View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7883_low_1 (Length: 877)

Name: NF7883_low_1
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7883_low_1
NF7883_low_1
[»] chr4 (23 HSPs)
chr4 (269-700)||(41525086-41525514)
chr4 (172-516)||(16057356-16057698)
chr4 (271-516)||(30650792-30651034)
chr4 (271-540)||(16211753-16212013)
chr4 (150-516)||(53946892-53947263)
chr4 (2-144)||(16212143-16212285)
chr4 (5-142)||(16057148-16057285)
chr4 (2-144)||(53947311-53947453)
chr4 (8-137)||(41524830-41524959)
chr4 (23-144)||(30650489-30650610)
chr4 (448-537)||(6406390-6406479)
chr4 (420-537)||(16252793-16252912)
chr4 (420-537)||(17985434-17985553)
chr4 (420-537)||(18106076-18106195)
chr4 (420-537)||(40921073-40921192)
chr4 (450-537)||(52498543-52498630)
chr4 (450-537)||(13403584-13403671)
chr4 (450-533)||(26330638-26330721)
chr4 (176-255)||(30650684-30650763)
chr4 (720-860)||(522665-522807)
chr4 (451-493)||(17421941-17421983)
chr4 (649-698)||(6406228-6406277)
chr4 (451-548)||(40883896-40883993)
[»] chr1 (37 HSPs)
chr1 (170-711)||(19869013-19869536)
chr1 (266-571)||(13404170-13404475)
chr1 (150-537)||(49332444-49332830)
chr1 (420-691)||(2652880-2653153)
chr1 (150-516)||(18062806-18063165)
chr1 (271-497)||(41207732-41207961)
chr1 (420-691)||(50940540-50940811)
chr1 (2-144)||(49332254-49332396)
chr1 (5-144)||(13404669-13404809)
chr1 (8-142)||(18063215-18063349)
chr1 (172-516)||(25824035-25824383)
chr1 (603-703)||(13404077-13404177)
chr1 (150-261)||(13404512-13404623)
chr1 (420-538)||(30209564-30209684)
chr1 (5-144)||(41207420-41207550)
chr1 (8-139)||(25824458-25824593)
chr1 (597-691)||(30210382-30210476)
chr1 (448-537)||(1186979-1187068)
chr1 (420-537)||(2115381-2115500)
chr1 (420-537)||(41544683-41544802)
chr1 (420-537)||(21885694-21885813)
chr1 (420-537)||(22406829-22406948)
chr1 (450-517)||(1968757-1968824)
chr1 (420-537)||(16154263-16154382)
chr1 (420-537)||(21457917-21458036)
chr1 (454-537)||(18097507-18097590)
chr1 (420-516)||(34822403-34822501)
chr1 (450-537)||(42033604-42033691)
chr1 (720-860)||(1975152-1975294)
chr1 (720-860)||(1982518-1982660)
chr1 (451-497)||(1982687-1982733)
chr1 (451-497)||(1990105-1990151)
chr1 (450-516)||(21782108-21782174)
chr1 (742-812)||(50940667-50940737)
chr1 (448-516)||(12418247-12418316)
chr1 (819-860)||(19869058-19869099)
chr1 (172-253)||(41207620-41207701)
[»] chr7 (29 HSPs)
chr7 (271-705)||(15989078-15989499)
chr7 (170-571)||(17220153-17220549)
chr7 (271-516)||(9006138-9006380)
chr7 (8-144)||(12697112-12697248)
chr7 (5-144)||(12629946-12630085)
chr7 (5-144)||(17220633-17220771)
chr7 (45-144)||(12561177-12561276)
chr7 (21-144)||(15989700-15989814)
chr7 (717-779)||(40701426-40701488)
chr7 (420-537)||(32108197-32108316)
chr7 (172-255)||(12561346-12561429)
chr7 (420-537)||(9546086-9546205)
chr7 (420-537)||(32097760-32097879)
chr7 (5-128)||(9005754-9005868)
chr7 (420-537)||(9535803-9535922)
chr7 (420-537)||(22964815-22964934)
chr7 (420-537)||(42620560-42620679)
chr7 (420-537)||(46496272-46496391)
chr7 (420-537)||(46506884-46507003)
chr7 (178-283)||(9005943-9006049)
chr7 (649-706)||(9006519-9006576)
chr7 (430-516)||(14114666-14114754)
chr7 (430-516)||(14424316-14424404)
chr7 (430-590)||(5616019-5616181)
chr7 (420-537)||(16132624-16132743)
chr7 (420-537)||(16143188-16143307)
chr7 (720-860)||(31824201-31824343)
chr7 (648-706)||(33090796-33090854)
chr7 (448-497)||(13286399-13286448)
[»] scaffold0811 (3 HSPs)
scaffold0811 (338-725)||(3920-4304)
scaffold0811 (8-144)||(4561-4697)
scaffold0811 (177-255)||(4390-4468)
[»] scaffold0535 (2 HSPs)
scaffold0535 (181-616)||(1419-1843)
scaffold0535 (85-144)||(1940-1999)
[»] scaffold1468 (2 HSPs)
scaffold1468 (150-537)||(425-811)
scaffold1468 (2-144)||(235-377)
[»] scaffold0713 (2 HSPs)
scaffold0713 (413-714)||(5387-5687)
scaffold0713 (499-714)||(2760-2975)
[»] chr6 (30 HSPs)
chr6 (413-714)||(26139769-26140069)
chr6 (413-687)||(26019065-26019338)
chr6 (150-506)||(791841-792202)
chr6 (8-144)||(792250-792386)
chr6 (271-500)||(22224205-22224431)
chr6 (271-500)||(22250040-22250266)
chr6 (420-549)||(9762028-9762159)
chr6 (5-144)||(10841339-10841470)
chr6 (21-144)||(22224586-22224700)
chr6 (21-144)||(22250421-22250535)
chr6 (578-714)||(25508335-25508471)
chr6 (555-725)||(9761835-9762003)
chr6 (420-537)||(24922562-24922681)
chr6 (420-537)||(24931598-24931717)
chr6 (275-383)||(26018953-26019061)
chr6 (450-537)||(29539870-29539957)
chr6 (420-537)||(12454342-12454461)
chr6 (420-537)||(18159107-18159226)
chr6 (420-537)||(20911681-20911800)
chr6 (420-537)||(20926129-20926248)
chr6 (420-537)||(26425934-26426053)
chr6 (420-537)||(27788128-27788247)
chr6 (750-860)||(9761894-9762004)
chr6 (450-520)||(18200684-18200754)
chr6 (649-706)||(27787958-27788015)
chr6 (420-537)||(14790983-14791102)
chr6 (420-537)||(23777849-23777968)
chr6 (450-497)||(30658761-30658808)
chr6 (420-531)||(31356849-31356962)
chr6 (420-531)||(31366577-31366690)
[»] chr5 (11 HSPs)
chr5 (271-515)||(36313457-36313698)
chr5 (150-513)||(31104529-31104884)
chr5 (420-571)||(20480643-20480795)
chr5 (8-146)||(31104354-31104483)
chr5 (5-144)||(36313145-36313275)
chr5 (448-572)||(35985645-35985768)
chr5 (420-537)||(26192772-26192891)
chr5 (420-537)||(26203332-26203451)
chr5 (420-537)||(32069820-32069939)
chr5 (420-537)||(27411528-27411647)
chr5 (649-706)||(31105026-31105083)
[»] chr8 (18 HSPs)
chr8 (271-459)||(11431318-11431507)
chr8 (8-144)||(11431688-11431824)
chr8 (451-725)||(12841887-12842158)
chr8 (720-862)||(12841944-12842086)
chr8 (420-537)||(21446810-21446929)
chr8 (430-537)||(21988579-21988688)
chr8 (430-537)||(21998097-21998206)
chr8 (450-537)||(791149-791236)
chr8 (450-537)||(7757176-7757263)
chr8 (798-860)||(37295481-37295543)
chr8 (791-860)||(18536144-18536213)
chr8 (649-706)||(20098427-20098484)
chr8 (420-537)||(25034677-25034796)
chr8 (448-516)||(37295365-37295433)
chr8 (430-537)||(2690855-2690965)
chr8 (430-514)||(5867978-5868064)
chr8 (150-241)||(11431549-11431640)
chr8 (720-782)||(26362868-26362930)
[»] scaffold0053 (3 HSPs)
scaffold0053 (271-516)||(1408-1654)
scaffold0053 (5-144)||(3399-3529)
scaffold0053 (649-706)||(1225-1282)
[»] chr2 (16 HSPs)
chr2 (717-860)||(40409479-40409622)
chr2 (378-537)||(72675-72831)
chr2 (448-725)||(40409420-40409694)
chr2 (452-706)||(16135534-16135785)
chr2 (452-538)||(18618733-18618819)
chr2 (420-537)||(17488070-17488189)
chr2 (420-537)||(44639477-44639596)
chr2 (420-537)||(2999268-2999387)
chr2 (420-537)||(29131551-29131670)
chr2 (420-521)||(38930978-38931081)
chr2 (420-521)||(38958314-38958417)
chr2 (420-537)||(45014112-45014231)
chr2 (649-706)||(72524-72581)
chr2 (420-537)||(24697064-24697183)
chr2 (451-522)||(15479337-15479408)
chr2 (420-537)||(45024189-45024308)
[»] scaffold0004 (2 HSPs)
scaffold0004 (448-691)||(242096-242338)
scaffold0004 (717-856)||(242126-242265)
[»] chr3 (22 HSPs)
chr3 (448-571)||(29709802-29709924)
chr3 (448-549)||(11044746-11044847)
chr3 (605-714)||(29709679-29709788)
chr3 (648-722)||(21542670-21542744)
chr3 (454-564)||(21542807-21542917)
chr3 (420-537)||(8982703-8982822)
chr3 (450-537)||(25432272-25432359)
chr3 (649-706)||(10508554-10508611)
chr3 (420-537)||(12555-12674)
chr3 (420-537)||(1685883-1686002)
chr3 (420-537)||(6421682-6421801)
chr3 (420-537)||(6432122-6432241)
chr3 (420-537)||(8972120-8972239)
chr3 (420-537)||(10012795-10012914)
chr3 (420-537)||(12804855-12804974)
chr3 (420-537)||(16336010-16336129)
chr3 (450-521)||(20491467-20491538)
chr3 (717-782)||(21542785-21542850)
chr3 (451-571)||(17732308-17732428)
chr3 (451-571)||(19033539-19033659)
chr3 (451-497)||(24792856-24792902)
chr3 (430-537)||(55478611-55478720)
[»] scaffold0072 (1 HSPs)
scaffold0072 (463-572)||(28903-29012)
[»] scaffold0153 (1 HSPs)
scaffold0153 (5-144)||(64-194)
[»] scaffold0690 (1 HSPs)
scaffold0690 (450-537)||(4779-4866)
[»] scaffold0611 (1 HSPs)
scaffold0611 (420-537)||(7751-7870)
[»] scaffold0047 (1 HSPs)
scaffold0047 (420-537)||(75286-75405)
[»] scaffold0100 (1 HSPs)
scaffold0100 (420-537)||(52346-52465)
[»] scaffold0043 (1 HSPs)
scaffold0043 (450-537)||(93421-93508)
[»] scaffold0490 (1 HSPs)
scaffold0490 (451-537)||(12788-12874)
[»] scaffold0048 (1 HSPs)
scaffold0048 (420-531)||(87345-87458)
[»] scaffold0009 (1 HSPs)
scaffold0009 (451-517)||(267513-267579)
[»] scaffold0142 (1 HSPs)
scaffold0142 (448-537)||(29332-29421)
[»] scaffold0065 (1 HSPs)
scaffold0065 (450-531)||(15261-15342)
[»] scaffold0277 (1 HSPs)
scaffold0277 (420-537)||(19945-20063)
[»] scaffold0057 (1 HSPs)
scaffold0057 (756-812)||(65223-65280)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 269 - 700
Target Start/End: Original strand, 41525086 - 41525514
Alignment:
Q  269 gagttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatat 368  Q
    ||||||||||||||| |  |||||||  |||||||||||  | |||||||||||| |||||||||||||||||||||||| || |||| |||||||||||    
T  41525086 gagttcagaaggttgtttagaaggttgattagagcaaactcataaatcaatgtccacaccaagaacatgcaagaacagatatgacatgaacatatcatat 41525185  T
Q  369 gcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgt 468  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| |||||||||||||    |||||    
T  41525186 gcagaaaaggattttgactttggatcaagaaatcattaaaggcatctatggtgattaaaggattaatggactttgatagttcttggtatttg---tgtgt 41525282  T
Q  469 tcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaag 568  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||| |  ||||||  ||| |||||||||||||    
T  41525283 tcttgagtgattaactaagaaacaaacaaagtataaagcaaaccaagaatcatgtgatcaaagaacattaaggtctatgaactcagtcagagttcagaag 41525382  T
Q  569 gttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattc 668  Q
    ||||   | |||| ||||||||||||||||||  |||||||||||| || | |||| |||||||||  |||||||||| |||||||||||||||  | ||    
T  41525383 gttagccagagttcagaaggttcgaagatagttcagaaggttgttcttaagttttatcaagaacaagcccataaatatatgaacattatcaagagaagtc 41525482  T
Q  669 aaggctcacatgacataaataaatgtccagaa 700  Q
    ||||||||||||||||||||||| || |||||    
T  41525483 aaggctcacatgacataaataaaagttcagaa 41525514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 172 - 516
Target Start/End: Original strand, 16057356 - 16057698
Alignment:
Q  172 tgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatgaa-gaactcggaaaga 270  Q
    ||||||||||||| |||||||| |||| |||| |||||  | ||||||| | ||||  |||||||||||| || |||||||||| | |||| | ||| ||    
T  16057356 tgttgaagaacattagaatgtttagcacaaagtacaaccgtgaaaaaggaacgaacccagaagaaacattttgaagttcatatgtatgaacccagaagga 16057455  T
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    ||||||||||||||||  ||||||| |||||||||| | | |||||||||||| ||||||||||||||||||||| ||||| |||| ||||||| ||||     
T  16057456 gttcagaaggttgctcaaaaggttcattagagcaaatccataaatcaatgtccacaccaagaacatgcaagaacatatgtgacatgaacatatcttatga 16057555  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || | ||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||   | || ||||    
T  16057556 agataatggttttgactttggatcaacaaatcattaaaggcatctatggtgattaaaagattaatggactttgatagttcttggtatt---tgtgcgttc 16057652  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    |||||||||| || |||||| ||||||||| |||| || |||||||    
T  16057653 ttgagtgattgaccaagacacaaacaaagtttaaagcataccaaga 16057698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 271 - 516
Target Start/End: Original strand, 30650792 - 30651034
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    ||||| |||||||||| |||||||| |||||||||| | | |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||     
T  30650792 gttcataaggttgctcagaaggttcattagagcaaatccataaatcaatgtccacaccaagaacatgcaagaacagatgtgacatgaacatatcttatga 30650891  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || ||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| ||||||||||||   | || ||||    
T  30650892 agacaatgattttgactttggatcaagaaatcattaaaggcatctatggtgattaaaggattaatggactttgatagttcttggtatt---tgtgcgttc 30650988  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    |||||||||| || |||||| ||||||||| |||| || |||||||    
T  30650989 ttgagtgattgaccaagacacaaacaaagtttaaagcataccaaga 30651034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 271 - 540
Target Start/End: Complemental strand, 16212013 - 16211753
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    ||||||||||||||||  ||||||| |||||| ||||| | |||||||||||| ||||||||||||||||||||| ||||| | || ||||||| |||      
T  16212013 gttcagaaggttgctcaaaaggttcattagagaaaacccataaatcaatgtccacaccaagaacatgcaagaacatatgtgacgtgaacatatcttat-- 16211916  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
        || ||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| ||||||| ||||   | || ||||    
T  16211915 ----aatgattttgactttggatcaagaaatcattaaaggcatctatggtgattaaaggattaatggactttgatagttcttgttatt---tgtgcgttc 16211823  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaa 540  Q
    ||||||||||||| |||||| ||||||||| ||||||| |||||||  ||||  ||||||| ||||||||    
T  16211822 ttgagtgattaaccaagacacaaacaaagtttaaatcataccaagatacaagaaatcaaaggacattaaa 16211753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 150 - 516
Target Start/End: Complemental strand, 53947263 - 53946892
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||| |||||||||||||||| ||||||  |||||  ||||||||| ||||||  |||||||||||||||  |||    
T  53947263 acaaccttcataaggttcaaagtgttgaataacatcagaatgttcaacataaaatacaaccgtcaaaaaggaaggaacccagaagaaacattatgatgtt 53947164  T
Q  250 catatgaa-gaactcggaaagagttcagaaggttg------------ctcggaaggttcgttagagcaaacctagaaa-tcaatgtccccaccaagaaca 335  Q
    ||| || | ||| || ||| |||||||||||||||            ||| |||||||| |||||||||||| | ||| ||||||||| |||||||||||    
T  53947163 catctgtatgaaatcagaaggagttcagaaggttgttcagaaggttgctcagaaggttcattagagcaaacccataaaatcaatgtccacaccaagaaca 53947064  T
Q  336 tgcaagaacagatgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaat 435  Q
    |||||||||| ||||| |||| ||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  53947063 tgcaagaacatatgtgacatgaacatatcttatgcagacaatgattttgactttggatcaagaaatcattaaagacatctatggtgattaaaggattaat 53946964  T
Q  436 ggaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    |      ||| ||||||||||||   | || ||| ||||||||||||| |||||| ||| ||||| ||||| | |||||||    
T  53946963 g------gatagttcttggtatt---tgtgcgtttttgagtgattaaccaagacacaaataaagtttaaataataccaaga 53946892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 16212285 - 16212143
Alignment:
Q  2 aacatttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattct 101  Q
    ||||| |||| ||||||| |||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||||| ||||||||||| ||| |    
T  16212285 aacatatccagaaataataaaggattacttcatggataaacaagaatatttaaagtcatcggttgcatgcaatgatgaactagatgcaaagaaatattat 16212186  T
Q  102 tttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  16212185 tttggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 16212143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 16057148 - 16057285
