View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7883_high_8 (Length: 405)

Name: NF7883_high_8
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7883_high_8
NF7883_high_8
[»] chr4 (4 HSPs)
chr4 (2-405)||(42729474-42729879)
chr4 (334-405)||(13228705-13228778)
chr4 (218-399)||(50158083-50158268)
chr4 (2-56)||(312143-312197)
[»] chr6 (3 HSPs)
chr6 (44-329)||(24174699-24174988)
chr6 (333-405)||(24175020-24175094)
chr6 (334-405)||(1599695-1599768)
[»] chr3 (4 HSPs)
chr3 (105-402)||(6087851-6088152)
chr3 (2-76)||(50239325-50239399)
chr3 (334-405)||(50331959-50332032)
chr3 (348-397)||(431997-432046)
[»] chr2 (5 HSPs)
chr2 (9-405)||(36719766-36720152)
chr2 (128-274)||(34723028-34723173)
chr2 (2-62)||(2593294-2593354)
chr2 (370-405)||(3395453-3395488)
chr2 (120-173)||(36729506-36729559)
[»] chr8 (8 HSPs)
chr8 (189-360)||(14373747-14373922)
chr8 (2-76)||(40114449-40114523)
chr8 (9-76)||(16221892-16221959)
chr8 (9-67)||(14373568-14373626)
chr8 (334-405)||(23141796-23141869)
chr8 (2-76)||(41529035-41529109)
chr8 (334-405)||(42797286-42797359)
chr8 (334-403)||(13756549-13756620)
[»] chr7 (2 HSPs)
chr7 (202-310)||(24708312-24708421)
chr7 (348-399)||(22528934-22528985)
[»] chr1 (1 HSPs)
chr1 (334-403)||(43387102-43387173)
[»] scaffold0021 (1 HSPs)
scaffold0021 (238-311)||(129154-129228)
[»] scaffold0114 (1 HSPs)
scaffold0114 (8-76)||(34493-34561)
[»] scaffold0284 (1 HSPs)
scaffold0284 (2-76)||(2998-3072)
[»] chr5 (2 HSPs)
chr5 (22-76)||(32259413-32259467)
chr5 (334-405)||(38015933-38016006)
[»] scaffold1312 (1 HSPs)
scaffold1312 (348-405)||(13-70)
[»] scaffold0050 (1 HSPs)
scaffold0050 (334-405)||(11612-11680)
[»] scaffold0022 (2 HSPs)
scaffold0022 (206-307)||(126381-126482)
scaffold0022 (4-44)||(126190-126230)


Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 2 - 405
Target Start/End: Complemental strand, 42729879 - 42729474
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaatcccacactgaatataaaagtgtagg 101  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42729879 ccgtgccaagaacgggttgaaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaatcccacactgaatataaaagtgtagg 42729780  T
Q  102 ttgaacaacaaacaagagaaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42729779 ttgaacaacaaacaagagaaaaatttatatacttaagtcttaaaatgctggatgaagatgtgatataattcttacatgtatgaccgatctttctccaatg 42729680  T
Q  202 tgtcgatccacatcgttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaa 301  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42729679 tgtcgatccacatcgttgttggctcccccaaaaggcccaacggtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaa 42729580  T
Q  302 tcacggacacc--gagtttgacgcttaatggaattgttaacgtgtcaagtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataa 399  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42729579 tcacggacaccgagagtttgacgcttaatggaattgttaacgtgtcaagtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataa 42729480  T
Q  400 gtgaga 405  Q
    ||||||    
T  42729479 gtgaga 42729474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 13228705 - 13228778
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| ||||||||||||||||||||||||    
T  13228705 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 13228778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 399
Target Start/End: Original strand, 50158083 - 50158268
Alignment:
Q  218 tgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaatcacgg-acaccgagt 316  Q
    |||||||||||  | ||||||||||||||| || ||| |   |||||||||| ||||  | ||| ||||||||||||||||  ||||||| |||  ||||    
T  50158083 tgttggctcccttagaagacccaacagtggcatgatatccttgttcaacattttgggagagcgg-agtggttcttggtggtcgatcacggcacagagagt 50158181  T
Q  317 ttgacgcttaatg--gaattgttaacgtgtcaag--tgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataa 399  Q
    ||||| |||||||  ||  |||||| ||||||||  ||||||||| ||  ||| | ||||||| |||| |||||||| |||||||||    
T  50158182 ttgacacttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaagagtatatgttgagcaacatataa 50158268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 312143 - 312197
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgat 56  Q
    |||| ||||||||||||| ||||||||| ||| |||||||| | |||||||||||    
T  312143 ccgtgccaagcacgggttagaatttcgtcatagttgagggatacaatattatgat 312197  T

