View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7883_low_13 (Length: 326)

Name: NF7883_low_13
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7883_low_13
NF7883_low_13
[»] chr7 (13 HSPs)
chr7 (1-310)||(6711843-6712147)
chr7 (2-306)||(25033717-25034021)
chr7 (3-307)||(4316431-4316711)
chr7 (168-306)||(4328494-4328632)
chr7 (15-192)||(8779901-8780078)
chr7 (4-63)||(1864763-1864822)
chr7 (15-192)||(8786740-8786917)
chr7 (2-61)||(3194324-3194383)
chr7 (139-205)||(4541750-4541816)
chr7 (139-200)||(2325284-2325345)
chr7 (15-108)||(33610177-33610270)
chr7 (139-198)||(1614498-1614557)
chr7 (15-108)||(19514901-19514994)
[»] chr6 (29 HSPs)
chr6 (3-310)||(32795899-32796207)
chr6 (4-307)||(13168757-13169061)
chr6 (2-197)||(17521866-17522060)
chr6 (2-166)||(9414768-9414933)
chr6 (4-199)||(23639349-23639543)
chr6 (15-199)||(20217924-20218108)
chr6 (15-199)||(22111949-22112133)
chr6 (8-192)||(26018409-26018593)
chr6 (8-181)||(26139113-26139286)
chr6 (8-181)||(26157782-26157955)
chr6 (8-192)||(25508040-25508224)
chr6 (15-200)||(24545069-24545254)
chr6 (15-108)||(29254441-29254534)
chr6 (86-199)||(34108484-34108596)
chr6 (20-108)||(4741446-4741534)
chr6 (144-200)||(19695998-19696054)
chr6 (15-95)||(19994055-19994135)
chr6 (139-205)||(32545154-32545221)
chr6 (139-199)||(17793421-17793481)
chr6 (146-200)||(25785831-25785885)
chr6 (139-205)||(26822439-26822505)
chr6 (139-200)||(15172806-15172867)
chr6 (139-200)||(19569615-19569676)
chr6 (139-200)||(22600797-22600858)
chr6 (139-200)||(28079942-28080003)
chr6 (170-199)||(29094157-29094186)
chr6 (139-199)||(12659890-12659950)
chr6 (139-199)||(19612179-19612239)
chr6 (139-199)||(23346623-23346683)
[»] chr2 (17 HSPs)
chr2 (2-310)||(24017996-24018301)
chr2 (2-306)||(22577725-22578026)
chr2 (102-199)||(29952115-29952211)
chr2 (86-199)||(36129605-36129717)
chr2 (15-200)||(24365764-24365950)
chr2 (102-200)||(31590019-31590116)
chr2 (15-200)||(41653059-41653243)
chr2 (86-199)||(29956874-29956986)
chr2 (2-199)||(13004873-13005070)
chr2 (2-58)||(25592695-25592751)
chr2 (146-200)||(23797856-23797910)
chr2 (139-200)||(36684884-36684945)
chr2 (139-199)||(22558276-22558336)
chr2 (144-199)||(19012457-19012512)
chr2 (15-94)||(25858140-25858219)
chr2 (146-200)||(25803239-25803292)
chr2 (15-71)||(23698383-23698439)
[»] chr1 (19 HSPs)
chr1 (2-306)||(24680521-24680816)
chr1 (2-199)||(15421557-15421753)
chr1 (2-199)||(2130406-2130602)
chr1 (2-63)||(17739289-17739350)
chr1 (66-199)||(21925044-21925178)
chr1 (139-200)||(1593758-1593819)
chr1 (139-200)||(12059939-12060000)
chr1 (139-200)||(25727536-25727597)
chr1 (139-200)||(25735944-25736005)
chr1 (139-205)||(46502350-46502416)
chr1 (139-200)||(20498139-20498200)
chr1 (139-207)||(15346294-15346364)
chr1 (20-63)||(16527247-16527290)
chr1 (139-197)||(20860143-20860201)
chr1 (139-197)||(30818643-30818701)
chr1 (139-200)||(19874577-19874638)
chr1 (139-200)||(20448990-20449051)
chr1 (139-200)||(20534756-20534817)
chr1 (139-198)||(16527112-16527172)
[»] scaffold0035 (2 HSPs)
scaffold0035 (2-276)||(30516-30787)
scaffold0035 (2-95)||(31465-31558)
[»] chr4 (17 HSPs)
chr4 (2-307)||(13882865-13883170)
chr4 (2-272)||(12347758-12348027)
chr4 (2-199)||(55268232-55268428)
chr4 (2-198)||(4743242-4743437)
chr4 (2-58)||(24493403-24493459)
chr4 (139-200)||(16953368-16953429)
chr4 (157-199)||(18750077-18750119)
chr4 (157-199)||(18750309-18750351)
chr4 (139-200)||(13622877-13622938)
chr4 (106-181)||(17169334-17169409)
chr4 (106-181)||(17174894-17174969)
chr4 (146-200)||(8091343-8091397)
chr4 (139-200)||(11902065-11902127)
chr4 (139-200)||(12345402-12345463)
chr4 (142-199)||(53689839-53689896)
chr4 (15-95)||(39288-39368)
chr4 (139-199)||(11921891-11921951)
[»] chr8 (14 HSPs)
chr8 (2-307)||(31469060-31469365)
chr8 (6-181)||(15636458-15636632)
chr8 (15-108)||(22725341-22725434)
chr8 (86-191)||(18571829-18571933)
chr8 (6-81)||(15634671-15634746)
chr8 (139-200)||(6570061-6570122)
chr8 (139-200)||(23456167-23456228)
chr8 (139-200)||(15760164-15760226)
chr8 (146-200)||(17127427-17127481)
chr8 (8-108)||(21140118-21140218)
chr8 (86-198)||(25431549-25431660)
chr8 (139-198)||(24887522-24887581)
chr8 (139-181)||(9318423-9318465)
chr8 (139-200)||(23503684-23503745)
[»] chr3 (13 HSPs)
chr3 (2-124)||(14826914-14827036)
chr3 (2-199)||(12696971-12697167)
chr3 (2-199)||(17576702-17576898)
chr3 (15-200)||(17051191-17051377)
chr3 (146-200)||(2006546-2006600)
chr3 (15-193)||(22039294-22039473)
chr3 (46-200)||(17210073-17210227)
chr3 (139-181)||(2722539-2722581)
chr3 (139-181)||(11399465-11399507)
chr3 (139-200)||(8685291-8685352)
chr3 (139-192)||(40847060-40847113)
chr3 (144-196)||(17775372-17775424)
chr3 (144-196)||(19076673-19076725)
[»] chr5 (10 HSPs)
chr5 (2-183)||(18091437-18091617)
chr5 (139-205)||(35762551-35762617)
chr5 (2-199)||(19222370-19222566)
chr5 (139-200)||(20724293-20724354)
chr5 (20-200)||(31757583-31757762)
chr5 (144-200)||(22949162-22949218)
chr5 (154-200)||(22942945-22942991)
chr5 (139-200)||(12322857-12322918)
chr5 (139-200)||(16677661-16677722)
chr5 (160-200)||(34222557-34222597)
[»] scaffold0664 (1 HSPs)
scaffold0664 (3-199)||(3644-3841)
[»] scaffold0094 (1 HSPs)
scaffold0094 (27-127)||(6075-6175)
[»] scaffold0021 (1 HSPs)
scaffold0021 (15-196)||(100664-100845)
[»] scaffold0713 (1 HSPs)
scaffold0713 (8-181)||(6170-6343)
[»] scaffold0362 (1 HSPs)
scaffold0362 (15-192)||(8675-8852)
[»] scaffold0001 (1 HSPs)
scaffold0001 (144-192)||(82060-82108)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 6712147 - 6711843
Alignment:
Q  1 cggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtc 100  Q
    ||||||||||||  |||| |||| |||||||  ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6712147 cggtttcaataataatcaaccatcagaatagatgtggttgttattggaacacactcattgatttcaagagaaaccttgataggctttagagaaaccagtc 6712048  T
Q  101 cttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6712047 tttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaggaaccaataatcccgagacgctttttattatta 6711948  T
Q  201 attttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6711947 attttcattaatcaaaatcaaaacttttcaaactttaatctttca-----tcaccattaaatagagaatcaaaattacatcacctccctgctggaacgat 6711853  T
Q  301 actttttact 310  Q