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| |||| || |||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  16057148 atttccagaaatcataaaggattatttcatggataaacaagaatatttaaagtcatctgttacaagcaatattgaactagatgcaaagaaatattctttt 16057247  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaa 142  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16057248 ggacttcaaagaaagaatcatcttgtttgtcaaaacaa 16057285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 53947453 - 53947311
Alignment:
Q  2 aacatttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattct 101  Q
    ||||| |||| ||||||| |||||||||||||||||| ||||| |||||||||||| ||| ||| || ||| |||||||||| ||||||||||| |||||    
T  53947453 aacatatccagaaataataaaggattacttcatggataaacaagaatatttaaagtcatcagttgcatgcagtgatgaactagatgcaaagaaatattct 53947354  T
Q  102 tttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  53947353 tttggacttcaaagaaagaatcatcttgtttgccaaaacaaat 53947311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 41524830 - 41524959
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||| ||||||| |||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||||| ||| ||||||| ||||| |||||    
T  41524830 tccagaaataataaaggattacttcatggataaacaagaatatttaaagtcatcggttgcatgcaatgatgaactagatggaaagaaatattctcttgga 41524929  T
Q  108 cttcaaagaaagaatcatcttgattgtcaa 137  Q
    |||||||||||||||||||||| |||||||    
T  41524930 cttcaaagaaagaatcatcttgtttgtcaa 41524959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 30650489 - 30650610
Alignment:
Q  23 ggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttggacttcaaagaaagaat 122  Q
    |||||| ||||||||| ||||| |||||||||||| ||||||||||||||||  ||||||| ||||| | ||| |||||||| |||||||||||||||||    
T  30650489 ggattatttcatggataaacaagaatatttaaagtcatctgttacaagcaatattgaactagatgcacataaatattctttttgacttcaaagaaagaat 30650588  T
Q  123 catcttgattgtcaaaacaaat 144  Q
    ||||||| ||||||||||||||    
T  30650589 catcttgtttgtcaaaacaaat 30650610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 448 - 537
Target Start/End: Complemental strand, 6406479 - 6406390
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||||  |||| ||||||||| ||||||||||||| ||||| || ||||||| |||||||  ||||  ||||||| |||||    
T  6406479 ttcttggtatttaacttgtgctcttgagtgtttaactaagacaggaacaatgtttaaatcataccaagatacaagaaatcaaaggacatt 6406390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 16252793 - 16252912
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || | |||||||| ||||| || ||||||| ||||||||    
T  16252793 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttaataagacaggaacaatgtttaaatcataccaagaa 16252892  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  16252893 tcaagaaatcaaaggacatt 16252912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 17985553 - 17985434
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || || |||| ||||||||    
T  17985553 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcataccaagaa 17985454  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  17985453 tcaagaaatcaaaggacatt 17985434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 18106195 - 18106076
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  18106195 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 18106096  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  18106095 tcaagaaatcaaaggacatt 18106076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 40921073 - 40921192
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  40921073 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 40921172  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  40921173 tcaagaaatcaaaggacatt 40921192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 52498543 - 52498630
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || |||| || |||||||||||||  ||||||| |||||    
T  52498543 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaaacataccaagaatcaagaaatcaaaggacatt 52498630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 13403671 - 13403584
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || | ||||||||||| |||  |||||||| | |||||||||||  ||||||| |||||    
T  13403671 cttggtatttaacttgtgctcttgagtgttttattaagacagaaataaaagataaatcatatcaagaatcaagaaatcaaaggacatt 13403584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 26330638 - 26330721
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaa 533  Q
    ||||||||||||  |||| ||||| ||| || |||||||||  ||||| || ||||||| |||||||||||||  |||||||||    
T  26330638 cttggtatttaacttgtgatcttgcgtgttttactaagacatgaacaaggtttaaatcataccaagaatcaagaaatcaaagaa 26330721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 30650684 - 30650763
Alignment:
Q  176 gaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatg 255  Q
    ||||||||| |||||||| |||| |||| |||||  | ||||||| ||||||  |||||||||||| || ||||||||||    
T  30650684 gaagaacattagaatgtttagcacaaagtacaaccgtaaaaaaggaaggaacccagaagaaacattctgaagttcatatg 30650763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 860
Target Start/End: Complemental strand, 522807 - 522665
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttc-ttagggaca 818  Q
    ||||||||||||| |||||||  |||| ||  ||||||||||||||||  | | ||||||||| |||   || |||| |||| ||||||| | | | |||    
T  522807 aatcaaaggacataaagacttaagaactcagtcagagttcagaaagttaaaaagagttcagaaggttggacagagttcagaaggttgttcatgatgaaca 522708  T
Q  819 tcaagaa-caagcccataaattcatgaacattatgaagaacat 860  Q
    ||||||| |||||||| ||||||||||||   |||||||||||    
T  522707 tcaagaaccaagcccagaaattcatgaactaaatgaagaacat 522665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 493
Target Start/End: Complemental strand, 17421983 - 17421941
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaa 493  Q
    |||||||||||  |||| |||||||||||||||||||||||||    
T  17421983 ttggtatttaacttgtgctcttgagtgattaactaagacagaa 17421941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Complemental strand, 6406277 - 6406228
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccag 698  Q
    ||||| |||||||||||| |||||| ||| |||||| |||||||||||||    
T  6406277 gaacaatatcaagaacatgcaaggcacacttgacatgaataaatgtccag 6406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 548
Target Start/End: Original strand, 40883896 - 40883993
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatga 548  Q
    |||||||||||| |||||| ||||||| |||||||| |||  |  ||||| || ||||||| || |  ||| | |||||||||||||||||| |||||    
T  40883896 ttggtatttaatttgtgtttttgagtgtttaactaaaacatgattaaagtgtagatcaaactaaaatacaaataatcaaagaacattaaagcctatga 40883993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 170 - 711
Target Start/End: Complemental strand, 19869536 - 19869013
Alignment:
Q  170 aatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatgaa-gaactcggaaa 268  Q
    |||||| || ||||||| ||||||||||| |||  |||||||||||||||||| ||||  ||||||||||||||| |||||||||| | |||| | ||||    
T  19869536 aatgtttaaaaacatcataatgttcagcagaaaatacaactatcaaaaaggcaagaacccagaagaaacattatgaagttcatatgtatgaacccagaaa 19869437  T
Q  269 gagttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatat 368  Q
    ||||||||||||||||| ||||||| ||| | |||||||| | ||||||||| ||  | ||||||||||||||||||  |||| |||| |||||||||||    
T  19869436 gagttcagaaggttgcttggaaggtccgtcatagcaaacccataaatcaatgaccatatcaagaacatgcaagaacatgtgtgtcatgaacatatcatat 19869337  T
Q  369 gcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgt 468  Q
    |||||||| |||||| | |||||||||| |||||||||||  ||| | | |||||| || |||||||||| |||||| |||||||||||||| |||||||    
T  19869336 gcataaaatgatttcaaatttggatcaataaatcattaaaagcatatgtggtgattgaatgattaatggactttgatagttcttggtatttattatgtgt 19869237  T
Q  469 tcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaag 568  Q
    | |||||| |||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||  ||||||||||||     
T  19869236 ttttgagttattaactaagacaggaacaacgtacaaatcaaaccaagaatcaagcgatcaaagaaaattaaagcttatgaacccaatcagagttcagaa- 19869138  T
Q  569 gttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattc 668  Q
                      |||||||||||| | ||||||||||||| || | |||  |||||||||  |||||||| | |||||||||||||||||||||    
T  19869137 ------------------ggttcgaagatactttagaaggttgttcttaaggtttgtcaagaacaagcccataaatgtatgaacattatcaagaacattc 19869056  T
Q  669 aaggctcacatgacataaataaatgtccagaaaagtaccatga 711  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||    
T  19869055 aaggctcacatgatataaataaaagtccagaaaagtactatga 19869013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 266 - 571
Target Start/End: Complemental strand, 13404475 - 13404170
Alignment:
Q  266 aaagagttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatca 365  Q
    ||||||||||||||||| || ||||||| | | | |||||||| | |||||||| | |  |||||||||||||||||| ||||||| |||| ||||||||    
T  13404475 aaagagttcagaaggtttcttggaaggtgcatcatagcaaacccataaatcaatcttcataccaagaacatgcaagaaaagatgtgacatgaacatatca 13404376  T
Q  366 tatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatg 465  Q
    |||||| |||| ||||||  ||||| |||||||||||||||||| ||| ||| ||||||||| |||||||| | |||||| |||||||||||||||| ||    
T  13404375 tatgcagaaaaagatttcagctttgtatcaagaaatcattaaaggcatttatggtgattaaaggattaatgaactttgatagttcttggtatttaatttg 13404276  T
Q  466 tgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcag 565  Q
    ||| ||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  13404275 tgtccttcaatgattaactaagacaggaacaaaatataaatcaaaccaagaatcaagtgatcaatgaacattaaagtttatgaacccagtcagagttcag 13404176  T
Q  566 aaggtt 571  Q
    ||||||    
T  13404175 aaggtt 13404170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 150 - 537
Target Start/End: Original strand, 49332444 - 49332830
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||| |||||||||||||||| ||||||  |||||  ||||||||| ||||||  |||||||||||| ||  |||    
T  49332444 acaaccttcataaggttcaaagtgttgaacaacatcagaatgttcaacataaaatacaaccgtcaaaaaggaaggaacccagaagaaacattctgatgtt 49332543  T
Q  250 catatgaa-gaactcggaaagagttcagaaggttgctcggaaggttcgttagagcaaacctagaaa-tcaatgtccccaccaagaacatgcaagaacaga 347  Q
    |||||| | ||| ||  || ||||||||||||||| || |||||||| |||||||||||| | ||| ||||||||| |||||||||||||||||||||||    
T  49332544 catatgtatgaaatcataaggagttcagaaggttgttcagaaggttcattagagcaaacccataaaatcaatgtccacaccaagaacatgcaagaacaga 49332643  T
Q  348 tgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattg 447  Q
    |||| |||| ||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| || |    
T  49332644 tgtgacatgaacatatcttatgcagacaatgattttgactttggatcaagaaatcattaaagacatctatggtgattaaaggattaatggactttaatag 49332743  T
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    |||||||||||   | || ||| ||||||||||||| |||||| ||||||||| ||||| | |||||||  ||||  ||||||| |||||    
T  49332744 ttcttggtatt---tgtgcgtttttgagtgattaaccaagacacaaacaaagtttaaataataccaagatgcaagaaatcaaaggacatt 49332830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 420 - 691
Target Start/End: Complemental strand, 2653153 - 2652880
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||||||||||| | |||||||   ||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| |||||| ||||||||    
T  2653153 tgattaaaagattaatgaagtttgattaatttcttggtatttaatatgtgtgcttgagtgattaaataagagaggaacaaagtacaaatcagaccaagaa 2653054  T
Q  518 tcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcata 617  Q
    |||||| |||||| ||||||||||||||| || |||| ||||||||| |||||||   |||||| |||| |||||||||||||  |||||||||||||||    
T  2653053 tcaagtaatcaaataacattaaagcttataaacccagtcagagttcaaaaggttagtcaaagtttagaaagttcgaagatagttcagaaggttgttcata 2652954  T
Q  618 tgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaa 691  Q
    || |||| ||||||||||  ||||||||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  2652953 tggtttatcaagaacaaactcataaatatatgaacattatcaagaacattcaaggcttaggtgacataaataaa 2652880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 150 - 516
Target Start/End: Complemental strand, 18063165 - 18062806
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||    |||||||||||| || ||||    
T  18063165 acaaccttcataaggttcaaagtgttgaagaacatcagaatgttcagcacaaagtacaactgtcaaaaaggaaggagaccagaagaaacattttgaagtt 18063066  T
Q  250 catatg-aagaactcggaaagagttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtcccca-ccaagaacatgcaagaacaga 347  Q
    |||||| | |||| | ||  ||||||| |||||| ||  |||||||| |||||||||||| | |||||||||||  || |||||||||||||||||||||    
T  18063065 catatgtatgaacccagatggagttcataaggtttcttagaaggttcattagagcaaacccataaatcaatgtcaacatccaagaacatgcaagaacaga 18062966  T
Q  348 tgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattg 447  Q
    |||| |||| ||||||| |||      || ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||| |    
T  18062965 tgtgacatgaacatatcttat------aatgattttgattttggatcaagaaatcattaaaggcatctatggtgattaaaagattaatgaactttgatag 18062872  T
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    |||||||||||   | || ||||||||||||||||| |||| | ||||||||| |||||||||||||||    
T  18062871 ttcttggtatt---tgtgcgttcttgagtgattaaccaagaaacaaacaaagtttaaatcaaaccaaga 18062806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 271 - 497
Target Start/End: Original strand, 41207732 - 41207961
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaa-cctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatg 369  Q
    |||||||||||||||| |||||||  |||||| ||| || | |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  41207732 gttcagaaggttgctcagaaggtttattagagtaaatccaaaaaatcaatgtccacaccaagaacatgcaagaacagatgtgacatgaacatatcttatg 41207831  T
Q  370 cataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgatt--gttcttggtatttaatatgtg 467  Q
     | | || ||||| |||||||||||||||||||||||||| | ||||| ||||||||| |||||||||| |||||||   || |||||||||||  ||||    
T  41207832 aagacaatgattttgactttggatcaagaaatcattaaaggcgtctatggtgattaaatgattaatggactttgattaatttgttggtatttaacttgtg 41207931  T
Q  468 ttcttgagtgattaactaagacagaaacaa 497  Q
     ||||||||| |||||||||||||||||||    
T  41207932 ctcttgagtggttaactaagacagaaacaa 41207961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 420 - 691
Target Start/End: Original strand, 50940540 - 50940811
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   |||||||| ||||||| ||| ||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  50940540 tgattaaagaattaatggactttgattagtttcttggt-tttaatacgtgctcttgagtgattaactaagacaagaacaatatataaatcaaaccaagaa 50940638  T
Q  518 tcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcata 617  Q
     ||||| |||||| || || |||||||||||| |||| ||||||||||||||||    | |||| | ||||||| |||||||| ||||||||||||| ||    
T  50940639 gcaagtaatcaaaaaatatcaaagcttatgaacccaggcagagttcagaaggttggtcagagttcataaggttc-aagatagtttagaaggttgttctta 50940737  T
Q  618 tgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaa 691  Q
    ||||||| |||||||||  ||| |||||| |||| | |||| | ||||||||||||||||||||||||||||||    
T  50940738 tgatttatcaagaacaagcccaaaaatatatgaagaatatcgataacattcaaggctcacatgacataaataaa 50940811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 49332254 - 49332396
Alignment:
Q  2 aacatttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattct 101  Q
    ||||| |||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||||| ||||||||||| |||||    
T  49332254 aacatatccagaaatagtaaaggattacttcatggataaacaagaatatttaaagtcatcggttgcatgcaatgatgaactatatgcaaagaaatattct 49332353  T
Q  102 tttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  49332354 tttggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 49332396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 13404809 - 13404669
