Alignment:
| Q |
157 |
attgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagc |
244 |
Q |
| |
|
|||||||| ||| |||||||| ||| |||| || ||||| |||||||||||||||| || || || |||||||||||| ||||||| |
|
|
| T |
13119642 |
attgttgagtgagtgtattaatatttgattggttgacatcttcggtaccctcatggagagtctccaaagcgtcccacatttctttagc |
13119555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 8114569 - 8114798
Alignment:
| Q |
23 |
catcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggaga |
122 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| || || || ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8114569 |
catcttaaaaccttattagtgaaatcttggtttgagatggtctttcctaagttttataatttgttaacaatgtgagtgaatctcatttgcatggaggaga |
8114668 |
T |
|
| Q |
123 |
tggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcga |
222 |
Q |
| |
|
|||||| |||||||| |||||| ||||| | | |||||| |||| |||| | |||| ||||||| || || |||||||||||||||| |||||| | |
|
|
| T |
8114669 |
tggtttcaccatcctccatgtg--aatagttcatattgttagatgagaatattga-ttttgattgcttcacgtcttcggtaccctcatggagggtttcca |
8114765 |
T |
|
| Q |
223 |
aggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
|||| ||||| ||| |||||| ||| ||||||| |
|
|
| T |
8114766 |
aggcatcccatattgctttagaggtattacaat |
8114798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 13606097 - 13606261
Alignment:
| Q |
90 |
caatgtgagtgaatctcattttcatggaggagatggttttaccatccttcatgtgaaaataggttaaattgttgaatgaag-gtattaattttttattgc |
188 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| || |||||||| |||| ||||| || | | ||||||| | || | ||||||||||||||||| |
|
|
| T |
13606097 |
caatatgagtgaatctcatttgcatggaggagatggattcaccatcctccatg-gaaaaaagctcatattgttgca-gatgagtattaattttttattgt |
13606194 |
T |
|
| Q |
189 |
ttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
|||||||||||||| || |||| | |||||| || || |||||||| |||||||||||||||||| |
|
|
| T |
13606195 |
ttaacatcatcggttccttcataaagggtttcaaatgcatcccacatagctttagcggtcttacaat |
13606261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 14751611 - 14751802
Alignment:
| Q |
76 |
ttgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtatt |
175 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| |||||||||||| |||| |||||| | ||||| |||||| | ||||||| || | ||| || |
|
|
| T |
14751611 |
ttgtaatttgttcacaatgtgagtgaatctcatttgcatggaggagatagtttcaccatcttccatgt-aaaataacgcatattgttggataagggtgtt |
14751709 |
T |
|
| Q |
176 |
aattttttattgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaatttaaaactgagtg |
268 |
Q |
| |
|
||||||||||| || || || ||| | |||| |||| ||||| |||||||| | |||| |||||| ||||||||||| | |||| ||||| |
|
|
| T |
14751710 |
gattttttattgtttgacgtcctcgatgtcctcctggagcgtttctaaggcgtcacccattgctttagaggtcttacaatgtgaaaccgagtg |
14751802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42643257 - 42643226
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcatcttaaaa |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42643257 |
tggttgtacaaatatcatttctcatcttaaaa |
42643226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 281
Target Start/End: Complemental strand, 29800163 - 29799918
Alignment:
| Q |
35 |
ttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttaccat |
134 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || || || ||||| || ||||||||||||||| ||||||| ||||||||| ||||||| ||||| |
|
|
| T |
29800163 |
ttattagtacaatattggtttgagatggcatttcctaagttttctaatttgtgaacaatgtgagtgaacctcatttgcatggaggatatggtttcaccat |
29800064 |
T |
|
| Q |
135 |
ccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccaca |
234 |
Q |
| |
|
||| ||||||||| || | | |||||| |||| | |||| | |||| ||| ||||||| | | |||||| ||||||| |||||| |||| || ||||| |
|
|
| T |
29800063 |
cctccatgtgaaag-agatcatcttgttggatgatgatattgaattttgatttcttaacacccttggtaccttcatggagggtttccaaggtgtaccaca |
29799965 |
T |
|
| Q |
235 |
ttactttagcggtcttacaatttaaaactgagtgatactcgtttacg |
281 |
Q |
| |
|
|| | |||| |||||| ||| | | || |||||||||||||||||| |
|
|
| T |
29799964 |
ttgccttagtagtcttaaaatgtgagaccgagtgatactcgtttacg |
29799918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 16373779 - 16374025
Alignment:
| Q |
25 |
tcttaaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatg |
124 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||| ||||||| || ||| |||| ||||||||| ||| ||| ||||||| ||||||||||||| |
