View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_high_3 (Length: 592)
Name: NF7883_high_3
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 10575973 - 10576553
Alignment:
| Q |
1 |
ctattgtaagctattaagttctgtgttgaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacgtcttgtcctaacgaagaccc |
100 |
Q |
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| T |
10575973 |
ctattgtacgctattaagttctgtgttcaatattgcatctgtgattaacataatcaccataaattatgttaatcagaacttcttgtcccaaagaagaccc |
10576072 |
T |
|
| Q |
101 |
acatttttatagtgggtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcctggtggccaatg |
200 |
Q |
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| T |
10576073 |
acattcttatagtgagtagctcttgccatgctatcttcatcataaattttgcatttattcacaaggatagaaaaacattagcatctcctggtggccaatg |
10576172 |
T |
|
| Q |
201 |
aattgcatatgcaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgcttcagttcaaaga |
300 |
Q |
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| T |
10576173 |
aattgcatatacaccattatagtgggacagaacatagactatttctcaaatttgactgcattgtcagctacgaacgtattcccttgcttcagttcaaaga |
10576272 |
T |
|
| Q |
301 |
cttccacttctacagcctctgcttccatattccggcgag-nnnnnnnccaccaatgttcaacctcttatgacaaaatgaaagcaccaaaggaataacaga |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10576273 |
cttccacttctacagcctctgcttccatattccggcgagttttttttccaccaatgttcaacctcttctgacaaaatgaaagcaccaaaggaataacaga |
10576372 |
T |
|
| Q |
400 |
agatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcaaaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtcacaattc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10576373 |
agatcttagtgtacaaaatgcgcaaaaggtgcagaatgttcagaattttgaaggaaaaggaataacagaggagaggagaaaagagttcttgtcacaattc |
10576472 |
T |
|
| Q |
500 |
atgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctctggggaccctttgatgt |
581 |
Q |
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| T |
10576473 |
atgcatcctcatatatgcacccaattcaagtcacaaagcctctcaattgagagttagttagcctct-gggaccctttgatgt |
10576553 |
T |
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