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaag-aaacattcttt 103  Q
    ||||||| ||||||| |||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| || |||| ||| |||||||    
T  13404809 atttccagaaataataaaggattacttcatggatcaacaagaatatttaaagtcatgtgtcacaagcaatgatgaactaagtgtaaagaaaatattcttt 13404710  T
Q  104 tggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||| |||||||  |||||||||||||    
T  13404709 tggacttcaaagaaagaaccatcttgtatgtcaaaacaaat 13404669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 18063349 - 18063215
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||| ||||||| |||||||||||||| ||| ||||| |||||||||||| |||  || || |||||||||||||| ||||||||||| |||||||||||    
T  18063349 tccagaaataataaaggattacttcatagataaacaagaatatttaaagtcatcgattgcatgcaatgatgaactagatgcaaagaaatattcttttgga 18063250  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaa 142  Q
    |||||||||||||||||||||| |||||| |||||    
T  18063249 cttcaaagaaagaatcatcttgtttgtcagaacaa 18063215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 172 - 516
Target Start/End: Complemental strand, 25824383 - 25824035
Alignment:
Q  172 tgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatgaa-gaactcggaaaga 270  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||| |||| | |||||||||||||||| ||||||||   | |||| | ||  ||    
T  25824383 tgttgaagaacatcagaatgttcatcacaaagtacaactatcaaaaaggaaggagcctagaagaaacattatgaagttcatagatatgaacccagatgga 25824284  T
Q  271 gtt------------cagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatgga 358  Q
    |||            ||||||||||||| |||| ||| ||| || || || | |||||||| | | ||| || |||||||||||||| | ||  |||| |    
T  25824283 gtttagaaggttgttcagaaggttgctcagaagattcattaaagaaaccccataaatcaatattcacacaaaaaacatgcaagaacaaacgtcacatgaa 25824184  T
Q  359 catatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatt 458  Q
    |||||| |||      || |||||  |||||||||||| |||||||||||| ||| ||| ||||||||| |||||||||| |||||| |||||| |||||    
T  25824183 catatcttat------aatgattttaactttggatcaataaatcattaaaggcatatatggtgattaaaggattaatggactttgatagttctttgtatt 25824090  T
Q  459 taatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
       | |||||||||||||||||||| |||||| ||||||| | ||||||| |||||||    
T  25824089 ---tgtgtgttcttgagtgattaaccaagacacaaacaaattttaaatcataccaaga 25824035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 603 - 703
Target Start/End: Complemental strand, 13404177 - 13404077
Alignment:
Q  603 agaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaa 702  Q
    |||||||||||| || | |||| |||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13404177 agaaggttgttcttaaggtttatcaagaacaatcctataaatatatgaacattatcaagaacattcaaggctcacatgacataaataaaagtccagaaaa 13404078  T
Q  703 g 703  Q
    |    
T  13404077 g 13404077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 13404623 - 13404512
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| ||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| |||| ||||||||  ||| || ||||    
T  13404623 acaaccttcataaggttcagaatgttgaagaacatcataatgttcaacataaagtacaactgtcaaaaaggcaagaacctagaagaataattctgaagtt 13404524  T
Q  250 catatgaagaac 261  Q
    ||||||||||||    
T  13404523 catatgaagaac 13404512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 420 - 538
Target Start/End: Original strand, 30209564 - 30209684
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    |||||||| |||||||||| |||||||   || || |||||||| |||||||||||||| |||||||||||||  || || |||||||||||||||| ||    
T  30209564 tgattaaaggattaatggattttgattagttttttagtatttaacatgtgttcttgagttattaactaagacacgaaaaacgtataaatcaaaccaaaaa 30209663  T
Q  518 tcaagtgatcaaagaacatta 538  Q
     ||||| ||||||||||||||    
T  30209664 gcaagtaatcaaagaacatta 30209684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 41207420 - 41207550
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| |||| || | |||||| ||||||||| ||||| |||||||||||| |||||||| ||| |||  |||||         ||||| ||||||||    
T  41207420 atttccagaaatcataagggattatttcatggataaacaagaatatttaaagtcatctgttataagaaattttgaac---------agaaatattctttt 41207510  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  41207511 ggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 41207550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 25824593 - 25824458
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatt----taaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttt 103  Q
    |||| ||||||| ||||||||||||||| || ||||| ||||||    |||||| ||  ||| || |||||||||||||| ||| ||||||| ||||||     
T  25824593 tccataaataataaaggattacttcatgcataaacaagaatattaatttaaagtcataagttgcatgcaatgatgaactagatggaaagaaatattctta 25824494  T
Q  104 tggacttcaaagaaagaatcatcttgattgtcaaaa 139  Q
    ||||||||||| |||||||||||||| |||| ||||    
T  25824493 tggacttcaaataaagaatcatcttgtttgttaaaa 25824458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 691
Target Start/End: Original strand, 30210382 - 30210476
Alignment:
Q  597 tagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaa 691  Q
    |||| |||||||||| || |||| |||| ||||||| |  |||||||| | |||||||| |||||||||||||||| |||| |||||||||||||    
T  30210382 tagtctagaaggttgatcttatggtttatcaagaacgagcccataaatgtatgaacattgtcaagaacattcaaggttcacgtgacataaataaa 30210476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 537
Target Start/End: Complemental strand, 1187068 - 1186979
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||||  |||| ||||||||| ||||||||||||||||||| || ||||||| |||||||  ||||  ||||||| |||||    
T  1187068 ttcttggtatttaacttgtgctcttgagtgtttaactaagacagaaacaaggtttaaatcataccaagatacaagaaatcaaaggacatt 1186979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 2115381 - 2115500
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  2115381 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 2115480  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  2115481 tcaagaaatcaaaggacatt 2115500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 41544802 - 41544683
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| |||||||| ||||||| ||||| ||    
T  41544802 tgattaaagaattaatggactttgattaattacttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaagtttaaatcataccaaaaa 41544703  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  41544702 tcaagaaatcaaaggacatt 41544683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 21885694 - 21885813
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    |||||| || ||||||||| |||||||  ||||| |||||||||  |||| ||||||||| || ||| ||||||||||||||| ||||||| | ||||||    
T  21885694 tgattagaaaattaatggactttgattaattctttggtatttaacttgtgctcttgagtgttttacttagacagaaacaaagtttaaatcatagcaagaa 21885793  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  21885794 tcaagaaatcaaaggacatt 21885813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 22406948 - 22406829
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   | ||||||||||||  |||| |||| |||| || |||||||||| ||||| || ||||||| ||||||||    
T  22406948 tgattaaagaattaatggactttgattaactccttggtatttaacttgtgctcttaagtgttttactaagacaggaacaaggtttaaatcataccaagaa 22406849  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  22406848 tcaagaaatcaaaggacatt 22406829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 517
Target Start/End: Original strand, 1968757 - 1968824
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    |||| |||||||  |||| ||||||||| || ||||||||||||||||||| ||||||| ||||||||    
T  1968757 cttgatatttaacttgtgctcttgagtgttttactaagacagaaacaaagtttaaatcataccaagaa 1968824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 16154263 - 16154382
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||  ||||| || || |||| ||||||||    
T  16154263 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacatgaacaaggtttagatcataccaagaa 16154362  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  16154363 tcaagaaatcaaaggacatt 16154382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 21457917 - 21458036
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | || || ||||||||    
T  21457917 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaaccataccaagaa 21458016  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  21458017 tcaagaaatcaaaggacatt 21458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 18097590 - 18097507
Alignment:
Q  454 gtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||  |||||||||||||| || |||||||||| ||||| || ||||| | |||||||  ||||  |||||||||||||    
T  18097590 gtatttaacttgtgttcttgagtgttttactaagacaggaacaaggtttaaataataccaagatacaagaaatcaaagaacatt 18097507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 516
Target Start/End: Original strand, 34822403 - 34822501
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||  ||||||||| |||||||   || |||||||||||  |||| ||||||||| ||||||||||||| ||||| || ||| ||| |||||||    
T  34822403 tgattaaagaattaatggactttgattaatttattggtatttaacttgtgctcttgagtgtttaactaagacaggaacaatgtttaattcataccaaga 34822501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 42033604 - 42033691
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || ||||||| || ||||| || ||||||| ||||| |||||||  ||||||| |||||    
T  42033604 cttggtatttaacttgtgctcttgagtgttttactaagataggaacaaggtttaaatcataccaaaaatcaagaaatcaaaggacatt 42033691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 860
Target Start/End: Complemental strand, 1975294 - 1975152
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttc-ttagggaca 818  Q
    ||||||||||||| |||||||  |||| ||  ||||||||||||||||  | | ||||||||| |||   || |||| |||| ||||||| | | | |||    
T  1975294 aatcaaaggacataaagacttaagaactcagtcagagttcagaaagttaaaaagagttcagaaggttggacagagttcagaaggttgttcatgatgaaca 1975195  T
Q  819 tcaagaa-caagcccataaattcatgaacattatgaagaacat 860  Q
    ||||||| |||||||| ||||||||||||   |||||||||||    
T  1975194 tcaagaaccaagcccagaaattcatgaactaaatgaagaacat 1975152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 860
Target Start/End: Complemental strand, 1982660 - 1982518
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttc-ttagggaca 818  Q
    ||||||||||||| |||||||  |||| ||  ||||||||||||||||  | | ||||||||| |||   || |||| |||| ||||||| | | | |||    
T  1982660 aatcaaaggacataaagacttaagaactcagtcagagttcagaaagttaaaaagagttcagaaggttggacaaagttcagaaggttgttcatgatgaaca 1982561  T
Q  819 tcaagaa-caagcccataaattcatgaacattatgaagaacat 860  Q
    ||||||| |||||||| ||||||||||||   |||||||||||    
T  1982560 tcaagaaccaagcccagaaattcatgaactaaatgaagaacat 1982518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 1982733 - 1982687
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaa 497  Q
    |||||||||||  |||||||||||||| ||||||||||||| |||||    
T  1982733 ttggtatttaacttgtgttcttgagtggttaactaagacaggaacaa 1982687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 1990151 - 1990105
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaa 497  Q
    |||||||||||  |||||||||||||| ||||||||||||| |||||    
T  1990151 ttggtatttaacttgtgttcttgagtggttaactaagacaggaacaa 1990105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 21782108 - 21782174
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| |||||||    
T  21782108 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcagaccaaga 21782174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 742 - 812
Target Start/End: Original strand, 50940667 - 50940737
Alignment:
Q  742 tgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttctta 812  Q
    ||||||||  |||||||||||| ||||| || |||||| || |||||  ||||||||||| ||||||||||    
T  50940667 tgaacccaggcagagttcagaaggttggtcagagttcataaggttcaagatagtttagaaggttgttctta 50940737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 12418247 - 12418316
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgatt-aactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||||||||  |||| ||||||||| || ||||||||||| || ||||||| ||||| |||||||    
T  12418247 ttcttggtatttaacttgtgctcttgagtgttttaactaagacaggaaaaaagtatgaatcataccaaga 12418316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 819 - 860
Target Start/End: Complemental strand, 19869099 - 19869058
Alignment:
Q  819 tcaagaacaagcccataaattcatgaacattatgaagaacat 860  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  19869099 tcaagaacaagcccataaatgtatgaacattatcaagaacat 19869058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 41207620 - 41207701
Alignment:
Q  172 tgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcata 253  Q
    ||||||||||||| |||||||  |||| || | |||||  ||||||||| ||||||  |||||||||||| || ||||||||    
T  41207620 tgttgaagaacattagaatgtctagcacaaggtacaaccgtcaaaaaggaaggaacccagaagaaacattctgaagttcata 41207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 2e-88; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 271 - 705
Target Start/End: Complemental strand, 15989499 - 15989078
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    |||||||||||||||  |||||||| |||||||||||| | |||||||||||| |||||||||||          |||||| |||| ||||||| |||||    
T  15989499 gttcagaaggttgcttagaaggttcattagagcaaacccataaatcaatgtccacaccaagaaca----------gatgtgacatgaacatatcttatgc 15989410  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | |||| ||||| |||||||||||||||||||||||||| ||||||| || |||||| |||||||||| |||||| |||||||||||||    || | ||    
T  15989409 agaaaatgattttgactttggatcaagaaatcattaaaggcatctatggtaattaaaggattaatggactttgatagttcttggtatttg---tgcgctc 15989313  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggt 570  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| ||||||    
T  15989312 ttgagtgattaaccaagacacaaacaaaatataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaactcagtcagagttcggaaggt 15989213  T
Q  571 tacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaa 670  Q
    ||   | |||| |||||||| |||||||||  |||| ||||||| || | |||| |||||||||   || |||||| |||||||||| || |||||||||    
T  15989212 tagtcagagttcagaaggtttgaagatagttcagaaagttgttcttaaggtttatcaagaacaagctcagaaatatatgaacattataaaaaacattcaa 15989113  T
Q  671 ggctcacatgacataaataaatgtccagaaaagta 705  Q
    || | || |||| |||||||| | |||| ||||||    
T  15989112 ggtttacgtgacttaaataaaagcccagtaaagta 15989078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 170 - 571
Target Start/End: Complemental strand, 17220549 - 17220153
Alignment:
Q  170 aatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatgaagaactcggaaag 269  Q
    |||||| |||||||||| |||||||| |||| || |||| ||||||||||  |||| || || ||||||||| || |||| ||||| ||||| |  ||||    
T  17220549 aatgtttaagaacatcaaaatgttcaacatacagcacaattatcaaaaagaaaggatctcagtagaaacattctgaagtttatatggagaacccataaag 17220450  T
Q  270 agttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgc-aagaacagatgtggcatggacatatcatat 368  Q
    |||| ||||||||| | ||||||||| | |||||||| |  |||||||||||           |||||| |||||||||  || |||| |||||||||||    
T  17220449 agtttagaaggttgtttggaaggttcctcagagcaaatcctgaaatcaatgt-----------acatgccaagaacagacatgccatgtacatatcatat 17220361  T
Q  369 gcataaaaggatttcgactttggatcaagaaatcattaaag--acatctattgtgattaaaagattaatggaatttgattgtt-cttggtatttaatatg 465  Q