    ||||||||||    
T  6711852 actttttact 6711843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 25034021 - 25033717
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||| |||||||||||||| |||     
T  25034021 ggtttcaataacgatcaaccatgagaatagacgtgattgttattgaaacacgctcattgattccgagaggaaccttgatatgctttagagaaaccggtct 25033922  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaa 201  Q
    ||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25033921 ttagaaatagatttaacataagatttaggta-tagggtcagattgtgaaagatttgtcattatgatgaaccaataatcccgagacgctttttatttttaa 25033823  T
Q  202 tttt-cattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgat 300  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| ||| ||||| ||||| ||||||||| ||||||| || |||| || |  ||||||    
T  25033822 ttttacatcaatcaaaatccaaacttttcaaactttaatctttcagctaatcaccgttaaaaagagaatcataattacaacaactccatgttaaaacgat 25033723  T
Q  301 actttt 306  Q
    ||||||    
T  25033722 actttt 25033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 4316711 - 4316431
Alignment:
Q  3 gtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcct 102  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||                     |||||| ||| |    
T  4316711 gtttcaataacgatcaaccatgagaataggcgtggttgttattgggagacactcattgatttcgaga---------------------gaaaccggtctt 4316633  T
Q  103 tagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaat 202  Q
    ||||| |||||||||||||||||||||||||   || ||||||||||||||||||||||||||| |||||||||||||| |  ||||||||| |||||||    
T  4316632 tagaagtagatttaacataagatttaggtat---ggatggattgtgaaagatttgtcattatgacgaaccaataatcccaatgcgctttttaatattaat 4316536  T
Q  203 tttcattaat-caaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgata 301  Q
    ||| || |||  |||| | |||||||  || || ||| |||||| ||| ||||| ||||| ||||||||| ||||||| || ||| ||| || |||||||    
T  4316535 ttt-atcaataaaaaacccaaactttataacctataaactttcagctaatcacctttaaaaagagaatcacaattacaacaactctctgttgaaacgata 4316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 306
Target Start/End: Complemental strand, 4328632 - 4328494
Alignment:
Q  168 gaaccaataatcccgagacgctttttattattaattttcattaatc-aaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagag 266  Q
    ||||||||||||||||| |||||||||||||||||||| || |||| |||||| |||||||| || |||||| |||||| ||| ||||| ||||| ||||    
T  4328632 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 4328534  T
Q  267 aatcaaaattacatcacctccctgctggaacgatactttt 306  Q
    ||||| ||||||| || ||||||| || ||| ||||||||    
T  4328533 aatcacaattacaacaactccctgttgaaacaatactttt 4328494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 8780078 - 8779901
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||| ||| ||  | |||||||||| ||| |||||||||| | |||||| |||| | ||||||  ||| ||||||| ||| |    
T  8780078 atcaaccatgagaataggcgtggttgctagagaaacacactcaatgacttcgagagaagctttgatacgcttaatagaaacttgtctttagaaagtaggt 8779979  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
      |||||||  ||||||| ||| |||| | ||||||| | ||||| ||||||| |||||||||||||| || |||||||    
T  8779978 caaacataaagtttaggt-ttagggtttgtttgtgaagggtttgttattatgatgaaccaataatcccaaggcgctttt 8779901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 1864763 - 1864822
Alignment:
Q  4 tttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatt 63  Q
    |||||||||| |||| |||||||||||||||||||| |||||| ||||||||||| ||||    
T  1864763 tttcaataacaatcaaccatgagaataggcgtgatttttattgaaacacactcatggatt 1864822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 8786917 - 8786740
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| ||| |||||||||| | |||||| |||| | ||||||  ||| ||||||| ||| |    
T  8786917 atcaaccatgagaataggcgtggttgctagaggaacacactcaatgacttcgagagaagctttgatacgcttaatagaaacttgtctttagaaagtaggt 8786818  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
      || ||||  ||||||| ||| |||| | ||||||| | ||||| ||||||| |||||||||||| | || |||||||    
T  8786817 caaatataaagtttaggt-ttagggtttgtttgtgaagggtttgttattatgatgaaccaataatctcaaggcgctttt 8786740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 3194383 - 3194324
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattga 61  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||| || ||| |||||||    
T  3194383 ggtttcaataacaatcaaccatgagaataggcgtggttgttattgaaatacattcattga 3194324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 4541750 - 4541816
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaatttt 205  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| || ||||||||||||||| ||||    
T  4541750 ttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaaggcgctttttattattattttt 4541816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 2325345 - 2325284
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| || ||||||||| || ||||||||||||||||| | |||||||||||||    
T  2325345 ttggtttgtgaaggacttgtcattaggatgaaccaataatcccgaggctctttttattatta 2325284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 33610177 - 33610270
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa 108  Q
    |||| ||||||||||||| ||| ||| ||  |||||||||||| ||| |||||||||| | |||||| |||| ||||||||  ||| |||||||    
T  33610177 atcaaccatgagaataggtgtggttgctagaggaacacactcactgacttcgagagaagctttgatatgcttaagagaaacttgtctttagaaa 33610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 1614498 - 1614557
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattat 198  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| |  | |||||||||||    
T  1614498 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaatgctctttttattat 1614557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 19514994 - 19514901
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa 108  Q
    |||| ||||||||||||||||| ||| ||  |||||||||| | |||||| |||||||||  |||||  ||| ||||||||  ||| |||||||    
T  19514994 atcaaccatgagaataggcgtggttgctagaggaacacactaaatgattttgagagaaactgtgatacacttaagagaaacttgtcattagaaa 19514901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 32796207 - 32795899
Alignment:
Q  3 gtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcct 102  Q
    |||| ||||||||||| |||||| |||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||| ||| |    
T  32796207 gttttaataacgatcaaccatgataataggcgtggttgttattgaaacacactcattgattacgagagaaactttgatatgctttagagaaaccggtctt 32796108  T