|
|
| T |
16373779 |
tcttaacactttgttagtacaatcttggtttgagatgtcttttcataagttttgcaatttgttaacaata-gagcgaacctcatttgcatggaggagatg |
16373877 |
T |
|
| Q |
125 |
gttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcgaag |
224 |
Q |
| |
|
| || | |||| | |||| |||| || | | ||||| || | |||||||||||||||||||| || || | ||||| |||||||| ||||| || |
|
|
| T |
16373878 |
gattcatcatcttccatgcgaaag-agttcatattgtgtgataagagtattaattttttattgcttgacgtctttggtactctcatggagagtttccaaa |
16373976 |
T |
|
| Q |
225 |
gcgtcccacattactttagcggtcttacaatttaaaactgagtgatact |
273 |
Q |
| |
|
|||||||||||| | ||||||||| |||||| | |||| |||||||||| |
|
|
| T |
16373977 |
gcgtcccacattgccttagcggtcatacaatatgaaaccgagtgatact |
16374025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 25801851 - 25801880
Alignment:
| Q |
1 |
tggttgtacaaatatcatttctcatcttaa |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25801851 |
tggttgtacaaatatcatttctcatcttaa |
25801880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 24453459 - 24453617
Alignment:
| Q |
34 |
tttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttacca |
133 |
Q |
| |
|
||||||||| ||| ||||||| ||||| ||||| ||||| |||||| | ||||||||| |||||||| ||||||| ||| |||||||||| || |||| |
|
|
| T |
24453459 |
tttattagtgcaatcttggtttaagatgtcctttcctaggttttgtaacttgttaacaatatgagtgaacctcatttccatagaggagatggattcacca |
24453558 |
T |
|
| Q |
134 |
tccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaac |
193 |
Q |
| |
|
|||| |||| ||||| || | | |||||||||||| ||||||||||| |||||||||| |
|
|
| T |
24453559 |
tcctccatgcgaaaa-agttcatattgttgaatgagagtattaattttagattgcttaac |
24453617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 22905077 - 22904891
Alignment:
| Q |
85 |
gttaacaatgtgagtgaatctcattttcatggaggagatggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaatttttta |
184 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||| ||||| | | |||||| |||| |||| | |||| | |
|
|
| T |
22905077 |
gttaacaatatgagtgaagctcatttgcatggaggagatggtttcaccatcctccatgtg--aatagttcatattgttagatgagaatattga-ttttga |
22904981 |
T |
|
| Q |
185 |
ttgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaatttaaaactgagtgatactc |
274 |
Q |
| |
|
|||||| || || |||||||||||||||| |||||| || || ||| | ||| | ||||||| |||||||| | |||| || |||||||| |
|
|
| T |
22904980 |
ttgcttcacgtcttcggtaccctcatggagggtttccaaagcatccaatattgccttagcggccttacaatgtgaaaccgattgatactc |
22904891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 22725605 - 22725507
Alignment:
| Q |
157 |
attgttgaatgaaggtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
||||||| ||| |||||| |||||| ||| |||||| || |||||||||||| ||| | |||| ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
22725605 |
attgttggatgtgggtattgatttttgatttcttaacgtcctcggtaccctcaaggaggctttccaaggcgtcccatattgctttagaggtcttacaat |
22725507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 17794478 - 17794519
Alignment:
| Q |
76 |
ttgtaattagttaacaatgtgagtgaatctcattttcatgga |
117 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
17794478 |
ttgtaacttgttaacaatgtgagtgaatctcatttacatgga |
17794519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 35681376 - 35681491
Alignment:
| Q |
32 |
actttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttac |
131 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| || || |||||||| |||||||||||||||| | ||||||| |||| |||||| ||||| || |
|
|
| T |
35681376 |
actttgttagtacaagcttggtttgagatgtcttttcctaagttttgtaatttgttaacaatgtgagtggacctcatttgcatgaaggagacggtttcac |
35681475 |
T |
|
| Q |
132 |
catccttcatgtgaaa |
147 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
35681476 |
catcctccatgtgaaa |
35681491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0767 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0767
Description:
Target: scaffold0767; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 918 - 1041
Alignment:
| Q |
95 |
tgagtgaatctcattttcatggaggagatggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaaca |
194 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || |||||||| |||||||||| || | | ||||||| | | |||||||||||||||| |||||| |
|
|
| T |
918 |
tgagtgaatctcatttgcatggaggatatggattcaccatcctccatgtgaaaa-agctcatattgttgcacaagtgtattaattttttattctttaaca |
