View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_high_9 (Length: 377)
Name: NF7883_high_9
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 45 - 235
Target Start/End: Original strand, 31796965 - 31797155
Alignment:
| Q |
45 |
agttaaaggaaagcagatgaatataggcattgctaannnnnnnnagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaat |
144 |
Q |
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| T |
31796965 |
agttaaaggaaagcagatgaatataggcattgctaattttttttagtaatatttaacagtcagattattcgtgttgagcagttgataatgcgtttcaaat |
31797064 |
T |
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| Q |
145 |
acagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
235 |
Q |
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| T |
31797065 |
acagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
31797155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 232 - 367
Target Start/End: Original strand, 31797184 - 31797319
Alignment:
| Q |
232 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
331 |
Q |
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| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
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| Q |
332 |
atacaagtagttttgacatatcctttgaaatattct |
367 |
Q |
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| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattct |
31797319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 31789762 - 31789883
Alignment:
| Q |
106 |
agattattcgtgttgagcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaa |
205 |
Q |
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| T |
31789762 |
agattatttgtttttagcagttgatattgtgtttcatatacagtcttgctgatccattgaagtactgtttgcaggttactgggtttccctctccgcctaa |
31789861 |
T |
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| Q |
206 |
gacgaaagtgtatgcatctggt |
227 |
Q |
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| T |
31789862 |
gacgaaagtgtatgcatctggt |
31789883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 239 - 367
Target Start/End: Original strand, 31791048 - 31791175
Alignment:
| Q |
239 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
338 |
Q |
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| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacat-tgaggtacaag |
31791146 |
T |
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| Q |
339 |
tagttttgacatatcctttgaaatattct |
367 |
Q |
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| T |
31791147 |
tagttttgacatatcctttgaaatattct |
31791175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
199 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
235 |
Q |
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| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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