Q  103 tagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaat 202  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32796107 tagaaatagatttaacataagatttaggtattagggttggattgtgaaagatttgtcattatgacgaaccaataatcccgagacgctttttattattaat 32796008  T
Q  203 ttt-cattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgata 301  Q
    |||  ||  |||| |||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||| || |||| || |||||| |||    
T  32796007 tttgtatcgatcataatccaaacttttcaaactttaatctttcagctaatcaccattaaaaagagaatcataattacaacaactccttgttggaacaata 32795908  T
Q  302 ctttttact 310  Q
     ||||||||    
T  32795907 ttttttact 32795899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 13168757 - 13169061
Alignment:
Q  4 tttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcctt 103  Q
    |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||  || ||    
T  13168757 tttcaataacaatcaaccatgagaataggcgtggttgttattgaaacacactcgttgatttcgagagaaaccttgataggctttagagaaaccgctcttt 13168856  T
Q  104 agaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaatt 203  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||  ||||||||||||| ||  | |||||||| |||||||    
T  13168857 agaaatagatttaacgtaagatttaggtattaagtttggattgtgaaagatttctcattatggcgaaccaataatcctgatgcactttttatcattaatt 13168956  T
Q  204 ttcattaatc-aaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgatac 302  Q
    | ||| |||| ||||||||| ||||| || |||||| ||||||  || |||   ||||| ||||||||||||||||| || |||  || |||||||||||    
T  13168957 tacatcaatcaaaaatcaaaccttttaaacctttaaactttcagttaatcatggttaaaaagagaatcaaaattacaacaactctatgttggaacgatac 13169056  T
Q  303 ttttt 307  Q
    |||||    
T  13169057 ttttt 13169061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 17522060 - 17521866
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||| || || |||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||||||||||| |||     
T  17522060 ggtttcaataatgaccaaccatgagaataggcgtgatttttattgaaacacactcattgattccgagaggaaccttgatacgctttagagaaaccggtct 17521961  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatta 197  Q
    ||||||||| |||||||||||||||||| || || | |||||||||||||||||||||||||||| ||| |||||||||||||   ||||||||||    
T  17521960 ttagaaatatatttaacataagatttagata-taggtttggattgtgaaagatttgtcattatgatgaatcaataatcccgaggtactttttatta 17521866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 9414768 - 9414933
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | |||| ||||||| |||     
T  9414768 ggtttcaataacgatcaaccatgataataggcgtggttgttattgaaacacactcatt-atttcgagagaaaccttgatatgatttacagaaaccggtct 9414866  T
Q  102 ttagaaatagatttaacataagatttaggtattat--ggttggattgtgaaagatttgtcattatga 166  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||    
T  9414867 ttagaaatagatttaacataatatttaggtattatagggttggattgtgaaaggtttgtcattatga 9414933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 23639543 - 23639349
Alignment:
Q  4 tttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcctt 103  Q
    |||||||||| |||| |||||||||||||||||||| |||||| |||| |||||| |||| |||||| |||||||| |  | ||||||||||  ||| ||    
T  23639543 tttcaataacaatcaaccatgagaataggcgtgattattattgaaacatactcatggattccgagaggaaccttgaaatacattagagaaacttgtcttt 23639444  T
Q  104 agaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||  ||||||||||||||||||| || || | |||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  23639443 agaaacggatttaacataagatttagata-taagtttggattgtgagtgatttgtcattatgatgaaccaataatcccgatacgctttttattatt 23639349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 20218108 - 20217924
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||| ||||||||||||| ||| ||  |||||||||||| |||||||||||||||| |||||| |||| ||||||||  ||| ||||||| ||| |    
T  20218108 atcaaccacgagaataggcgtggttgctagaggaacacactcaatgatttcgagagaaactttgatacgcttaagagaaacttgtcattagaaagtaggt 20218009  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
      || ||||  ||||||| ||| |||| | ||||||| | ||||| ||||||| |||||||||||||| |||||| ||||||||||    
T  20218008 caaatataaagtttaggt-ttagggtttgtttgtgaagggtttgttattatgatgaaccaataatcccaagacgccttttattatt 20217924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 22112133 - 22111949
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||| ||||||||||||| ||| ||  |||||||||||| |||||||||||||||| |||||| |||| ||||||||  ||| ||||||| ||| |    
T  22112133 atcaaccacgagaataggcgtggttgctagaggaacacactcaatgatttcgagagaaactttgatacgcttaagagaaacttgtcattagaaagtaggt 22112034  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
      || ||||  ||||||| ||| |||| | ||||||| | ||||| ||||||| |||||||||||||| |||||| ||||||||||    
T  22112033 caaatataaagtttaggt-ttagggtttgtttgtgaagggtttgttattatgatgaaccaataatcccaagacgccttttattatt 22111949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 26018409 - 26018593
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||||||||| ||| ||  |||||||||||| |||||| ||||||||| |||||| |||| ||||||||  ||| ||||||    
T  26018409 aataacaatcaaccatgagaataggcgtggttgctagaggaacacactcaatgattttgagagaaactttgatacgcttaagagaaacttgtctttagaa 26018508  T
Q  108 a-tagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
    | ||| |  || ||||  ||||||| ||| |||| | ||||||| || |||||| ||||| |||||||||||||| || |||||||    
T  26018509 agtaggtccaatataaagtttaggt-ttagggtttgtttgtgaaggaattgtcactatgacgaaccaataatcccaaggcgctttt 26018593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 26139113 - 26139286
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||||||||| ||| ||  |||||||||||| |||||| ||||||||| |||||| |||| ||||||||  ||| ||||||    
T  26139113 aataacaatcaaccatgagaataggcgtggttgctagaggaacacactcaatgattttgagagaaactttgatacgcttaagagaaacttgtctttagaa 26139212  T
Q  108 a-tagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    | ||| |  || ||||  ||||||| ||| |||| | ||||||| || |||||| ||||| ||||||||||||||    
T  26139213 agtaggtccaatataaagtttaggt-ttagggtttgtttgtgaaggaattgtcactatgacgaaccaataatccc 26139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 26157782 - 26157955
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||||||||| ||| ||  |||||||||||| |||||| ||||||||| |||||| |||| ||||||||  ||| ||||||    