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Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 44 - 329
Target Start/End: Original strand, 24174699 - 24174988
Alignment:
Q  44 agaatattatgatttatcaagtgtgagttaaa-tcccacactgaatataaaagtgtaggttgaacaacaaacaagagaaaaatttatatacttaagtctt 142  Q
    |||||||| |||| |||||||||||| ||||| ||| ||| |||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||||    
T  24174699 agaatattgtgatgtatcaagtgtgaattaaagtccaacattgaatataaaagcgtaagttgaacaacaaataagagaaaaacttatatacttaagtctt 24174798  T
Q  143 aaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgtcgatccacatcgttgttggctcccccaaaagacccaac 242  Q
    ||||| ||| |||||||||||||   |||||||| |||||||| | ||||||||||||||||| |||||||||| |||||||||| |||||||  |||||    
T  24174799 aaaatgttggatgaagatgtgattccattcttacttgtatgactgctctttctccaatgtgtcaatccacatcggtgttggctcctccaaaaggtccaac 24174898  T
Q  243 agtggtatcataactcagttcaacattgt-ggggtaacgggagtggttcttggtggtgaatcacggaca--ccgagtttgacgcttaatg 329  Q
    | ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||| |||    |||||||||||||||||    
T  24174899 aatggtatcataactcagttcaacattgtgggggtaatgggagtggttcatggtgatgaataacgaacaatgagagtttgacgcttaatg 24174988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 24175020 - 24175094
Alignment:
Q  333 ttgttaacgtgtcaagtgag--ttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    ||||||| |||||||||| |  ||||||||||  ||||||||||||| || |||||||| |||||||||||||||    
T  24175020 ttgttaatgtgtcaagtgtgaattaaaattcagtaatgtatgcaataatatatgttgagcaacatataagtgaga 24175094  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 1599695 - 1599768
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| ||||||||||||||||||||||||    
T  1599695 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 1599768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 105 - 402
Target Start/End: Complemental strand, 6088152 - 6087851
Alignment:
Q  105 aacaacaaacaagagaaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgt 204  Q
    ||||||||| ||| |||||||||||||||||||  |||||||| ||| ||||||||||||||||||||| || || ||||  | ||||||||||||||||    
T  6088152 aacaacaaataagggaaaaatttatatacttaaaccttaaaattttggatgaagatgtgatataattctcacttgaatgagtgctctttctccaatgtgt 6088053  T
Q  205 cgatccacatcgttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaatca 304  Q
    |||||||||||  |||| ||||||| || |  || |||| || |||| |||||||| ||||||||||||| ||  ||||||||||||| |||||||||||    
T  6088052 cgatccacatcagtgtttgctccccaaataagccaaacaatgatatcgtaactcaggtcaacattgtgggttagtgggagtggttcttagtggtgaatca 6087953  T
Q  305 cggacaccg--agtttgacgcttaatg--gaattgttaacgtgtcaagtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataag 400  Q
    | ||||| |  |||||||| | |||||  ||  | ||||  | |||||||||||||||||| ||||||||||||| | || |||||||| ||||||||||    
T  6087952 cagacactgacagtttgacacctaatgaagagattttaatatctcaagtgagttaaaattccacaatgtatgcaagattagatgttgagcaacatataag 6087853  T
Q  401 tg 402  Q
    ||    
T  6087852 tg 6087851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 50239325 - 50239399
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||| ||||||||||| | ||||||||| ||  |||||||||| ||||||||||| |||| ||||| ||||||||    
T  50239325 ccgtgccaagcacgggctagaatttcgtcatggttgagggagacaatattatgatgtatctagtgtcagttaaat 50239399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 50332032 - 50331959
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| ||||||||||||||||||||||||    
T  50332032 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgaga 50331959  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 431997 - 432046
Alignment:
Q  348 gtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatat 397  Q
    |||||||||||||| ||| || |||||| |||| ||||||||||||||||    
T  431997 gtgagttaaaattcgacattggatgcaagagtatatgttgagaaacatat 432046  T