    ||| |||| ||||||||| | ||||||||||||||| ||||  ||| |||| ||||||||| |||||||  | |||| | ||| ||||||||||||||||    
T  17220360 gcagaaaatgatttcgacatgggatcaagaaatcataaaaggcacacctatggtgattaaaggattaataaactttggtagtttcttggtatttaatatg 17220261  T
Q  466 tgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaag--aacattaaagcttatgaaaccagacagagttc 563  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||  |||||||||||||||||| |||  ||||||||    
T  17220260 tgttcttgagtgattaactaagacatgaacaaagtataaattaaaccaagaatcaagtgataaaagaaaacattaaagcttatgaacccaatcagagttc 17220161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 271 - 516
Target Start/End: Original strand, 9006138 - 9006380
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    |||||||||||||||  |||||||  | |||||||||| | |||||||||||| ||| |||||||| |||||||||||||| |||| ||||||| | |||    
T  9006138 gttcagaaggttgctgagaaggtttatcagagcaaacccataaatcaatgtccacacgaagaacatacaagaacagatgtgtcatgaacatatcttgtgc 9006237  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | |||| ||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||| | ||||||  |||||||||||   | || ||||    
T  9006238 agaaaatgattttgactttggatcaagaaatcattaaagacatctatggtgagtaaaggattaatgcactttgatatttcttggtatt---tttgcgttc 9006334  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||||||| |||||| |||||||||  |||||| |||||||    
T  9006335 ttgagtgattaacgaagacaaaaacaaagttcaaatcataccaaga 9006380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 12697248 - 12697112
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||||||||||| ||| |||||||||| ||| ||||| | |||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||    
T  12697248 tccaaaaataataaagtattacttcatcgataaacaagactatttaaagtcatctgttacaagcaatgatgaactagatacaaagaaatattcttttgga 12697149  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12697148 cttcaaagaaagaatcatcttgtttggcaaaacaaat 12697112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 12630085 - 12629946
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||||||||||| ||  |||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| |||||||||||||| |||| |||    
T  12630085 atttccaaaaataataaaaaattatttcatggatcaacaagaatatttaaagtcatttgttacaagcaatgatgaattaaatgcaaagaaatattcattt 12629986  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    || ||||| |||||||||||||||  ||||||||||||||    
T  12629985 gggcttcagagaaagaatcatcttctttgtcaaaacaaat 12629946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 17220771 - 17220633
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| ||||||| |||||||||||||||||||||||| |||||| ||| | || |||||||| ||||| |||||||||| |||||||| ||||||||    
T  17220771 atttccagaaataataaaggattacttcatggatcaacaagaatattaaaattcatttgttacaaacaatggtgaactaaat-caaagaaatattctttt 17220673  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
     |||||||||||||||||||| ||| ||||||||||||||    
T  17220672 agacttcaaagaaagaatcattttgtttgtcaaaacaaat 17220633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 12561177 - 12561276
Alignment:
Q  45 aaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||||||||||| | ||| ||| || |||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||||||    
T  12561177 aaatatttaaaatcatcggttgcatgcaatgatgaactagatgcaaagaaatattcttctggacttcaaagaaagaatcatcttgtttgtcagaacaaat 12561276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 15989814 - 15989700
Alignment:
Q  21 aaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttggacttcaaagaaaga 120  Q
    |||||| ||||||||||| ||||| |||||||||||| |||  || ||||||||||||         |||| ||| |||||||||||| |||||||||||    
T  15989814 aaggatcacttcatggataaacaagaatatttaaagtcatcaattgcaagcaatgatg---------caaataaatattcttttggacatcaaagaaaga 15989724  T
Q  121 atcatcttgattgtcaaaacaaat 144  Q
    ||||||||| ||||||||||||||    
T  15989723 atcatcttgtttgtcaaaacaaat 15989700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 717 - 779
Target Start/End: Original strand, 40701426 - 40701488
Alignment:
Q  717 agcaatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttca 779  Q
    ||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||    
T  40701426 agcaatcaaaggacattaagaattttgaacttaatcagagttcagaaagttggacatagttca 40701488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 32108197 - 32108316
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||||||||| || ||||||| ||||||||    
T  32108197 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacagaaacaaggtttaaatcataccaagaa 32108296  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  32108297 tcaagaaatcaaaggacatt 32108316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 12561346 - 12561429
Alignment:
Q  172 tgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatg 255  Q
    |||| |||||||||||||||||||||| |||| |||||  ||||||||| |||| | ||||||||||||| || ||||||||||    
T  12561346 tgttaaagaacatcagaatgttcagcacaaagtacaaccgtcaaaaaggaaggagcctagaagaaacattttgaagttcatatg 12561429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 9546205 - 9546086
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  9546205 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 9546106  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  9546105 tcaagaaatcaaaggacatt 9546086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 32097760 - 32097879
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  32097760 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 32097859  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  32097860 tcaagaaatcaaaggacatt 32097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 9005754 - 9005868
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| ||||| | |||||| |||||||| || ||||| |||||||||||| ||| |||||||| ||||         ||||||| ||| ||||||||    
T  9005754 atttccagaaatactaaaggataacttcatgcataaacaagaatatttaaagtcatcggttacaagaaatg---------atgcaaataaatattctttt 9005844  T
Q  105 ggacttcaaagaaagaatcatctt 128  Q
    |||||||||||||| |||||||||    
T  9005845 ggacttcaaagaaataatcatctt 9005868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 9535922 - 9535803
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  ||||| |||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  9535922 tgattaaagaattaatggactttgattaattctttggtatttaacttgtgctcttgagtgttttactaagacaggaacaatgtttaaatcataccaagaa 9535823  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  9535822 tcaagaaatcaaaggacatt 9535803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 22964934 - 22964815
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    |||||| || ||||||||| |||||||  ||||| |||||||||  |||| ||||||||| || ||| ||||||||||||||| ||||||| | ||||||    
T  22964934 tgattagaaaattaatggactttgattaattctttggtatttaacttgtgctcttgagtgttttacttagacagaaacaaagtttaaatcatagcaagaa 22964835  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  22964834 tcaagaaatcaaaggacatt 22964815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 42620560 - 42620679
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  ||||| |||||||||| |||| |||| |||| || |||||||||| ||||| || ||||||| ||||||||    
T  42620560 tgattaaagaattaatggactttgattaattctttggtatttaatctgtgctcttaagtgttttactaagacaggaacaaggtttaaatcataccaagaa 42620659  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  42620660 tcaagaaatcaaaggacatt 42620679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 46496272 - 46496391
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  46496272 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 46496371  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  46496372 tcaagaaatcaaaggacatt 46496391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 46506884 - 46507003
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  46506884 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 46506983  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  46506984 tcaagaaatcaaaggacatt 46507003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 9005943 - 9006049
Alignment:
Q  178 agaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatg-aagaactcggaaagagttcag 276  Q
    |||| ||||||||||||||||||||| |||||   | |||||| ||||||  |||||||||||| || |||||||||| | |||| | ||| || |||||    
T  9005943 agaatatcagaatgttcagcataaagtacaaccgcctaaaaggaaggaacccagaagaaacattttgaagttcatatgtatgaacccagaaggatttcag 9006042  T
Q  277 aaggttg 283  Q
    |||||||    
T  9006043 aaggttg 9006049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 706
Target Start/End: Original strand, 9006519 - 9006576
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||||||||||||| |||||  |||||||||| ||||||||||||  |||||||    
T  9006519 gaacattatcaagaacatgcaaggtacacatgacatgaataaatgtccattaaagtac 9006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 14114754 - 14114666
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||| |||||||   ||||||||||||||  |||| ||||||||| ||||||||||||| | |||||| ||| ||| |||||||    
T  14114754 attaatggactttgattaatttcttggtatttaacttgtgctcttgagtgtttaactaagacaggagcaaagtttaagtcataccaaga 14114666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 14424404 - 14424316
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||| |||||||   ||||||||||||||  |||| ||||||||| ||||||||||||| | |||||| ||| ||| |||||||    
T  14424404 attaatggactttgattaatttcttggtatttaacttgtgctcttgagtgtttaactaagacaggagcaaagtttaagtcataccaaga 14424316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 430 - 590
Target Start/End: Complemental strand, 5616181 - 5616019
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaa-accaagaatcaagtgat 526  Q
    |||||||||||||||||   || |||||||||||  |||| ||||||||| ||||||||||||| ||| |||||||||| || |||||||  |||   ||    
T  5616181 attaatggaatttgattaatttgttggtatttaacttgtgctcttgagtggttaactaagacaggaac-aagtataaattaataccaagatacaaagaat 5616083  T
Q  527 caaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggtt 590  Q
    ||||| |||| ||| |||| |||   || |||||||||||| |||| | | |||| ||||||||    
T  5616082 caaaggacataaaaacttaagaactaagtcagagttcagaaagttaaaaagagttcagaaggtt 5616019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 16132743 - 16132624
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || | |||||||| ||||| || | ||||| ||||||||    
T  16132743 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttattaagacaggaacaaggtttgaatcataccaagaa 16132644  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  16132643 tcaagaaatcaaaggacatt 16132624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 16143307 - 16143188
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || | |||||||| ||||| || | ||||| ||||||||    
T  16143307 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttattaagacaggaacaaggtttgaatcataccaagaa 16143208  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  16143207 tcaagaaatcaaaggacatt 16143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 860
Target Start/End: Original strand, 31824201 - 31824343
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttctt-agggaca 818  Q
    ||||||||||||| |||||||  ||||  |  ||||||||||||||||  | | ||||||||| |||   || |||| |||| ||||||| | | | |||    
T  31824201 aatcaaaggacataaagacttaagaacttagtcagagttcagaaagttaaaaagagttcagaaggttggacagagttcagaaggttgttcatgatgaaca 31824300  T
Q  819 tcaagaac-aagcccataaattcatgaacattatgaagaacat 860  Q
    |||||||| ||||||||||||||||||||   |||||||||||    
T  31824301 tcaagaaccaagcccataaattcatgaactaaatgaagaacat 31824343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 706
Target Start/End: Original strand, 33090796 - 33090854
Alignment:
Q  648 tgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||| |||| ||||||  |||||||| ||||||||||||| | ||||||||||||    
T  33090796 tgaacattgtcaaaaacatttgaggctcacgtgacataaataaaagcccagaaaagtac 33090854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 13286448 - 13286399
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaa 497  Q
    ||||||||||||||  |||| ||||||||| ||||||||||||| |||||    
T  13286448 ttcttggtatttaacttgtgctcttgagtggttaactaagacaggaacaa 13286399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 338 - 725
Target Start/End: Complemental strand, 4304 - 3920
Alignment:
Q  338 caagaacagatgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatgg 437  Q
    |||||| ||||||| |||| ||||||| |||||| |||| ||||| |||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||     
T  4304 caagaatagatgtgacatgaacatatcttatgcagaaaatgattttgactttggataaagaaatcattaaaggcatctatggtgattaaaggattaatgt 4205  T
Q  438 aatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    | |||||| |||||||||||||    ||  |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4204 actttgatagttcttggtatttg---tgcattcttgtgtgattaaccaagacacaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 4108  T
Q  538 aaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaac 637  Q
    ||||||||||||  ||| |||||||| ||||||||   | |||| |||||||||||| |||||  |||| |||||||  | | |||| |||||||||       
T  4107 aaagcttatgaactcagtcagagttctgaaggttagtaagagttcagaaggttcgaaaatagttcagaaagttgttctaaaggtttatcaagaacaagcg 4008  T
Q  638 cataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgacttagagcaatcaa 725  Q
    || |||||| ||||||||||||||||||||||||| |||| |||| |||||||| |  ||| |||||||  ||||| ||| |||||||    
T  4007 cagaaatatatgaacattatcaagaacattcaaggttcacgtgacttaaataaaagctcagtaaagtacattgactaagatcaatcaa 3920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 4697 - 4561
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||||||||||| ||| |||||||||| ||| ||||| | |||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||    
T  4697 tccaaaaataataaagtattacttcatcgataaacaagactatttaaagtcatctgttacaagcaatgatgaactagatacaaagaaatattcttttgga 4598  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||| | | ||||||||||    
T  4597 cttcaaagaaagaatcatcttgttggacaaaacaaat 4561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 4468 - 4390
Alignment:
Q  177 aagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagttcatatg 255  Q
    ||||||||||||||||||| ||||||| |||||  ||||||||| ||||||  |||||||||||| || ||||||||||    
T  4468 aagaacatcagaatgttcaacataaagtacaaccgtcaaaaaggaaggaacccagaagaaacattctgaagttcatatg 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 157; Significance: 5e-83; HSPs: 2)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 181 - 616
Target Start/End: Complemental strand, 1843 - 1419
Alignment:
Q  181 acatcagaatgttcagcataaagaacaacta-tcaaaaaggcaggaacttagaagaaacattatgcagttcatatgaa-gaactcggaaagagttcagaa 278  Q
    ||||||||||||||| ||||||| ||||  | ||| ||||  ||||||  |||||||||||| || |||||||||| | |||| || || ||||||||||    
T  1843 acatcagaatgttcaccataaagtacaaacagtcagaaagaaaggaacccagaagaaacattctgaagttcatatgtatgaacccgaaaggagttcagaa 1744  T
Q  279 ggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgcataaaagg 378  Q
    |||||||| |||||||| ||| |||||||| | |||||||||||| |||||||||||          |||||| |||| ||||||| | |||| ||||||    
T  1743 ggttgctcagaaggttccttatagcaaacccataaatcaatgtccacaccaagaaca----------gatgtgacatgaacatatcttttgcagaaaagg 1654  T
Q  379 atttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttcttgagtga 478  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||  |||||| |||||    | ||||||| |||||    
T  1653 atttcgattttggatcaagaaatcattaaaggcatctatggtgattaaaggattaatggactttgatatttcttgttatttg---tatgttctttagtga 1557  T