T  26157782 aataacaatcaaccatgagaataggcgtggttgctagaggaacacactcaatgattttgagagaaactttgatacgcttaagagaaacttgtctttagaa 26157881  T
Q  108 a-tagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    | ||| |  || ||||  ||||||| ||| |||| | ||||||| || |||||| ||||| ||||||||||||||    
T  26157882 agtaggtccaatataaagtttaggt-ttagggtttgtttgtgaaggaattgtcactatgacgaaccaataatccc 26157955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 25508040 - 25508224
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||| | ||||||| ||  |||||||||||| |||||| ||||||||| |||||| |||| ||||||||  ||| ||||||    
T  25508040 aataacaatcaaccatgagaataagagtgattgctagaggaacacactcaatgatttagagagaaactttgatacgcttaagagaaacttgtctttagaa 25508139  T
Q  108 a-tagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
    | ||| |  || ||||  || |||| ||| |||| | ||||||| || |||||| ||||| |||||||||||||| ||||||||||    
T  25508140 agtaggtccaatataaagttaaggt-ttagggtttgtttgtgaaggaattgtcactatgaggaaccaataatcccaagacgctttt 25508224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 24545254 - 24545069
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||||||| ||  |||||||||||| ||||||||||| |||| || ||| |||| ||||||||  ||| ||||||| ||| |    
T  24545254 atcaaccatgagaataggcgtgattgctagaggaacacactcaatgatttcgagaaaaacttttatacgcttaagagaaactcgtctttagaaagtaggt 24545155  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
      || ||||  ||||||| |||  ||| | ||||||| |  ||||||||| || |||||||| ||| | |||| |||||||||||||    
T  24545154 ccaatataaagtttaggt-ttagagtttgtttgtgaaggggttgtcattaagatgaaccaatgatcacaagactctttttattatta 24545069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 29254441 - 29254534
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa 108  Q
    |||| |||||| |||||||||| ||| ||  |||||||||||| |||||||||||||||| |||||| |||| ||||||||  ||| |||||||    
T  29254441 atcaaccatgaaaataggcgtggttgctagaggaacacactcaatgatttcgagagaaactttgatacgcttaagagaaacttgtctttagaaa 29254534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 34108596 - 34108484
Alignment:
Q  86 ttagagaaaccagtccttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgaga 185  Q
    ||||||||||  ||| |||||||  ||||||| ||||||||||| ||| | | ||||||||| |  ||||||||||||||| |||||||||||||||||     
T  34108596 ttagagaaacttgtctttagaaacggatttaatataagatttagatat-aggtttggattgtaagtgatttgtcattatgatgaaccaataatcccgagg 34108498  T
Q  186 cgctttttattatt 199  Q
    |  |||||||||||    
T  34108497 cattttttattatt 34108484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 4741446 - 4741534
Alignment:
Q  20 ccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa 108  Q
    ||||||||||||| ||| ||| ||  |||||||||||| ||||||| ||| |||| ||||||||||| ||||||||  ||| |||||||    
T  4741446 ccatgagaataggtgtggttgctagaggaacacactcaatgatttcaagataaactttgataggcttaagagaaacttgtctttagaaa 4741534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 19695998 - 19696054
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||| |||||||||  |||| |||||||||||||| ||||||||||||||||||    
T  19695998 ttgtgaaggatttgtcaccatgacgaaccaataatcccaagacgctttttattatta 19696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 19994055 - 19994135
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaac 95  Q
    |||| |||||||||||||| || ||| ||  |||||||||||| |||||||| ||||||| |||||| |||| ||||||||    
T  19994055 atcaaccatgagaataggcatggttgctacaggaacacactcaatgatttcgcgagaaactttgatacgcttaagagaaac 19994135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 32545154 - 32545221
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacg-ctttttattattaatttt 205  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| || || ||||||||||||| ||||    
T  32545154 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggcgcctttttattattattttt 32545221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 17793481 - 17793421
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| || ||||||||||||||    
T  17793481 ttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaaggcgctttttattatt 17793421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 25785885 - 25785831
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||| ||||||||||||||| |||||||||||||| |  | |||||||||||||    
T  25785885 gtgaaggatttgtcattatgatgaaccaataatcccaatgctctttttattatta 25785831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 26822439 - 26822505
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaatttt 205  Q
    |||| ||||||| | |||||||  |||| |||||||||||||| || ||||||||||||||| ||||    
T  26822439 ttggtttgtgaagggtttgtcaccatgacgaaccaataatcccaaggcgctttttattattactttt 26822505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 15172806 - 15172867
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| |  |||||||||||||||    
T  15172806 ttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaaagcgctttttattatta 15172867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 19569676 - 19569615
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||||| || |||||||||||||| || | | |||||||||||    
T  19569676 ttggtttgtgaaggatttgtcattaggatgaaccaataatcccaaggctccttttattatta 19569615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 22600858 - 22600797
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| |  | |||||||||||||    
T  22600858 ttggtttgtgaatggtttgtcattatgatgaaccaataatcccaaagctctttttattatta 22600797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 28080003 - 28079942
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||| |||||| |||||||||||||  || | |||||||||||||    
T  28080003 ttggtttgtgaaggatttgtcgttatgatgaaccaataatccgaaggctctttttattatta 28079942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 29094157 - 29094186
Alignment:
Q  170 accaataatcccgagacgctttttattatt 199  Q
    ||||||||||||||||||||||||||||||    
T  29094157 accaataatcccgagacgctttttattatt 29094186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 12659950 - 12659890
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| ||||||| |||||||||  |||| |||||||||||||  |||| ||||||||||||    
T  12659950 ttggtttgtgaaggatttgtcaccatgacgaaccaataatcctaagacactttttattatt 12659890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 19612239 - 19612179
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| ||||||| | |||||||| | || |||||||||||||| || ||||||||||||||    