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Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 36719766 - 36720152
Alignment:
Q  9 aagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaa-tcccacactgaatataaaagtgtaggttgaac 107  Q
    ||||||||| | | |||| || ||| ||||||||||  ||||| |||| ||| |||||||| ||||| ||||||| ||||||||| ||| ||||||||||    
T  36719766 aagcacgggctagcattttgtcatatttgagggagacgatattgtgatgtat-aagtgtgatttaaagtcccacattgaatataagagtataggttgaac 36719864  T
Q  108 aacaaacaagagaaa-aatttatatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgtcg 206  Q
    |||||| ||| |||| || ||||||||| | |  ||||||  ||| ||||||||||||||| |||||||| ||||  ||   |||||||| |||||||      
T  36719865 aacaaataagggaaacaacttatatactcaggctttaaaaagttggatgaagatgtgatatcattcttacttgtacaactactctttctctaatgtgt-- 36719962  T
Q  207 atccacatcgttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaatcacg 306  Q
                  |||||||||||||||| | |||||| | |||||||| || |||||||||||||| ||  |||||||||| ||||||||||||||||    
T  36719963 --------------tggctcccccaaaagatcaaacagttgcatcataacccaattcaacattgtgggatagtgggagtggtt-ttggtggtgaatcacg 36720047  T
Q  307 gacaccgag--tttgacgcttaatg--gaattgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataag 400  Q
     |||| |||  |||||||| |||||  ||  |||||| ||||||||||  ||||||||||| ||||||| ||||||| || |||||||| ||||||||||    
T  36720048 aacactgagagtttgacgcctaatgaagagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataag 36720147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 34723028 - 34723173
Alignment:
Q  128 atatacttaagtcttaaaatattgaatgaagatgtgatataattcttacatgtatgaccgatctttctccaatgtgtcgatccacatcgttgttggctcc 227  Q
    |||||||||||||||| ||| |||||||| |||||| ||| ||| | || ||||||   | |||||||| ||||| |||||||||||   ||||||||||    
T  34723028 atatacttaagtcttacaattttgaatgatgatgtggtatcattttcacttgtatggttgttctttctctaatgt-tcgatccacattagtgttggctcc 34723126  T
Q  228 cccaaaagacccaacagtggtatcataactcagttcaacattgtggg 274  Q
    || | |||  |||||  |||||||||| | | |||||||||| ||||    
T  34723127 cctataaggtccaacgatggtatcatatcccggttcaacattatggg 34723173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 2593354 - 2593294
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatca 62  Q
    |||| ||||||||||| | |||||||  |||||||||||||||||||||| |||| |||||    
T  2593354 ccgtgccaagcacgggctagaatttccatatacttgagggagagaatattttgatgtatca 2593294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 3395488 - 3395453
Alignment:
Q  370 atgcaatagtacatgttgagaaacatataagtgaga 405  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3395488 atgcaatagtagatgttgagaaacatataagtgaga 3395453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 36729559 - 36729506
Alignment:
Q  120 aaaaatttatatacttaagtcttaaaatattgaatgaagatgtgatataattct 173  Q
    ||||| |||||||||| ||||||||||| ||||||||| ||||| ||| |||||    
T  36729559 aaaaacttatatacttgagtcttaaaattttgaatgaatatgtggtatcattct 36729506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 360
Target Start/End: Original strand, 14373747 - 14373922
Alignment:
Q  189 tctttctccaatgtgtcgatccacatcgttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggt 288  Q
    ||||||| |||| |||||||||||| |  | ||| |||| ||| ||||||||||| | |||||||| ||| |||||||||||||||  | ||| ||||||    
T  14373747 tctttcttcaatatgtcgatccacaacagtattgactcctccagaagacccaacaattgtatcatatctcggttcaacattgtgggagagcggaagtggt 14373846  T
Q  289 tcttggtggtgaatcacggacac--cgagtttgacgcttaatgga--attgttaacgtgtcaagtgagttaaaatt 360  Q
    ||| ||||||| | |||| ||||   |||||  || |||| ||||  | |||||| ||||||||||||||||||||    
T  14373847 tctaggtggtggaacacgcacacggagagttcaacacttagtggagtaatgttaatgtgtcaagtgagttaaaatt 14373922  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 40114523 - 40114449
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||| ||||||||||||| ||||||||| ||| |||||||||| ||||||||||| |||  ||||| ||||||||    
T  40114523 ccgtgccaagcacgggttagaatttcgtcatagttgagggagacaatattatgatgtatttagtgtcagttaaat 40114449  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 16221959 - 16221892
Alignment:
Q  9 aagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    ||||||||| | ||||||||| ||| |||||||||| ||||||||||| |||| ||||| ||||||||    
T  16221959 aagcacgggctagaatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat 16221892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 14373568 - 14373626
Alignment:
Q  9 aagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgt 67  Q
    ||||||||| | |||||||||||||||| ||| | |||||||| |||||||||||||||    
T  14373568 aagcacgggctagaatttcgttatacttaaggtaaagaatattgtgatttatcaagtgt 14373626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 23141869 - 23141796
Alignment:
Q  334 tgttaacgtgtcaagt--gagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    ||||||||||||||||  ||||||||||   ||| || ||||||||||| |||||||||||||||||| |||||    
T  23141869 tgttaacgtgtcaagtatgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgaga 23141796  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 41529109 - 41529035
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||| ||||||||||| | ||||||||| ||| | |||||||| ||||||||||| |||| ||||| ||||||||    
T  41529109 ccgtgccaagcacgggctagaatttcgtcatagtcgagggagacaatattatgatgtatctagtgtcagttaaat 41529035  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 42797359 - 42797286
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| ||||||||||||||||||||||||    
T  42797359 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgaga 42797286  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 13756549 - 13756620
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtga 403  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| |||||||||||||| |||||||    
T  13756549 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtga 13756620  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 24708312 - 24708421
Alignment:
Q  202 tgtcgatccacatc-gttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtga 300  Q
    |||||||||||||| ||  ||| |||||||| ||| ||||||| |||||||||| | ||||| |||||||||||| |||  ||||||||||| || |||     
T  24708312 tgtcgatccacatctgtatttgcctcccccacaagtcccaacaatggtatcatatcccagtttaacattgtgggggaacaagagtggttcttagtagtgg 24708411  T
Q  301 atcacggaca 310  Q
    ||||| ||||    
T  24708412 atcactgaca 24708421  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 22528934 - 22528985
Alignment:
Q  348 gtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataa 399  Q
    |||||||||||||  ||| ||||||||| |||| ||||||||||||||||||    
T  22528934 gtgagttaaaattttacattgtatgcaagagtaaatgttgagaaacatataa 22528985  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 43387173 - 43387102
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtga 403  Q
    |||||| ||||||||||  ||||||||||  ||| || ||||||||||| ||||||||||||||||||||||    
T  43387173 tgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtga 43387102  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 129228 - 129154
Alignment:
Q  238 ccaacagtggtatcataactcagttcaacattgtg-gggtaacgggagtggttcttggtggtgaatcacggacac 311  Q
    ||||||||||||||| | | |||||||| |||| | ||| | ||||||||||||||||||||| |||||||||||    
T  129228 ccaacagtggtatcacatcccagttcaatattgcgaggggagcgggagtggttcttggtggtggatcacggacac 129154  T