Q  479 ttaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaa 578  Q
    ||||| | || | ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||  ||| |||||||||||||||||  || |    
T  1556 ttaaccaggagataaacaaagtataaatcaaaccaagattcaagtgatcaaggaacattaaaacttatgaactcagtcagagttcagaaggttagttaga 1457  T
Q  579 gttaagaaggttcgaagatagtgtagaaggttgttcat 616  Q
    ||| ||||||||||||||||||  |||||||| |||||    
T  1456 gttcagaaggttcgaagatagttcagaaggtttttcat 1419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 1999 - 1940
Alignment:
Q  85 atgcaaagaaacattcttttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  1999 atgcaaagaaatatttttttggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 1940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1468 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: scaffold1468
Description:

Target: scaffold1468; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 150 - 537
Target Start/End: Original strand, 425 - 811
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||| |||||||||||||||| ||||||  |||||  ||||||||| ||||||  |||||||||||| ||  |||    
T  425 acaaccttcataaggttcaaagtgttgaacaacatcagaatgttcaacataaaatacaaccgtcaaaaaggaaggaacccagaagaaacattctgatgtt 524  T
Q  250 catatgaa-gaactcggaaagagttcagaaggttgctcggaaggttcgttagagcaaacctagaaa-tcaatgtccccaccaagaacatgcaagaacaga 347  Q
    |||||| | ||| ||  || ||||||||||||||| || |||||||| |||||||||||| | ||| ||||||||| |||||||||||||||||||||||    
T  525 catatgtatgaaatcataaggagttcagaaggttgttcagaaggttcattagagcaaacccataaaatcaatgtccacaccaagaacatgcaagaacaga 624  T
Q  348 tgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattg 447  Q
    |||| |||| ||||||| |||||| | || ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||| || |    
T  625 tgtgacatgaacatatcttatgcagacaatgattttgactttggatcaagaaatcattaaagacatctatggtgattaaaggattaatggactttaatag 724  T
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    |||||||||||   | || ||| ||||||||||||| |||||| ||||||||| ||||| | |||||||  ||||  ||||||| |||||    
T  725 ttcttggtatt---tgtgcgtttttgagtgattaaccaagacacaaacaaagtttaaataataccaagatgcaagaaatcaaaggacatt 811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1468; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 235 - 377
Alignment:
Q  2 aacatttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattct 101  Q
    ||||| |||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||||| ||||||||||| |||||    
T  235 aacatatccagaaatagtaaaggattacttcatggataaacaagaatatttaaagtcatcggttgcatgcaatgatgaactatatgcaaagaaatattct 334  T
Q  102 tttggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  335 tttggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 413 - 714
Target Start/End: Complemental strand, 5687 - 5387
Alignment:
Q  413 tctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaacc 512  Q
    ||||| || |||||| |||||||||| |||||| ||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  5687 tctatggtaattaaatgattaatggactttgat-gttcttggtatttaacatatgttcttaagtgattaactaagacaggaacaaagtataaatcaaacc 5589  T
Q  513 aagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgt 612  Q
    |||| |||| ||||||||||||||||||||||||||| | |   | ||||||||||||||  || |||| |||||||||||||||| |  ||||||||||    
T  5588 aagattcaactgatcaaagaacattaaagcttatgaacctaataatagttcagaaggttagttagagtttagaaggttcgaagatatttcagaaggttgt 5489  T
Q  613 tcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgac 712  Q
    ||  | | |||| |||||| ||  |||||||||  | ||||||||||||||||| ||||||||||||| ||||||  || || || |||||||| |||||    
T  5488 tctaaaggtttatcaagaataagcccataaataaattaacattatcaagaacatacaaggctcacatggcataaaagaaagtgcataaaagtactatgac 5389  T
Q  713 tt 714  Q
    ||    
T  5388 tt 5387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 499 - 714
Target Start/End: Complemental strand, 2975 - 2760
Alignment:
Q  499 gtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagata 598  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||   | ||||||||||||||  || |||| ||||||||||||||||    
T  2975 gtataaatcaaaccaagattcaagtgatcaaagaacattaaagcttatgaacccaataatagttcagaaggttagttagagtttagaaggttcgaagata 2876  T
Q  599 gtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccag 698  Q
     |  ||||||||||||  | | |||| |||||| ||  |||||||||  | ||||||||||||||||| ||||||||||||| ||||||  || || ||     
T  2875 tttcagaaggttgttctaaaggtttatcaagaataagcccataaataaattaacattatcaagaacatacaaggctcacatggcataaaagaaagtgcat 2776  T
Q  699 aaaagtaccatgactt 714  Q
    |||||||| |||||||    
T  2775 aaaagtactatgactt 2760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 2e-64; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 413 - 714
Target Start/End: Original strand, 26139769 - 26140069
Alignment:
Q  413 tctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaacc 512  Q
    ||||| || |||||| |||||||||| |||||| ||||||||||||||| || ||||||| |||||||||| || |||| ||||||||||||||||||||    
T  26139769 tctatggtaattaaatgattaatggactttgat-gttcttggtatttaacatatgttcttaagtgattaaccaaaacaggaacaaagtataaatcaaacc 26139867  T
Q  513 aagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgt 612  Q
    |||| |||||||||||||||||||||||||||||||| |||   | ||||||||||||||  || |||| |||||||||||||||| |  ||||||||||    
T  26139868 aagattcaagtgatcaaagaacattaaagcttatgaacccaataatagttcagaaggttagttagagtttagaaggttcgaagatatttcagaaggttgt 26139967  T
Q  613 tcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgac 712  Q
    ||  | | |||| |||||| ||  |||||||||  | ||||||||||||||||| ||||||||||||| ||||||  || || || |||||||| |||||    
T  26139968 tctaaaggtttatcaagaataagcccataaataaattaacattatcaagaacatacaaggctcacatggcataaaagaaagtgcataaaagtactatgac 26140067  T
Q  713 tt 714  Q
    ||    
T  26140068 tt 26140069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 413 - 687
Target Start/End: Original strand, 26019065 - 26019338
Alignment:
Q  413 tctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaacc 512  Q
    ||||| || |||||| |||||||||| |||||| ||||||||||||||| || ||||||| ||||||||||| |||||  ||||| ||||||||||||||    
T  26019065 tctatggtaattaaatgattaatggactttgat-gttcttggtatttaacatatgttcttaagtgattaactcagacatgaacaaggtataaatcaaacc 26019163  T
Q  513 aagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgt 612  Q
    |||| |||||||||||||||||||||||||||||||| |||   | ||||||||||||||  || |||| |||||||||||||||| |  ||||||||||    
T  26019164 aagattcaagtgatcaaagaacattaaagcttatgaacccaataatagttcagaaggttagttagagtttagaaggttcgaagatatttcagaaggttgt 26019263  T
Q  613 tcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaa 687  Q
    ||  | | |||| |||||| ||  |||||||||  |  |||||||||||||||| ||||||||||||| ||||||    
T  26019264 tctaaaggtttatcaagaataagcccataaataaatttacattatcaagaacatacaaggctcacatgtcataaa 26019338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 150 - 506
Target Start/End: Complemental strand, 792202 - 791841
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||||||||||||||||||||||| |||| |||||  | ||||||| |||| | ||||||||||||| ||  |||    
T  792202 acaaccttcataaggttcaaagtgttgaagaacatcagaatgttcagcacaaagtacaaccgtaaaaaaggaaggagcctagaagaaacattttgaggtt 792103  T
Q  250 catatgaa-gaactcggaaagagttcagaaggttg------------ctcggaaggttcgtta-gagcaaacctagaaatcaatgtccccaccaagaaca 335  Q
    |||||| | |||| | ||  |||||||||||||||            ||| |||||||| ||| ||||||||| |  ||||||||||| |||||||||||    
T  792102 catatgtatgaacccagatggagttcagaaggttgtttagaaggttgctcagaaggttcattaagagcaaacccatgaatcaatgtccacaccaagaaca 792003  T
Q  336 tgcaagaacagatgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaat 435  Q
    |||| ||||||||||| | || ||||||| |||      || ||||| |||||||||| ||||||||||||||| ||||||| ||||||||| |||||||    
T  792002 tgcatgaacagatgtgacgtgaacatatcttat------aatgattttgactttggataaagaaatcattaaaggcatctatggtgattaaaggattaat 791909  T
Q  436 ggaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaat 506  Q
    ||| |||||| ||||||||||||   | || ||||||||||||||||| |||||| |||||| || |||||    
T  791908 ggactttgatagttcttggtatt---tgtgcgttcttgagtgattaaccaagacacaaacaaggtttaaat 791841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 792386 - 792250
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||| ||||||| |||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||||| ||| ||||||| |||||||||||    
T  792386 tccagaaataataaaggattacttcatggataaacaagaatatttaaagtcatcggttgcatgcaatgatgaactagatggaaagaaatattcttttgga 792287  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||| ||||||||||||||    
T  792286 cttcaaagaaagaatcatcttgtttgtcaaaacaaat 792250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 271 - 500
Target Start/End: Complemental strand, 22224431 - 22224205
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    |||||||||| |||||  ||||||| ||||||||||   | |||||||||||| |||||||||||| ||||||||||| || |||| ||||||| ||||     
T  22224431 gttcagaaggctgctcaaaaggttcattagagcaaatgcataaatcaatgtccacaccaagaacattcaagaacagatatgacatgaacatatcttatga 22224332  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || ||||| ||||||||||||| ||||||| | || ||||| | ||||||||| |||||||||| |||||| ||||||||||||   | || ||||    
T  22224331 agacaatgattttgactttggatcaataaatcatcataggcatctctggtgattaaaggattaatggactttgatagttcttggtatt---tgtgcgttc 22224235  T
Q  471 ttgagtgattaactaagacagaaacaaagt 500  Q
    |||||||||| || |||||| |||||||||    
T  22224234 ttgagtgattgaccaagacacaaacaaagt 22224205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 271 - 500
Target Start/End: Complemental strand, 22250266 - 22250040
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    |||||||||| |||||  ||||||| ||||||||||   | |||||||||||| |||||||||||| ||||||||||| || |||| ||||||| ||||     
T  22250266 gttcagaaggctgctcaaaaggttcattagagcaaatgcataaatcaatgtccacaccaagaacattcaagaacagatatgacatgaacatatcttatga 22250167  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || ||||| ||||||||||||| ||||||| | || ||||| | ||||||||| |||||||||| |||||| ||||||||||||   | || ||||    
T  22250166 agacaatgattttgactttggatcaataaatcatcataggcatctctggtgattaaaggattaatggactttgatagttcttggtatt---tgtgcgttc 22250070  T
Q  471 ttgagtgattaactaagacagaaacaaagt 500  Q
    |||||||||| || |||||| |||||||||    
T  22250069 ttgagtgattgaccaagacacaaacaaagt 22250040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 420 - 549
Target Start/End: Complemental strand, 9762159 - 9762028
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||||||||||||| |||||||   || |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  9762159 tgattaaaagattaatggactttgattagtttattggtatttaatatgtgttcttgattgattaactaagacagaaacatagtataaatcaaaccaagaa 9762060  T
Q  518 tcaagtgatcaaagaacattaaagcttatgaa 549  Q
     ||||  |||||||||||||||  ||||||||    
T  9762059 gcaagcaatcaaagaacattaagacttatgaa 9762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 10841339 - 10841470
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||||||||||| |||||||||||||| | ||||||| ||||||||||        |||||| |||||||||||||||| |||||||| ||| ||||    
T  10841339 atttccaaaaataataaaggattacttcattggtcaacaagaatatttaaa--------ttacaaacaatgatgaactaaattcaaagaaatattatttt 10841430  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
     |||||||||||||||| ||||||  ||||||||| ||||    
T  10841431 agacttcaaagaaagaaacatcttatttgtcaaaataaat 10841470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 22224700 - 22224586
Alignment:
Q  21 aaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttggacttcaaagaaaga 120  Q
    |||||||| ||||||||| ||||| |||||||||||| |||| |||||||||||   ||||         ||||| ||||||||||||||||||||||||    
T  22224700 aaggattatttcatggataaacaagaatatttaaagtcatctattacaagcaatatagaac---------agaaatattcttttggacttcaaagaaaga 22224610  T
Q  121 atcatcttgattgtcaaaacaaat 144  Q
    ||||||||| ||||||||||||||    
T  22224609 atcatcttgtttgtcaaaacaaat 22224586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 22250535 - 22250421
Alignment:
Q  21 aaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttggacttcaaagaaaga 120  Q
    |||||||| ||||||||| ||||| |||||||||||| |||| |||||||||||   ||||         ||||| ||||||||||||||||||||||||    
T  22250535 aaggattatttcatggataaacaagaatatttaaagtcatctattacaagcaatatagaac---------agaaatattcttttggacttcaaagaaaga 22250445  T
Q  121 atcatcttgattgtcaaaacaaat 144  Q
    ||||||||| ||||||||||||||    
T  22250444 atcatcttgtttgtcaaaacaaat 22250421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 578 - 714
Target Start/End: Original strand, 25508335 - 25508471
Alignment:
Q  578 agttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcac 677  Q
    |||| |||||||||||||||| |  ||||||||||||  | | |||| |||||| ||  |||||||||  | ||||||||||||||||| ||||||||||    
T  25508335 agttcagaaggttcgaagatatttcagaaggttgttctaaaggtttatcaagaataagcccataaataaattaacattatcaagaacatacaaggctcac 25508434  T
Q  678 atgacataaataaatgtccagaaaagtaccatgactt 714  Q
    ||| ||||||  || || || |||||||| |||||||    
T  25508435 atggcataaaagaaagtgcataaaagtactatgactt 25508471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 555 - 725
Target Start/End: Complemental strand, 9762003 - 9761835
Alignment:
Q  555 acagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacat 654  Q
    |||||||||| ||||||  | | |||| ||||||||| ||||||||  | |||||||||| ||| | ||| ||| | |||  ||| |||||| || ||||    
T  9762003 acagagttcaaaaggttggacatagttcagaaggttc-aagatagttcaaaaggttgttcttat-agttatcaatatcaagcccagaaatatatggacat 9761906  T
Q  655 tatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgacttagagcaatcaa 725  Q
    ||| ||||||||||||||||||| ||||||||||||| ||||| |||| ||  || ||||||| |||||||    
T  9761905 tataaagaacattcaaggctcacgtgacataaataaaagtccaaaaaattattataacttagatcaatcaa 9761835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 24922681 - 24922562
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  24922681 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 24922582  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  24922581 tcaagaaatcaaaggacatt 24922562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 24931717 - 24931598
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  24931717 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 24931618  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  24931617 tcaagaaatcaaaggacatt 24931598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 26018953 - 26019061
Alignment:
Q  275 agaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgcataa 374  Q
    ||||||||| || |||| ||| | ||| |||||| | |||||||||| |  |||||||||||||||||||| | |||  ||| |||||||||||||| ||    
T  26018953 agaaggttgttcagaagtttcatcagaacaaacccataaatcaatgtgcataccaagaacatgcaagaacatacgtgatatgaacatatcatatgcagaa 26019052  T
Q  375 aaggatttc 383  Q
    |||||||||    
T  26019053 aaggatttc 26019061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 29539870 - 29539957
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| |  |||||||||| |||||||| ||||||| |||||||||||||  ||||||| |||||    
T  29539870 cttggtatttaacttgtgctcttgagtgttatactaagacaggaacaaagtttaaatcataccaagaatcaagaaatcaaaggacatt 29539957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 12454342 - 12454461