T  19612239 ttggtttgtgaaggttttgtcatcaagatgaaccaataatcccaaggcgctttttattatt 19612179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 23346683 - 23346623
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| ||||||| |||||||||  |||| |||||| ||||||| || ||||||||||||||    
T  23346683 ttggtttgtgaaggatttgtcaccatgacgaaccagtaatcccaaggcgctttttattatt 23346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 24018301 - 24017996
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||| ||| | |||     
T  24018301 ggtttcaataacgatcaaccatgagaataggtgtggttgttattgaaacacactcattgatttcgagagaaactttgatatgctttagaaaaatcggtct 24018202  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaa 201  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||  |    
T  24018201 ttagaaatagatttaacataggatttaggtattaggtttggattgtgaaagatttatcattatgacgaaccaataatcccgaggcgttttttattatata 24018102  T
Q  202 ttttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgata 301  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||   ||||||| ||||||| | || ||||||| |||||| |||    
T  24018101 ttttcataaatcaaaatcaaaacttttcaaactttaatctttcagctaatcaccatta---agagaataaaaattaaaacaactccctgttggaacaata 24018005  T
Q  302 ctttttact 310  Q
    |||||||||    
T  24018004 ctttttact 24017996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 22578026 - 22577725
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||| ||||| ||||||||||||| ||| ||||||||| |||||  ||||||||||||||||||||||||||  |||||||||||||| |||     
T  22578026 ggtttcaataaagatcaaccatgagaataggtgtggttgttattgaaacac--tcattgatttcgagagaaaccttgatctgctttagagaaaccggtct 22577929  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||||| |||||     
T  22577928 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgatgaaccaatgatcccgatgcgctttttactattat 22577829  T
Q  202 ttttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgata 301  Q
    ||||| | |||||||||| ||||||||| |||| ||||||||||  || ||||||||||| ||||||||||||||||| || |||| || ||||||||||    
T  22577828 ttttcttaaatcaaaatccaaacttttc-aactgtaatctttcagttaatcaccattaaaaagagaatcaaaattacaacaactccatgttggaacgata 22577730  T
Q  302 ctttt 306  Q
    |||||    
T  22577729 ctttt 22577725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 29952115 - 29952211
Alignment:
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||||||| | |||||||||||||||||  ||| | | |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29952115 ttagaaacaaatttaacataagatttaaatat-aggtttggattgtgagtgatttgtcattatgatgaaccaataatcccgagacgctttttattatt 29952211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 36129717 - 36129605
Alignment:
Q  86 ttagagaaaccagtccttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgaga 185  Q
    ||||||||||  ||| |||||||  ||||||||||||||||||  ||| | | |||||||||||  ||||||||||||||| |||||||||||| |||||    
T  36129717 ttagagaaacttgtctttagaaacggatttaacataagatttaaatat-aggtttggattgtgagtgatttgtcattatgacgaaccaataatcgcgaga 36129619  T
Q  186 cgctttttattatt 199  Q
    ||||||||||||||    
T  36129618 cgctttttattatt 36129605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 24365950 - 24365764
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||| | ||| ||| ||  |||||||||||| |||||||||||||||| |||||| |||| ||||||||  ||| ||||||| ||| |    
T  24365950 atcaaccatgagaataagggtggttgctagaggaacacactcaatgatttcgagagaaactttgatatgcttaagagaaacttgtctttagaaagtaggt 24365851  T
Q  114 ttaacataagatttaggtattatgg-ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
      || ||||  ||||||| ||| || |||| ||| ||||| |||||||| | || |||||||||||||| |||| |||||||||||||    
T  24365850 ccaatataaagtttaggt-ttagggtttggtttgggaaagttttgtcatcaagatgaaccaataatcccaagacactttttattatta 24365764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 31590116 - 31590019
Alignment:
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||||||  |||| |||||||||||||| ||| | | |||||||||||  ||||||||||||||| |||||||||||| |||| |||||||||||||||    
T  31590116 ttagaaacggattaaacataagatttagatat-aggtttggattgtgagtgatttgtcattatgatgaaccaataatctcgaggcgctttttattatta 31590019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 41653243 - 41653059
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||| ||| ||| ||  |||||||||||| ||||||||||| |||| |||||| |||| ||||||||  ||| ||||||| ||| |    
T  41653243 atcaaccatgagaataggtgtggttgctagaggaacacactcaatgatttcgagaaaaactttgatacgcttaagagaaacttgtctttagaaagtaggt 41653144  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
      || |||| | |||||| ||| |||| | ||||||| | |||||||||  || ||||||||||||||  |||||||||||||||||    
T  41653143 caaatataa-agttaggt-ttagggtttgtttgtgaagggtttgtcattgagatgaaccaataatcccaggacgctttttattatta 41653059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 29956874 - 29956986
Alignment:
Q  86 ttagagaaaccagtccttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgaga 185  Q
    ||||||||||  ||| ||||||| |||||||||||||||||||  ||| | | |||||||||||  ||| |||| |||||| ||||||||||| ||||||    
T  29956874 ttagagaaacttgtctttagaaacagatttaacataagatttaaatat-aggtttggattgtgagtgatctgtcgttatgatgaaccaataattccgaga 29956972  T
Q  186 cgctttttattatt 199  Q
     |||||||||||||    
T  29956973 tgctttttattatt 29956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 13004873 - 13005070
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||| ||||||||||| |||||| |||||||||||||||||| | ||||||||||| ||||  ||||| |||| ||| |  | ||| ||||||  |||     
T  13004873 ggtttaaataacgatcaaccatgataataggcgtgattgttatcgaaacacactcatggattctgagaggaaccatgaaatacattatagaaacttgtct 13004972  T
Q  102 ttagaaatagatttaacat--aagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| || |  ||||||||  || |  ||| || || | |||||||||||  ||||||||||||||| | ||||||||||||||| | ||||||||||||    
T  13004973 ttagtaacaagtttaacataaaaaaaatagata-taggtttggattgtgagtgatttgtcattatgatg-accaataatcccgaggcactttttattatt 13005070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 25592751 - 25592695
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcat 58  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||| | |||||||||    
T  25592751 ggtttcaataacaatcaaccatgagaataggcgtgattgttgttgaagcacactcat 25592695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 23797910 - 23797856