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Target: scaffold0114 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 34493 - 34561
Alignment:
Q  8 caagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||||||||| | ||||||||| ||| |||| ||||| ||||||||||| |||| ||||| ||||||||    
T  34493 caagcacgggctagaatttcgtcatagttgatggagacaatattatgatgtatctagtgtcagttaaat 34561  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 3072 - 2998
Alignment:
Q  2 ccgtaccaagcacgggttggaatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||| ||||||||||| | ||||||||| | | |||||| ||| ||||||||||| |||| ||||| ||||||||    
T  3072 ccgtgccaagcacgggctagaatttcgtcaaagttgaggtagacaatattatgatgtatctagtgtcagttaaat 2998  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 32259467 - 32259413
Alignment:
Q  22 aatttcgttatacttgagggagagaatattatgatttatcaagtgtgagttaaat 76  Q
    |||||||| ||| |||||||||| ||||||||||| |||| ||||| ||||||||    
T  32259467 aatttcgtcatagttgagggagacaatattatgatgtatctagtgtcagttaaat 32259413  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 38016006 - 38015933
Alignment:
Q  334 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| ||||||||||  |||||||||   ||| || ||||||||||| |||||||| |||||||||||||||    
T  38016006 tgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgaga 38015933  T

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Target: scaffold1312 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 13 - 70
Alignment:
Q  348 gtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||||||| ||| ||| |||||||||||||| || ||||| |||||||||| ||||    
T  13 gtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgaga 70  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 11680 - 11612
Alignment:
Q  334 tgttaacgtgtcaagtgagttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgaga 405  Q
    |||||| |||| |||||||||||||||||    ||||||||| |||| || ||||| |||||||||||||||    
T  11680 tgttaatgtgtaaagtgagttaaaattcag---tgtatgcaagagtaaatattgagcaacatataagtgaga 11612  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 126381 - 126482
Alignment:
Q  206 gatccacatcgttgttggctcccccaaaagacccaacagtggtatcataactcagttcaacattgtggggtaacgggagtggttcttggtggtgaatcac 305  Q
    |||||||| || |||||||||||  | ||| ||||||||||| || ||| | |||||||||||| |||||  |  | ||||||||||||||||  |||||    
T  126381 gatccacaccggtgttggctcccttagaaggcccaacagtggcatgatatcccagttcaacattttggggggaacgaagtggttcttggtggtcgatcac 126480  T
Q  306 gg 307  Q
    ||    
T  126481 gg 126482  T

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Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 126190 - 126230
Alignment:
Q  4 gtaccaagcacgggttggaatttcgttatacttgagggaga 44  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  126190 gtaccaagcacgggctagaatttcgtcatacttgagggaga 126230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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