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  12454342 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 12454441  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  12454442 tcaagaaatcaaaggacatt 12454461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 18159107 - 18159226
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  18159107 tgattaaagaattaatggactttgattaattacttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 18159206  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  18159207 tcaagaaatcaaaggacatt 18159226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 20911681 - 20911800
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || || |||| ||||||||    
T  20911681 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcataccaagaa 20911780  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  20911781 tcaagaaatcaaaggacatt 20911800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 20926129 - 20926248
Alignment:
Q  420 tgattaaaagattaatggaatttgattgttc--ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  |||||||||||||||||  |   |||||||||||  |||| ||||||||| || |||||||||| ||||| || || |||| ||||||||    
T  20926129 tgattaaagaattaatggaatttgattaatacattggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcataccaagaa 20926228  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  20926229 tcaagaaatcaaaggacatt 20926248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 26425934 - 26426053
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  26425934 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 26426033  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  26426034 tcaagaaatcaaaggacatt 26426053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 27788247 - 27788128
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   ||||||||||||||  |||| ||||||||| ||||||||||||  ||||| || ||||||| |||||||     
T  27788247 tgattaaagaattaatggattttgattaatttcttggtatttaacttgtgctcttgagtgtttaactaagacatgaacaatgtttaaatcataccaagat 27788148  T
Q  518 tcaagtgatcaaagaacatt 537  Q
     ||||  ||||||| |||||    
T  27788147 acaagaaatcaaaggacatt 27788128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 860
Target Start/End: Complemental strand, 9762004 - 9761894
Alignment:
Q  750 aacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttcttagggacatcaagaacaagcccataaattcatgaacatt 849  Q
    ||||||||||| || |||||||||||||||||| |||||  |||||| | || ||||||||||  |  ||||| | |||||||| ||||  ||| |||||    
T  9762004 aacagagttcaaaaggttggacatagttcagaaggttcaagatagttcaaaaggttgttcttatagttatcaatatcaagcccagaaatatatggacatt 9761905  T
Q  850 atgaagaacat 860  Q
    || ||||||||    
T  9761904 ataaagaacat 9761894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 450 - 520
Target Start/End: Original strand, 18200684 - 18200754
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatca 520  Q
    ||||||||||||  |||||| ||||||| || |||||||||| ||||| || ||||||| |||||||||||    
T  18200684 cttggtatttaacttgtgttattgagtgttttactaagacaggaacaaggtttaaatcataccaagaatca 18200754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 706
Target Start/End: Complemental strand, 27788015 - 27787958
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||||||||| ||| |||||| |||||||||| ||||||||| ||| |||||||    
T  27788015 gaacattatcaagagcatgcaaggcacacatgacatgaataaatgttcaggaaagtac 27787958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 14790983 - 14791102
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || || ||||  |||||||    
T  14790983 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcatgccaagaa 14791082  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  14791083 tcaagaaatcaaaggacatt 14791102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 23777849 - 23777968
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| |||||  | | ||||| ||||||||    
T  23777849 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaagttttgaatcataccaagaa 23777948  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  23777949 tcaagaaatcaaaggacatt 23777968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 30658808 - 30658761
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaa 497  Q
    ||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  30658808 cttggtatttaatttgtgctcttgagtgttttactaagacagaaacaa 30658761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 531
Target Start/End: Original strand, 31356849 - 31356962
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| | ||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  31356849 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctattgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 31356948  T
Q  518 tcaagtgatcaaag 531  Q
    |||||  |||||||    
T  31356949 tcaagaaatcaaag 31356962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 531
Target Start/End: Original strand, 31366577 - 31366690
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| | ||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  31366577 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctattgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 31366676  T
Q  518 tcaagtgatcaaag 531  Q
    |||||  |||||||    
T  31366677 tcaagaaatcaaag 31366690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 1e-62; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 271 - 515
Target Start/End: Original strand, 36313457 - 36313698
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    |||||||||||||||| |||||||| |||||||||| | | |||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||     
T  36313457 gttcagaaggttgctcagaaggttcattagagcaaatccaaaaatcaatgtccacaccaagaacatgcaagaacagatgtgacatgaacatatcttatga 36313556  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || ||||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||| ||||||||| ||   | || ||||    
T  36313557 agacaatgattttgactttggatcaagaaatcattaaaggcatctatggtgattaaaggattaatggactttgatagttcttggtgtt---tgtgcgttc 36313653  T
Q  471 ttgagtgattaactaagacagaaacaaagtataaatcaaaccaag 515  Q
    ||||||||||||| |||||| ||||||||| |||| || ||||||    
T  36313654 ttgagtgattaaccaagacacaaacaaagtttaaagcataccaag 36313698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 150 - 513
Target Start/End: Original strand, 31104529 - 31104884
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacattatgcagtt 249  Q
    ||||||||  ||| ||||| | ||||||| ||||||| |||||||||||||||| |||||  ||||||||| |||| | |||||||||||||||| ||||    
T  31104529 acaaccttcataaggttcaaagtgttgaataacatcataatgttcagcataaagtacaaccgtcaaaaaggaaggagcctagaagaaacattatgaagtt 31104628  T
Q  250 catatg-aagaactcggaaaga------------gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacat 336  Q
    |||||| | |||| |  |||||            |||||||||||||||| |||||||| |||||| || || | |||| ||||||| ||||||||||||    
T  31104629 catatgtatgaacccataaagagttcaaaaggttgttcagaaggttgctcagaaggttcattagagaaagccaataaataaatgtccacaccaagaacat 31104728  T
Q  337 gcaagaacagatgtggcatggacatatcatatgcataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatg 436  Q
              ||||| |||| ||||||| |||||| | ||  |||| |||||||||||||||||||||||||| ||||||| ||        ||||||||    
T  31104729 ----------atgtgacatgaacatatcttatgcagacaataattttgactttggatcaagaaatcattaaaggcatctatggt--------gattaatg 31104810  T
Q  437 gaatttgattgttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaacca 513  Q
    || |||||| ||||||||||||   | |||||||||||||||||||| |||||| ||||||||| ||||||| ||||    
T  31104811 gactttgatagttcttggtatt---tgtgtgttcttgagtgattaaccaagacacaaacaaagtttaaatcatacca 31104884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 420 - 571
Target Start/End: Complemental strand, 20480795 - 20480643
Alignment:
Q  420 tgattaaaagattaatggaatttgattgttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaat 518  Q
    |||||||| | |||||||||||| || ||| || ||||||| |||||| || ||||||||||||||||||||  |||| ||| ||||||||||| ||| |    
T  20480795 tgattaaacggttaatggaatttaatagttttttggtatttcatatgtattattgagtgattaactaagacaagaacatagtttaaatcaaaccgagagt 20480696  T
Q  519 caagtgatcaaagaacattaaagcttatgaaaccagacagagttcagaaggtt 571  Q
    ||| ||||||||||||||| |||  ||||||  ||| ||||||||||||||||    
T  20480695 caaatgatcaaagaacattgaagactatgaactcagtcagagttcagaaggtt 20480643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 31104354 - 31104483
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||| ||||| | |||||||||||||||||| ||||| ||||||| |||| ||| ||||||| ||||||||         |||||||| ||| |||||||    
T  31104354 tccagaaatattaaaggattacttcatggataaacaagaatatttcaagtcatcggttacaaacaatgatg---------caaagaaatatttttttgga 31104444  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaaataa 146  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  31104445 cttcaaagaaagaatcatcttgtttgtcaaaacaaataa 31104483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 36313145 - 36313275
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| |||| || | |||||| ||||||||| ||||| |||||||||||| |||||||||||| |||  |||||         ||||| ||||||||    
T  36313145 atttccagaaatcataagggattatttcatggataaacaagaatatttaaagtcatctgttacaagaaatattgaac---------agaaatattctttt 36313235  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||| ||||||||||||||||||||| ||||||||||||||    
T  36313236 ggatttcaaagaaagaatcatcttgtttgtcaaaacaaat 36313275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 448 - 572
Target Start/End: Original strand, 35985645 - 35985768
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatg 547  Q
    |||||||| |||| |||||||||| |||||||||||||||||| ||| ||  ||||| ||||| |||||||||| |||||||| || ||||||| ||||     
T  35985645 ttcttggtttttattatgtgttctcgagtgattaactaagacaaaaataatttataagtcaaatcaagaatcaaatgatcaaa-aaaattaaagattata 35985743  T
Q  548 aaaccagacagagttcagaaggtta 572  Q
    || |||| ||||||| |||| ||||    
T  35985744 aacccagtcagagtttagaaagtta 35985768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 26192891 - 26192772
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  26192891 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 26192792  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  26192791 tcaagaaatcaaaggacatt 26192772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 26203451 - 26203332
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  26203451 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 26203352  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  26203351 tcaagaaatcaaaggacatt 26203332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 32069820 - 32069939
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || || |||| ||||||||    
T  32069820 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcataccaagaa 32069919  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  32069920 tcaagaaatcaaaggacatt 32069939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 27411528 - 27411647
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| | ||||||| || |||||||||| ||||| || || |||| ||||||||    
T  27411528 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctattgagtgttttactaagacaggaacaaggtttagatcataccaagaa 27411627  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  27411628 tcaagaaatcaaaggacatt 27411647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 706
Target Start/End: Original strand, 31105026 - 31105083
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    ||||||||| |||||||| |||||  ||| |||||| ||||||||||||| |||||||    
T  31105026 gaacattataaagaacatgcaaggtacacgtgacatgaataaatgtccagtaaagtac 31105083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 3e-50; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 271 - 459
Target Start/End: Complemental strand, 11431507 - 11431318
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaa-tcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatg 369  Q
    |||||||||||||||  ||| |||| |||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  11431507 gttcagaaggttgctaagaatgttcattagagcaaacccataaaatcaatgtccacaccaagaacatgcaagaacagatgtgacatgaacatatcttatg 11431408  T
Q  370 cataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtattt 459  Q
    || | || ||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||| || |||||||||||||    
T  11431407 cagacaatgattttgactttggatcaagaaatcgttaaagacatctatggtgattaaaggattaatggactttaatagttcttggtattt 11431318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 11431824 - 11431688
Alignment:
Q  8 tccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattcttttgga 107  Q
    |||| ||||||| |||||||||||||||||| ||||| |||||||||||| |||  || || |||||||||||||| ||||||||||| |||||||||||    
T  11431824 tccataaataataaaggattacttcatggataaacaagaatatttaaagtcatcgattgcatgcaatgatgaactagatgcaaagaaatattcttttgga 11431725  T
Q  108 cttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11431724 cttcaaagaaagaatcatcttgtttgtcaaaacaaat 11431688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 451 - 725
Target Start/End: Complemental strand, 12842158 - 12841887
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaa 550  Q
    |||||||||||| |||| ||||||||  ||||||||||||| |||||||| ||||||| |||||||  |||   ||||||| ||||||| |||||||||     
T  12842158 ttggtatttaatttgtgctcttgagtatttaactaagacaggaacaaagtttaaatcataccaagatacaa-aaatcaaaggacattaaggcttatgaac 12842060  T
Q  551 ccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatat-gatttaacaagaacaaaaccataaatatgtg 649  Q
    |||| ||| |||||||| |||| |   |||| |||||||| | | | ||| |||||||||| || ||| ||| ||  ||||||||  ||| |||| | ||    
T  12842059 ccagtcagggttcagaaagttaaactgagtttagaaggtt-ggacagagtttagaaggttgctcttatggatata--aagaacaagcccagaaatttatg 12841963  T
Q  650 aacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgacttagagcaatcaa 725  Q
    |||| ||| |||||||| || ||||||| ||||||||||||| | |||| |||||||  ||||||||| |||||||    
T  12841962 aacaatatgaagaacatacagggctcacgtgacataaataaaggcccagtaaagtacattgacttagatcaatcaa 12841887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 720 - 862
Target Start/End: Complemental strand, 12842086 - 12841944
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttcttagggacat 819  Q
    ||||||||||||||||| ||| ||||||||  ||| ||||||||||||  ||  |||| |||| |||   || ||||||||| |||| ||||| ||| ||    
T  12842086 aatcaaaggacattaaggcttatgaacccagtcagggttcagaaagttaaactgagtttagaaggttggacagagtttagaaggttgctcttatggatat 12841987  T
Q  820 caagaacaagcccataaattcatgaacattatgaagaacatac 862  Q
     ||||||||||||| ||||| ||||||| ||||||||||||||    
T  12841986 aaagaacaagcccagaaatttatgaacaatatgaagaacatac 12841944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 21446810 - 21446929
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| |||||||| || |||| ||||||||    
T  21446810 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaagtttagatcataccaagaa 21446909  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  21446910 tcaagaaatcaaaggacatt 21446929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 537
Target Start/End: Complemental strand, 21988688 - 21988579
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatc 527  Q
    ||||||||| |||||||   ||||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| |||||||||||||  |||    
T  21988688 attaatggactttgattaatttcttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaatcaagaaatc 21988589  T