1016 |
T |
|
| Q |
195 |
tcatcggtaccctcatggaaggttt |
219 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
1017 |
tcatcggtttcctcatgaaaggttt |
1041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1817 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1817
Description:
Target: scaffold1817; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 786 - 941
Alignment:
| Q |
97 |
agtgaatctcattttcatggaggagatggttttaccatccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatc |
196 |
Q |
| |
|
|||||||||||||| ||||||| |||||| || |||||||| ||| ||||| || | | ||||||| | | |||||||||||||||||| ||||||| |
|
|
| T |
786 |
agtgaatctcatttgcatggagaagatggattcaccatcctccatacgaaaa-agctgatattgttgcacaagggtattaattttttattg--taacatc |
882 |
T |
|
| Q |
197 |
atcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaat |
255 |
Q |
| |
|
|| ||| || ||||| | |||||| || || |||||||| |||||||||||||||||| |
|
|
| T |
883 |
attggttccttcatgaagggtttccaatgcatcccacatagctttagcggtcttacaat |
941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 7703 - 7597
Alignment:
| Q |
29 |
aaaactttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttt |
128 |
Q |
| |
|
|||| ||||||||||||| ||||||||| || ||||| | |||| ||| |||| ||| ||||| |||||||||||||||| | |||| |||||||||| |
|
|
| T |
7703 |
aaaattttattagtacaatcttggtttgaaattgtcttaccaaggttttgcaatttgtttacaatatgagtgaatctcatttgcctggaagagatggttt |
7604 |
T |
|
| Q |
129 |
taccatc |
135 |
Q |
| |
|
|||||| |
|
|
| T |
7603 |
caccatc |
7597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 14986543 - 14986710
Alignment:
| Q |
34 |
tttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttacca |
133 |
Q |
| |
|
||||||||| ||| ||||||||| || | ||| | |||| ||| |||| ||| ||||| |||||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
14986543 |
tttattagtgcaatcttggtttgaaattgccttaccaaggttttgcaatttgtttacaatatgagtgaatcacatttgcatggaggagatggattcacca |
14986642 |
T |
|
| Q |
134 |
tccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggt |
202 |
Q |
| |
|
||| |||| ||||| || | | ||||||| | | |||||||||||||||||| || ||||| ||||| |
|
|
| T |
14986643 |
ccctccatgcgaaaa-agatcatattgttgcacaatggtattaattttttattgtttgacatcgtcggt |
14986710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 15416154 - 15416321
Alignment:
| Q |
34 |
tttattagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggaggagatggttttacca |
133 |
Q |
| |
|
||||||||| ||| ||||||||| || | ||| | |||| ||| |||| ||| ||||| |||||||||| ||||| |||||||||||||| || |||| |
|
|
| T |
15416154 |
tttattagtgcaatcttggtttgaaattgccttaccaaggttttgcaatttgtttacaatatgagtgaatcacatttgcatggaggagatggattcacca |
15416253 |
T |
|
| Q |
134 |
tccttcatgtgaaaataggttaaattgttgaatgaaggtattaattttttattgcttaacatcatcggt |
202 |
Q |
| |
|
||| |||| ||||| || | | ||||||| | | |||||||||||||||||| || ||||| ||||| |
|
|
| T |
15416254 |
ccctccatgcgaaaa-agatcatattgttgcacaatggtattaattttttattgtttgacatcgtcggt |
15416321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 16189271 - 16189190
Alignment:
| Q |
38 |
ttagtacaaatttggtttgagatggtctttcataggtattgtaattagttaacaatgtgagtgaatctcattttcatggagg |
119 |
Q |
| |
|
||||||||| ||||||| ||||| | |||| || || |||||||| || ||||||||||||||| ||||||| |||||||| |
|
|
| T |
16189271 |
ttagtacaatcttggttttagatgctatttcctaagttttgtaatttgtgaacaatgtgagtgaacctcatttgcatggagg |
16189190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 220963 - 220860
Alignment:
| Q |
171 |
gtattaattttttattgcttaacatcatcggtaccctcatggaaggtttcgaaggcgtcccacattactttagcggtcttacaatttaaaactgagtgat |
270 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||||||| ||||| ||||||| ||||| | ||||| || ||||| | |||||||||||||| |
|
|
| T |
220963 |
gtattgatttttgattgattaacttcatcggtaccttcatggagagtttccaaggcgtagtacattgccttagcagttttacattataaaactgagtgat |
220864 |
T |
|
| Q |
271 |
actc |
274 |
Q |
| |
|
|||| |
|
|
| T |
220863 |
actc |
220860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 13697 - 13656
Alignment:
| Q |
76 |
ttgtaattagttaacaatgtgagtgaatctcattttcatgga |
117 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
13697 |
ttgtaacttgttaacaatgtgagtgaatctcatttacatgga |
13656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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