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  23797910 gtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattatta 23797856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 36684884 - 36684945
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||| |||||| |||||||||||||| || | |||||||||||||    
T  36684884 ttggtttgtgaaggatttgtcgttatgatgaaccaataatcccaaggctctttttattatta 36684945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 22558336 - 22558276
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| |||||||||||||||| |||||| ||| |||||||| | | |||||||||||||||    
T  22558336 ttggtttgtgaaagatttgtctttatgacgaatcaataatcgcaaaacgctttttattatt 22558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 19012512 - 19012457
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||||||| |||||||||  |||| |||||||||||||| |||| ||||||||||||    
T  19012512 ttgtgaaggatttgtcaccatgacgaaccaataatcccaagacactttttattatt 19012457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 25858219 - 25858140
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaa 94  Q
    |||| ||||||||||||| ||| ||| ||  |||||||||||| ||| |||||||||| | |||||| |||| |||||||    
T  25858219 atcaaccatgagaataggtgtggttgctagaggaacacactcaatgacttcgagagaagctttgatacgcttaagagaaa 25858140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 25803292 - 25803239
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  25803292 gtgaaggatttgtcattatgatgaaccaataatcccaag-ctctttttattatta 25803239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 23698439 - 23698383
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagaga 71  Q
    |||| ||||||||||||||||| ||| ||   ||||||||||| |||||||||||||    
T  23698439 atcaaccatgagaataggcgtggttgctagatgaacacactcaatgatttcgagaga 23698383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 24680521 - 24680816
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||     
T  24680521 ggtttcaataacgatcaaccatgagaatagacgtggttgttattgaaacacactcattgatttcgagagaaaccttgatatgctttagagaaatcggtct 24680620  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaa 201  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||     
T  24680621 ttagaaatagatttaacataagatttaggtattagggttggattgtgaaagatttgtcattatgacgaaccaataaccccgatgcgctttttattattat 24680720  T
Q  202 ttttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacgata 301  Q
    ||| | | ||||||||||         |||||||| || ||||| ||| ||||||||||| ||||||||| ||||||| || ||||||| ||||||||||    
T  24680721 tttacttcaatcaaaatc---------caaactttgatatttcagctaatcaccattaaaaagagaatcataattacaacaactccctgttggaacgata 24680811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 15421557 - 15421753
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||  || || |||| ||| |  | ||| ||||||  |||     
T  15421557 ggtttcaataacaatcaaccatgagaataggcgtgattgttattgaaacacactcatggattctgaaaggaaccatgaaatacattaaagaaacttgtct 15421656  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||||||| ||||||||  |||||   |  || || | ||||||||| |  ||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  15421657 ttagaaacagatttaatttaagaggaaaata-taggtttggattgtaagtgatttgtcattatgatgaaccaataatcccgatgcgctttttattatt 15421753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 2130406 - 2130602
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| ||||  || || |||| ||| |  | || |||||||  |||     
T  2130406 ggtttcaataacaatcaaccatgagaaaaggcgtgattgttattgaaacacactcatggattctgaaaggaaccatgaaatacatttgagaaacttgtct 2130505  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||||||| ||||||||  |||||   |  || |||| ||||||||| |  ||||||||||||||| | ||||||||||||||| |||||||| |||||    
T  2130506 ttagaaacagatttaatttaagaggaaaata-tatgtttggattgtaagtgatttgtcattatgatgtaccaataatcccgaggcgctttttgttatt 2130602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 17739289 - 17739350
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatt 63  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  17739289 ggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactcatggatt 17739350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 21925044 - 21925178
Alignment:
Q  66 gagagaaaccttgataggctttagagaaaccagtccttagaaatagat-ttaacataagatttaggtat-tatggttggattgtgaaagatttgtcatta 163  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| | | ||||||| |||   |||| ||   ||||||| |||||||||||||||||    
T  21925044 gagagaaaccttgataggctttagagaaactggtctttagaaataggtctaaacataaaatt--agtatatagatttggattatgaaagatttgtcatta 21925141  T
Q  164 tgaagaaccaataatcccgagacgcttt-ttattatt 199  Q
    ||| |||||||  |||||||||| |||| ||||||||    
T  21925142 tgatgaaccaacgatcccgagactctttattattatt 21925178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 1593758 - 1593819
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||| |||||| |||||||||||||| |||| |||||||||||||    
T  1593758 ttggtttgtgaaggatttgtcgttatgatgaaccaataatcccaagactctttttattatta 1593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 12060000 - 12059939
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||| |||||| |||||||||||| |||||| |||||||||||||    
T  12060000 ttggtttgtgaaggatttgtcgttatgatgaaccaataatctcgagactctttttattatta 12059939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 25727536 - 25727597
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  25727536 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattatta 25727597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 25735944 - 25736005
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  25735944 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattatta 25736005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 46502416 - 46502350
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaatttt 205  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||   | |||||||||||| ||||    
T  46502416 ttggattgtgaaatatttatcattatgatgaaccaataatcccgatgtgttttttattattactttt 46502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 20498139 - 20498200
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  ||||||||||||||||||| ||  ||||||||||||||    
T  20498139 ttggtttgtgaaggatttgtcaccatgaagaaccaataatcccaaggtgctttttattatta 20498200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 15346364 - 15346294
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgcttt--ttattattaattttca 207  Q