Q  528 aaagaacatt 537  Q
    |||| |||||    
T  21988588 aaaggacatt 21988579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 537
Target Start/End: Complemental strand, 21998206 - 21998097
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatc 527  Q
    ||||||||| |||||||   ||||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| |||||||||||||  |||    
T  21998206 attaatggactttgattaatttcttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaatcaagaaatc 21998107  T
Q  528 aaagaacatt 537  Q
    |||| |||||    
T  21998106 aaaggacatt 21998097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 791149 - 791236
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| || ||||||||||  ||||||| |||||    
T  791149 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcatactaagaatcaagaaatcaaaggacatt 791236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 7757176 - 7757263
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || |||||||||  ||||| || ||||||| |||||||||||||  ||||||| |||||    
T  7757176 cttggtatttaacttgtgctcttgagtgttttactaagacatgaacaaggtttaaatcataccaagaatcaagaaatcaaaggacatt 7757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 798 - 860
Target Start/End: Original strand, 37295481 - 37295543
Alignment:
Q  798 agaatgttgttcttagggacatcaagaacaagcccataaattcatgaacattatgaagaacat 860  Q
    |||| |||||||||| | | |||||||||||| ||||||||||||||||| || |||||||||    
T  37295481 agaaggttgttcttatgaatatcaagaacaagtccataaattcatgaacaatacgaagaacat 37295543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 860
Target Start/End: Original strand, 18536144 - 18536213
Alignment:
Q  791 atagtttagaatgttgttcttagggacatcaagaacaagcccataaattcatgaacattatgaagaacat 860  Q
    ||||||||||| ||||||||||  |  |||||||||||||||| |||||||||||| |||| || |||||    
T  18536144 atagtttagaaggttgttcttatagttatcaagaacaagcccaaaaattcatgaactttatcaataacat 18536213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 706
Target Start/End: Original strand, 20098427 - 20098484
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||| ||||||| ||| |||||| |||||||||| ||||||||||||| |||||||    
T  20098427 gaacatcatcaagagcatgcaaggcacacatgacatgaataaatgtccaggaaagtac 20098484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 25034677 - 25034796
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || | |||||||| |||||  | ||||||| ||||||||    
T  25034677 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttagtaagacaggaacaagttttaaatcataccaagaa 25034776  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  25034777 tcaagaaatcaaaggacatt 25034796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 37295365 - 37295433
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    ||||||||||||||| |||  ||||||||| ||||||||||||  |||||| | ||||||| |||||||    
T  37295365 ttcttggtatttaatttgtactcttgagtgtttaactaagacatgaacaaattttaaatcataccaaga 37295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 537
Target Start/End: Complemental strand, 2690965 - 2690855
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtg-attaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgat 526  Q
    ||||||||| |||||||   ||||||||||||||  |||| |||||||||  || |||||||||| |||||||| ||||| | ||||||| |||||  ||    
T  2690965 attaatggactttgattaatttcttggtatttaacttgtgctcttgagtgtttttactaagacaggaacaaagtttaaattataccaagattcaagaaat 2690866  T
Q  527 caaagaacatt 537  Q
    ||||| |||||    
T  2690865 caaaggacatt 2690855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 5868064 - 5867978
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaa 514  Q
    ||||||||| |||||||   ||||||||||||||  |||| |||| |||| ||||||||||| | |||||||| ||||||| |||||    
T  5868064 attaatggactttgattaatttcttggtatttaacttgtgctcttaagtgtttaactaagaccggaacaaagtttaaatcataccaa 5867978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 11431640 - 11431549
Alignment:
Q  150 acaacctttttaaagttcataatgttgaagaacatcagaatgttcagcataaagaacaactatcaaaaaggcaggaacttagaagaaacatt 241  Q
    ||||||||  ||| ||||| | ||||||| ||||||| |||||||| ||||||  |||||  ||||||||| ||||||  ||||||||||||    
T  11431640 acaaccttcataaggttcaaagtgttgaataacatcataatgttcaacataaaatacaaccgtcaaaaaggaaggaacccagaagaaacatt 11431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 782
Target Start/End: Complemental strand, 26362930 - 26362868
Alignment:
Q  720 aatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaa 782  Q
    ||||||||||||| |||||||  |||| ||  |||||||||||| |||||||| |||||||||    
T  26362930 aatcaaaggacataaagacttaagaactcagtcagagttcagaaggttggacagagttcagaa 26362868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 95; Significance: 5e-46; HSPs: 3)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 271 - 516
Target Start/End: Complemental strand, 1654 - 1408
Alignment:
Q  271 gttcagaaggttgctcggaaggttcgttagagcaaacctagaaatcaatgtccccaccaagaacatgcaagaacagatgtggcatggacatatcatatgc 370  Q
    ||||||||||||||||  ||||||  |||||||||||| | |||||||||||| |||||||||||||| |||||| ||||| |||| ||||||| |||||    
T  1654 gttcagaaggttgctcataaggtttattagagcaaacccataaatcaatgtccacaccaagaacatgctagaacaaatgtgacatgaacatatcttatgc 1555  T
Q  371 ataaaaggatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttc 470  Q
    | | || |||||  ||| ||||||||||||||||||||||||||||| || |||||| |||||||| | ||||||  |||||||||||   | || ||||    
T  1554 agacaatgattttaactatggatcaagaaatcattaaagacatctatggttattaaaggattaatgaactttgatatttcttggtatt---tgtgcgttc 1458  T
Q  471 ttgagtg----attaactaagacagaaacaaagtataaatcaaaccaaga 516  Q
    |||||||    |||||| |||||| ||||||||| ||||||| |||||||    
T  1457 ttgagtgattaattaaccaagacaaaaacaaagtttaaatcataccaaga 1408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 3529 - 3399
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||         ||||||| ||| ||||||||    
T  3529 atttccagaaatattaaaggattacttcatggataaacaagaatatttaaagtcatcggttacaagcaatg---------atgcaaataaatattctttt 3439  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  3438 ggacttcaaagaaagaatcatcttgtttgtcaaaataaat 3399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 706
Target Start/End: Complemental strand, 1282 - 1225
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||||||||||||| |||||  ||  |||||| ||||||||||||| |||||||    
T  1282 gaacattatcaagaacatgcaaggtacatgtgacatgaataaatgtccagcaaagtac 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 717 - 860
Target Start/End: Complemental strand, 40409622 - 40409479
Alignment:
Q  717 agcaatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttcttaggga 816  Q
    ||||||||||||||||||||||||||||||| |  ||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||| ||     
T  40409622 agcaatcaaaggacattaagacttttgaaccgagtcagagttcataaagttagacatagttcagaatgttcagcatagttcagaaggttgttcttatggt 40409523  T
Q  817 catcaagaacaagcccataaattcatgaacattatgaagaacat 860  Q
     |||||||||||||||| |||||||||| |||||| ||||||||    
T  40409522 tatcaagaacaagcccagaaattcatgaccattatcaagaacat 40409479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 378 - 537
Target Start/End: Complemental strand, 72831 - 72675
Alignment:
Q  378 gatttcgactttggatcaagaaatcattaaagacatctattgtgattaaaagattaatggaatttgattgttcttggtatttaatatgtgttcttgagtg 477  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||| || |||||| ||||||||||||   | || |||||||||||    
T  72831 gatttcgactttggatcaagaaatcattaaagacgtctatggcgattaaatgattaattgactttgatagttcttggtatt---tgtgcgttcttgagtg 72735  T
Q  478 attaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    |||||| |||||| ||||||||| ||||||| |||||||  ||||  ||||||| |||||    
T  72734 attaaccaagacacaaacaaagtttaaatcataccaagatacaagaaatcaaaggacatt 72675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 448 - 725
Target Start/End: Complemental strand, 40409694 - 40409420
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatg 547  Q
    ||||||||||||||| | |||||||||||| ||||||||||||  ||||||| ||||||||| ||||||| ||||  ||||||| |||||||  ||| ||    
T  40409694 ttcttggtatttaattt-tgttcttgagtgtttaactaagacaagaacaaagaataaatcaatccaagaagcaagcaatcaaaggacattaagacttttg 40409596  T
Q  548 aaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatg 647  Q
    || | || ||||||||| || |||| | | |||| |||| |||| |  |||||  |||||||||||| ||||  ||| |||||||||  ||| ||||       
T  40409595 aaccgagtcagagttcataaagttagacatagttcagaatgttc-agcatagttcagaaggttgttcttatg-gttatcaagaacaagcccagaaattca 40409498  T
Q  648 tgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgacttagagcaatcaa 725  Q
    ||| ||||||||||||||| |||||||||||| | ||||||||| |  ||| |||||||  ||| ||||| |||||||    
T  40409497 tgaccattatcaagaacatgcaaggctcacataatataaataaaagctcagtaaagtactttgaattagatcaatcaa 40409420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 452 - 706
Target Start/End: Complemental strand, 16135785 - 16135534
Alignment:
Q  452 tggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaac 551  Q
    ||||||||||| |||||||||||||| ||||||||||||  || ||||| ||||||| |||||||  | ||  || |||| |||| ||  |||||||| |    
T  16135785 tggtatttaatttgtgttcttgagtgtttaactaagacaataaaaaagtttaaatcataccaagataccagaaattaaaggacataaagacttatgaacc 16135686  T
Q  552 cagacagagttcagaaggttacataaagttaagaaggttcga-agatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatgtga 650  Q
    ||| |||||||||||| |||| |   |||| |||||||| || ||||  |  ||||| ||| || ||||   || ||||||| || ||| ||||   |||    
T  16135685 cagtcagagttcagaaagttaaactgagttcagaaggttggacagat--ttcagaagattgctcttatg-gctatcaagaac-aacccagaaattcatga 16135590  T
Q  651 acattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||||||||||||||||| |||  ||||||||||||| | ||||||||||||    
T  16135589 acattatcaagaacattcaaggttcatgtgacataaataaaagcccagaaaagtac 16135534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 452 - 538
Target Start/End: Complemental strand, 18618819 - 18618733
Alignment:
Q  452 tggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatta 538  Q
    ||||||||||||||| ||||||| |||| |||||  | |  |||||||||||||| |||| ||||||||||||||||| ||||||||    
T  18618819 tggtatttaatatgtattcttgaatgatgaactacaatatgaacaaagtataaataaaactaagaatcaagtgatcaaggaacatta 18618733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 17488070 - 17488189
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   | ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  17488070 tgattaaagaattaatggactttgattaactccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 17488169  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  17488170 tcaagaaatcaaaggacatt 17488189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 44639596 - 44639477
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttctt-ggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  ||||| |||||||||| |||| ||||||||| || |||||||||| |||||  | ||||||| ||||||||    
T  44639596 tgattaaagaattaatggactttgattaattctttggtatttaatttgtgctcttgagtgttttactaagacaggaacaagatttaaatcataccaagaa 44639497  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  44639496 tcaagaaatcaaaggacatt 44639477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 2999387 - 2999268
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  2999387 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 2999288  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  2999287 tcaagaaatcaaaggacatt 2999268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 29131670 - 29131551
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   |||||||||||||   |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  29131670 tgattaaagaattaatggactttgattaatttcttggtatttatcttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 29131571  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  29131570 tcaagaaatcaaaggacatt 29131551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 521
Target Start/End: Complemental strand, 38931081 - 38930978
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  38931081 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcacaccaagaa 38930982  T
Q  518 tcaa 521  Q
    ||||    
T  38930981 tcaa 38930978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 521
Target Start/End: Complemental strand, 38958417 - 38958314
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  38958417 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 38958318  T
Q  518 tcaa 521  Q
    ||||    
T  38958317 tcaa 38958314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 45014112 - 45014231
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || || |||| ||||||||    
T  45014112 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttagatcataccaagaa 45014211  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  45014212 tcaagaaatcaaaggacatt 45014231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 706
Target Start/End: Complemental strand, 72581 - 72524
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    ||||| |||||||||||| |||||  |||||||||| ||||||||||||| |||||||    
T  72581 gaacaatatcaagaacatgcaaggtacacatgacatgaataaatgtccagtaaagtac 72524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 24697183 - 24697064
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || ||||||| || ||||| || || |||| ||||||||    
T  24697183 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagataggaacaaggtttagatcataccaagaa 24697084  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  24697083 tcaagaaatcaaaggacatt 24697064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 522
Target Start/End: Complemental strand, 15479408 - 15479337
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaag 522  Q
    |||||||||||  |||| ||||||||| ||||||||||||| |||||||| ||| ||  |||||||| ||||    
T  15479408 ttggtatttaacttgtgctcttgagtgtttaactaagacaggaacaaagtttaattcgtaccaagaaacaag 15479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 45024189 - 45024308
Alignment:
Q  420 tgattaaaagattaatggaatttgattg-ttc-ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  ||| |||||||||||  |||| ||||||||| || |||||||||  ||||| || || |||| ||||||||    
T  45024189 tgattaaagaattaatggactttgattaattcattggtatttaacttgtgctcttgagtgttttactaagacaagaacaaggtttagatcataccaagaa 45024288  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  45024289 tcaagaaatcaaaggacatt 45024308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 448 - 691
Target Start/End: Complemental strand, 242338 - 242096
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatg 547  Q
    |||| |||||||||| |||||||||| ||| |||||||||||| ||||||| |||||||||||| || || ||||  |||||||||||||||    |||     
T  242338 ttctaggtatttaatttgtgttcttgggtgtttaactaagacaaaaacaaaatataaatcaaactaaaaagcaagcaatcaaagaacattaagatatata 242239  T
Q  548 aaaccagacagagttcagaaggttacataaagttaagaaggttcgaagatagtgtagaaggttgttcatatgatttaacaagaacaaaaccataaatatg 647  Q
    || |||  ||||||||||||||||  | | |||| ||||||||| |||||| |  | |||||||||| ||||| ||| ||| |||||  ||||||| |      
T  242238 aacccattcagagttcagaaggttgaacatagttcagaaggttc-aagatatttcataaggttgttcttatga-ttatcaaaaacaagcccataaacaca 242141  T
Q  648 tgaacattatcaaga-acattcaaggctcacatgacataaataaa 691  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||    
T  242140 tgaatattatcaagacacattcaaggttcacatgacataaataaa 242096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 717 - 856
Target Start/End: Complemental strand, 242265 - 242126
Alignment:
Q  717 agcaatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaatgttcagcatagtttagaatgttgttcttaggga 816  Q
    ||||||||||| |||||||||  | | ||||||  |||||||||||| |||| ||||||||||||| |||||  ||| || | || |||||||||| |      
T  242265 agcaatcaaagaacattaagatatataaacccattcagagttcagaaggttgaacatagttcagaaggttcaagatatttcataaggttgttcttatgat 242166  T
Q  817 catcaagaacaagcccataaattcatgaacattatgaaga 856  Q
     ||||| ||||||||||||||  |||||| ||||| ||||    
T  242165 tatcaaaaacaagcccataaacacatgaatattatcaaga 242126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 448 - 571
Target Start/End: Complemental strand, 29709924 - 29709802
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatg 547  Q
    |||||| |||||||| ||| ||||||||||||||||||||||   ||||| |||||||||||| |||||| ||||| |||| ||||||||||||||||||    
T  29709924 ttcttgttatttaatgtgtattcttgagtgattaactaagacttgaacaa-gtataaatcaaatcaagaagcaagtaatcatagaacattaaagcttatg 29709826  T
Q  548 aaaccagacagagttcagaaggtt 571  Q
    || |||| ||||||||||||||||    
T  29709825 aacccagtcagagttcagaaggtt 29709802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 448 - 549
Target Start/End: Complemental strand, 11044847 - 11044746
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatg 547  Q
    |||||||||| |||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||  || |||||| ||||||||||||||||    
T  11044847 ttcttggtatctaatttgtgttcttgagtgtttaactaaaacataaacaaagtataaatcaaaccaagaatcgggtcatcaaaaaacattaaagcttatg 11044748  T
Q  548 aa 549  Q
    ||    
T  11044747 aa 11044746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 605 - 714
Target Start/End: Complemental strand, 29709788 - 29709679
Alignment:
Q  605 aaggttgttcatatgatttaacaagaacaaaaccataaatatgtgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagt 704  Q
    |||||||||| |||| |||| ||| |||||  | | |||| | ||||||||||||||||||| |||||||||| ||||||||||||| || |||||||||    
T  29709788 aaggttgttcttatggtttatcaaaaacaagtctagaaatgtatgaacattatcaagaacatccaaggctcacgtgacataaataaaagttcagaaaagt 29709689  T
Q  705 accatgactt 714  Q
    |  |||||||    
T  29709688 attatgactt 29709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 648 - 722
Target Start/End: Complemental strand, 21542744 - 21542670
Alignment:
Q  648 tgaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtaccatgacttagagcaat 722  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| | | ||||||||||  ||||||||| ||||    
T  21542744 tgaaccttatcaagaacatgcaaggctcacatgacataaataaaagcctagaaaagtacattgacttagatcaat 21542670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 564
Target Start/End: Complemental strand, 21542917 - 21542807
Alignment:
Q  454 gtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaacca 553  Q
    ||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||  ||||||| ||||  || |||| | |||||  |||||||| |||    
T  21542917 gtatttaatttgtattcttgagtgtttaactaagacataaacaaagtataaatcattccaagaagcaagcaattaaaggagattaagacttatgaaccca 21542818  T
Q  554 gacagagttca 564  Q
    | || ||||||    
T  21542817 gtcatagttca 21542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 8982703 - 8982822
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  8982703 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 8982802  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  8982803 tcaagaaatcaaaggacatt 8982822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 25432272 - 25432359
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| |||||||||||||  ||||||| |||||    
T  25432272 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaatcaagaaatcaaaggacatt 25432359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 706
Target Start/End: Complemental strand, 10508611 - 10508554
Alignment:
Q  649 gaacattatcaagaacattcaaggctcacatgacataaataaatgtccagaaaagtac 706  Q
    |||||||||||||| |||||||| | ||| |||||| |||||||||||||||||||||    
T  10508611 gaacattatcaagagcattcaagtcacacgtgacatgaataaatgtccagaaaagtac 10508554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 12674 - 12555
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||| ||    
T  12674 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaaaaa 12575  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  12574 tcaagaaatcaaaggacatt 12555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 1686002 - 1685883
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  1686002 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 1685903  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  1685902 tcaagaaatcaaaggacatt 1685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 6421682 - 6421801
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || ||||||| || ||||| || ||||||| ||||||||    
T  6421682 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagataggaacaaggtttaaatcataccaagaa 6421781  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  6421782 tcaagaaatcaaaggacatt 6421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 6432122 - 6432241
Alignment:
Q  420 tgattaaaagattaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||   ||||||||||| |   |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  6432122 tgattaaagaattaatggactttgattaatttcttggtattcagcttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 6432221  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  6432222 tcaagaaatcaaaggacatt 6432241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 8972120 - 8972239
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  8972120 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 8972219  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  8972220 tcaagaaatcaaaggacatt 8972239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 10012914 - 10012795
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||  ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  10012914 tgattaaagaattaatggactttgattaattccttggtatttaacttgtactcttgagtgttttactaagacaggaacaatgtttaaatcataccaagaa 10012815  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  10012814 tcaagaaatcaaaggacatt 10012795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 12804974 - 12804855
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  12804974 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 12804875  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  12804874 tcaagaaatcaaaggacatt 12804855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 16336129 - 16336010
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| | ||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  16336129 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctattgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 16336030  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  16336029 tcaagaaatcaaaggacatt 16336010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 521
Target Start/End: Original strand, 20491467 - 20491538
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaa 521  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||||||    
T  20491467 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaatcaa 20491538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 717 - 782
Target Start/End: Complemental strand, 21542850 - 21542785
Alignment:
Q  717 agcaatcaaaggacattaagacttttgaacccaaacagagttcagaaagttggacatagttcagaa 782  Q
    |||||| |||||| |||||||||| ||||||||  || |||||| |||||||||||| ||||||||    
T  21542850 agcaattaaaggagattaagacttatgaacccagtcatagttcataaagttggacattgttcagaa 21542785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 571
Target Start/End: Original strand, 17732308 - 17732428
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaa 550  Q
    |||||||||||  |||| ||||||||| ||||||||||||| ||||| || ||| ||| ||||||||  |||  ||||||| |||| ||  |||| |||     
T  17732308 ttggtatttaacttgtgctcttgagtgtttaactaagacaggaacaaggtttaattcataccaagaaataagaaatcaaaggacataaagacttaagaac 17732407  T
Q  551 ccagacagagttcagaaggtt 571  Q
     ||| |||||||| |||||||    
T  17732408 tcagtcagagttcggaaggtt 17732428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 571
Target Start/End: Original strand, 19033539 - 19033659
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaa 550  Q
    |||||||||||  |||| ||||||||| ||||||||||||| ||||| || ||| ||| ||||||||  |||  ||||||| |||| ||  |||| |||     
T  19033539 ttggtatttaacttgtgctcttgagtgtttaactaagacaggaacaaggtttaattcataccaagaaataagaaatcaaaggacataaagacttaagaac 19033638  T
Q  551 ccagacagagttcagaaggtt 571  Q
     ||| |||||||| |||||||    
T  19033639 tcagtcagagttcggaaggtt 19033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 24792856 - 24792902
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaa 497  Q
    |||||||||||  |||| ||||||||| |||||||||||||||||||    
T  24792856 ttggtatttaacttgtgctcttgagtggttaactaagacagaaacaa 24792902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 430 - 537
Target Start/End: Complemental strand, 55478720 - 55478611
Alignment:
Q  430 attaatggaatttgattg--ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatc 527  Q
    ||||||||| |||||||   ||||||||||||||  |||| | ||||||| || |||||||| | ||||| || ||||||| ||||||| |||||  |||    
T  55478720 attaatggactttgattaatttcttggtatttaacttgtgctattgagtgttttactaagacgggaacaaggtttaaatcataccaagattcaagaaatc 55478621  T
Q  528 aaagaacatt 537  Q
    |||| |||||    
T  55478620 aaaggacatt 55478611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 463 - 572
Target Start/End: Complemental strand, 29012 - 28903
Alignment:
Q  463 atgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacattaaagcttatgaaaccagacagagtt 562  Q
    |||| ||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| |  |||| ||||||| |||| |||||||    
T  29012 atgtattcttgagtgattaactaatacaggaacaaagtataaatcatatcaagaatcaattgatcaaagaatacgaaagtttatgaatccagtcagagtt 28913  T
Q  563 cagaaggtta 572  Q
     |||||||||    
T  28912 tagaaggtta 28903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 194 - 64
Alignment:
Q  5 atttccaaaaataatcaaggattacttcatggatcaacaaaaatatttaaagtaatctgttacaagcaatgatgaactaaatgcaaagaaacattctttt 104  Q
    ||||||| |||| || | |||||| ||||||||| ||||| |||||||||||| |||||||| ||| |||  |||||         ||||| ||||||||    
T  194 atttccagaaatcataagggattatttcatggataaacaagaatatttaaagtcatctgttataagaaattttgaac---------agaaatattctttt 104  T
Q  105 ggacttcaaagaaagaatcatcttgattgtcaaaacaaat 144  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  103 ggacttcaaagaaagaatcatcttgtttgtcaaaacaaat 64  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 4866 - 4779
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || |||||||||| |||||||| ||||||| |||||||||||||  ||||||| |||||    
T  4866 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaagtttaaatcataccaagaatcaagaaatcaaaggacatt 4779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 7751 - 7870
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || | |||||||| |||||||| ||||||| ||||||||    
T  7751 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttaataagacaggaacaaagtttaaatcataccaagaa 7850  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  7851 tcaagaaatcaaaggacatt 7870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 75405 - 75286
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| ||||||||    
T  75405 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttaaatcataccaagaa 75306  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  75305 tcaagaaatcaaaggacatt 75286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 537
Target Start/End: Original strand, 52346 - 52465
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  52346 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 52445  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  52446 tcaagaaatcaaaggacatt 52465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 450 - 537
Target Start/End: Complemental strand, 93508 - 93421
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||  |||| ||||||||| || ||||| |||| ||||| || ||||||| |||||||||||||  ||||||| |||||    
T  93508 cttggtatttaacttgtgctcttgagtgttttactaaaacaggaacaaggtttaaatcataccaagaatcaagaaatcaaaggacatt 93421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 537
Target Start/End: Original strand, 12788 - 12874
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    |||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| |||||||||||||  ||||||| |||||    
T  12788 ttggtatttaaattgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaatcaagaaatcaaaggacatt 12874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 531
Target Start/End: Original strand, 87345 - 87458
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| ||||||||| || |||||||||| ||||| || | ||||| ||||||||    
T  87345 tgattaaagaattaatggactttgattaattccttggtatttaacttgtgctcttgagtgttttactaagacaggaacaaggtttgaatcataccaagaa 87444  T
Q  518 tcaagtgatcaaag 531  Q
    |||||  |||||||    
T  87445 tcaagaaatcaaag 87458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 517
Target Start/End: Complemental strand, 267579 - 267513
Alignment:
Q  451 ttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    |||||||||||  |||  ||||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  267579 ttggtatttaacttgtcctcttgagtgtttaactaagacagaaacaaagtttaactcataccaagaa 267513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 448 - 537
Target Start/End: Complemental strand, 29421 - 29332
Alignment:
Q  448 ttcttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaagaacatt 537  Q
    ||||||||||||||  |||| ||||||||| || |||||||||  ||||| || ||||| | ||||||| |||||| ||||||| |||||    
T  29421 ttcttggtatttaacttgtgctcttgagtgttttactaagacatgaacaaggtttaaattataccaagattcaagtaatcaaaggacatt 29332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 531
Target Start/End: Original strand, 15261 - 15342
Alignment:
Q  450 cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaatcaagtgatcaaag 531  Q
    ||||||||||||  |||| ||||||||| || |||||||||| ||||| || ||||||| || ||||||||||  |||||||    
T  15261 cttggtatttaacttgtgctcttgagtgttttactaagacaggaacaatgtttaaatcatacgaagaatcaagaaatcaaag 15342  T

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Target: scaffold0277 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 537
Target Start/End: Complemental strand, 20063 - 19945
Alignment:
Q  420 tgattaaaagattaatggaatttgattgtt--cttggtatttaatatgtgttcttgagtgattaactaagacagaaacaaagtataaatcaaaccaagaa 517  Q
    ||||||||  ||||||||| |||||||  |  ||||||||||||  |||| |||||||||||| |||||||||| ||||| || | ||| | ||||||||    
T  20063 tgattaaagaattaatggactttgattaattccttggtatttaacctgtgctcttgagtgatttactaagacaggaacaaggt-ttaattataccaagaa 19965  T
Q  518 tcaagtgatcaaagaacatt 537  Q
    |||||  ||||||| |||||    
T  19964 tcaagaaatcaaaggacatt 19945  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 812
Target Start/End: Original strand, 65223 - 65280
Alignment:
Q  756 gttcagaaagttggacatagttcagaatgttc-agcatagtttagaatgttgttctta 812  Q
    |||||||||||||  ||||||||||||||||| |||| |||| |||| ||||||||||    
T  65223 gttcagaaagttgctcatagttcagaatgttcaagcagagttcagaaggttgttctta 65280  T

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