    |||| ||||||||||||||| |||| || |||||||||||||  ||| |||||  ||||||||||||||||    
T  15346364 ttggtttgtgaaagatttgttattaagatgaaccaataatccaaagaagcttttattattattaattttca 15346294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 16527290 - 16527247
Alignment:
Q  20 ccatgagaataggcgtgattgttattggaacacactcattgatt 63  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||    
T  16527290 ccatgagaataggtgtgattgttattgaaacacactcatggatt 16527247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 20860201 - 20860143
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatta 197  Q
    |||| ||||||| ||||||||| ||| | |||||||||||||| || ||||||||||||    
T  20860201 ttggtttgtgaaggatttgtcactatcacgaaccaataatcccaaggcgctttttatta 20860143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 30818701 - 30818643
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatta 197  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| ||||| |||||||||    
T  30818701 ttggtttgtgaatgatttgtcaccatgatgaaccaataatcccaagacgttttttatta 30818643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 19874638 - 19874577
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| |||||||  ||||||| |||||| |||||||||||||| || | |||||||||||||    
T  19874638 ttggtttgtgaagaatttgtcgttatgatgaaccaataatcccaaggctctttttattatta 19874577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 20448990 - 20449051
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| ||||||||||| || || |||||||||||||||    
T  20448990 ttggtttgtgaaggatttgtcaccatgacgaaccaataataccaaggcgctttttattatta 20449051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 20534756 - 20534817
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| ||||||||||| || || |||||||||||||||    
T  20534756 ttggtttgtgaaggatttgtcaccatgacgaaccaataataccaaggcgctttttattatta 20534817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 16527172 - 16527112
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatc-ccgagacgctttttattat 198  Q
    |||||||||||   ||||||||||| || |||||||||||| | |||||||||||||||||    
T  16527172 ttggattgtgagtaatttgtcattaggatgaaccaataatctctgagacgctttttattat 16527112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 30787 - 30516
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||     
T  30787 ggtttcaataacgatcaaccatgagaataggcgtggttgttattgaaacacactcattgatttcgagagaa-ccatgatatgctttagagaaaccggtct 30689  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaa 201  Q
    |||||| ||||||||||||||| ||||||| ||| |||||||||||||| ||||| ||||||||| |||||||||||| |||| || |||||| ||||||    
T  30688 ttagaa-tagatttaacataaggtttaggttttagggttggattgtgaaggatttttcattatgaggaaccaataatctcgaggcggtttttactattaa 30590  T
Q  202 ttttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaatt 276  Q
    | | | | ||||||||||  |||||||||||||||||||||| | ||| |||  ||| || ||||||||||||||    
T  30589 tctacttcaatcaaaatccgaacttttcaaactttaatcttttagctaatca-aattgaaaagagaatcaaaatt 30516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 31558 - 31465
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaac 95  Q
    ||||||| ||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||| ||||| ||||| |||||||    
T  31558 ggtttcagtaacgatcaaccatgagaataggcgtggttgtaattgaaacacactcattgatttggagagaaaccatgatatgctttggagaaac 31465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 13883170 - 13882865
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||| |||||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||     
T  13883170 ggtttcaacaacgatcaaccatgagaatatgcgtggttgttgttgaaacacactcattgatttcgagagaaaccttgatatgctttagagaaaccggtct 13883071  T
Q  102 ttagaaatagatttaacataagatttaggtat-tatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||||||||| | |||||||| |||   |||| || | |||||||||||||||||||||||||||| ||||||| |||||| || | |||||||||||||    
T  13883070 ttagaaataggtctaacataaaatt--agtatataggtttggattgtgaaagatttgtcattatgatgaaccaacaatcccaaggcactttttattatta 13882973  T
Q  201 attttcattaatc-aaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacga 299  Q
     |||  || |||| ||||||  ||||||| ||||  |||||||||| |||  ||||| |||| ||  ||||||||| ||| || ||||||| ||||| ||    
T  13882972 ttttcaatcaatcaaaaatcccaacttttaaaaccctaatctttcagctaaacaccactaaaaagcaaatcaaaatcacaacaactccctgttggaatga 13882873  T
Q  300 tacttttt 307  Q
    ||||||||    
T  13882872 tacttttt 13882865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 12347758 - 12348027
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||| || |||||||| ||||| ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  12347758 ggttttaacaacgatcaaccatgtgaataggcgtggtggttgttgaaacacactcattgatttcgagagaaaccttgataggctttagagaaaccggtct 12347857  T
Q  102 ttagaaatagatttaacataagatttaggtat-tatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||||||||| |  ||||||| |||   |||| || | |||||||||||||||||| ||||||||| |||||||  |||||||   ||||||||||||||    
T  12347858 ttagaaataggtcaaacataaaatt--agtatataggtttggattgtgaaagatttttcattatgatgaaccaacgatcccgatgtgctttttattatta 12347955  T
Q  201 attttcattaatcaaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaa 272  Q
     |||  || ||||||||||  ||||||  ||||  |||||||| | ||| ||   |||||| ||||||||||    
T  12347956 ttttcaatcaatcaaaatctcaactttgaaaaccctaatctttaagctaatcttaattaaaaagagaatcaa 12348027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 55268232 - 55268428
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||||| |||| |||||||| |||||||||||||||||| |||||| |||| ||||  || || |||| ||| |  | ||||||||||  |||     
T  55268232 ggtttcaataacaatcaaccatgagagtaggcgtgattgttattgaaacacaatcatggattctgaaaggaaccatgaaatacattagagaaacttgtct 55268331  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||||  |||||||  | |||   |  ||| | | |||||||||||   |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  55268332 ttagaaacggatttaattttagaggaaaatat-aggtttggattgtgagtaatttgtcattatgatgaaccaataattccgagacgctttttattatt 55268428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 4743242 - 4743437
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| ||||  || || |||| ||| |  | ||||||||||  |||     
T  4743242 ggtttcaataacaatcaaccatgagaataggcgtgattgctattgaaacacactcatggattctgaaaggaaccatgaaatacattagagaaacttgtct 4743341  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattat 198  Q
    |||||||   ||||||  |||||   |  || || | |||||||||||   ||||||||||| || ||| |||||||||||||||||||||||||||    
T  4743342 ttagaaacgaatttaatttaagaggaaaata-taggtttggattgtgagtaatttgtcattacgatgaagcaataatcccgagacgctttttattat 4743437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 24493403 - 24493459
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcat 58  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  24493403 ggtttcaataacaatcaaccatgagaataggcgtgattgttattgaaacacactcat 24493459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 16953429 - 16953368
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| |||| |||||||||||||    
T  16953429 ttggtttgtgaagggtttgtcattatgatgaaccaataatcccaagactctttttattatta 16953368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 18750077 - 18750119
Alignment:
Q  157 gtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  18750077 gtcattatgatgaaccaataatcccgggacgctttttattatt 18750119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 18750309 - 18750351
Alignment:
Q  157 gtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  18750309 gtcattatgatgaaccaataatcccgggacgctttttattatt 18750351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 13622877 - 13622938
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| || | ||||||| |||||    
T  13622877 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttactatta 13622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 17169334 - 17169409
Alignment:
Q  106 aaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||||||| ||||||||||||||||| |  || |||| ||||||| |||||||||  | || ||||||||||||||    
T  17169334 aaatagatctaacataagatttaggtttagtgtttggtttgtgaaggatttgtcaccaagatgaaccaataatccc 17169409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 17174894 - 17174969
Alignment:
Q  106 aaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||||||| ||||||||||||||||| |  || |||| ||||||| |||||||||  | || ||||||||||||||    
T  17174894 aaatagatctaacataagatttaggtttagtgtttggtttgtgaaggatttgtcaccaagatgaaccaataatccc 17174969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 8091397 - 8091343
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||| ||||||||||||||| |||||||||||||| |  | |||||||||||||    
T  8091397 gtgaaggatttgtcattatgatgaaccaataatcccaaagctctttttattatta 8091343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11902127 - 11902065
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacg-ctttttattatta 200  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| || || |||||||||||||    
T  11902127 ttggtttgtgaagggtttgtcattatgacgaaccaataatcccaaggcgcctttttattatta 11902065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 12345463 - 12345402
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| |  |||||||||||||||    
T  12345463 ttggtttgtgaaggatttgtcaccatgatgaaccaataatcccaatgcgctttttattatta 12345402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 53689896 - 53689839
Alignment:
Q  142 gattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||| || ||||||||||||| | || ||||||||  |||||||||||||||||||    
T  53689896 gattgtaaatgatttgtcattatcatgagccaataatttcgagacgctttttattatt 53689839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 39368 - 39288
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaac 95  Q
    |||| ||||||||||||||||| ||| ||  | |||||||||| ||| |||||||||| | |||||| |||  ||||||||    
T  39368 atcaaccatgagaataggcgtggttgctagagaaacacactcactgacttcgagagaagctttgatacgctaaagagaaac 39288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 11921951 - 11921891
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||| ||||||| | |||||||  |||| |||||||||||||| || ||||||||||||||    
T  11921951 ttggtttgtgaagggtttgtcaccatgacgaaccaataatcccaaggcgctttttattatt 11921891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 31469365 - 31469060
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||     
T  31469365 ggtttcaacaacgatcaaccatgagaataggcgtggttgttattgaaacacactcattgatttcaagagaaaccttgacaggctttagagaaaccagtct 31469266  T
Q  102 ttagaaatagatttaacataagatttaggtat-tatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||||||||| | |||| ||| |||   |||| || | |||||||||||| ||||||||||||||| || ||||  |||| ||| | |||||||||||||    
T  31469265 ttagaaataggtctaacttaaaatt--agtatataggtttggattgtgaatgatttgtcattatgatgagccaacgatcctgaggctctttttattatta 31469168  T
Q  201 attttcattaatc-aaaatcaaaacttttcaaactttaatctttcacctattcaccattaaatagagaatcaaaattacatcacctccctgctggaacga 299  Q
     |||  || |||| ||||||  ||||||| ||||  |||||||||| |||  | | | |||| ||| ||||||||| ||| || ||||||| ||||||||    
T  31469167 ttttcaatcaatcaaaaatcccaacttttaaaaccctaatctttcagctaaacgctactaaagagaaaatcaaaatcacaacaactccctgttggaacga 31469068  T
Q  300 tacttttt 307  Q
    ||||||||    
T  31469067 tacttttt 31469060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 15636458 - 15636632
Alignment:
Q  6 tcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttag 105  Q
    ||||||||| ||| ||||||||||||||||| ||||||||  ||||| |||||||||| |||||| |||||||||| || ||||| ||||  ||| || |    
T  15636458 tcaataacggtcaaccatgagaataggcgtggttgttattaaaacacgctcattgattccgagaggaaccttgatatgccttagaaaaacttgtctttgg 15636557  T
Q  106 aaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||||||| ||||||||||||||| || || | |||| ||||||||||||||||||||||  ||||||||||||||    
T  15636558 aaatagatctaacataagatttagata-taggtttgggttgtgaaagatttgtcattatgctgaaccaataatccc 15636632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 22725434 - 22725341
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa 108  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| |||||||||||||||| |||||| |||| ||||||||  ||| |||||||    
T  22725434 atcaaccatgagaataggcgtggttgctagaggaacacactcaatgatttcgagagaaactttgatacgcttaagagaaacttgtctttagaaa 22725341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 18571933 - 18571829
Alignment:
Q  86 ttagagaaaccagtccttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgaga 185  Q
    ||||||||||  ||| ||||||| ||||||||||||||||| |  ||| | | |||| |||| || |||||||| |||||| ||||||||||||||||||    
T  18571933 ttagagaaacttgtctttagaaagagatttaacataagattaaaatat-aggtttgggttgtcaatgatttgtctttatgacgaaccaataatcccgaga 18571835  T
Q  186 cgcttt 191  Q
    ||||||    
T  18571834 cgcttt 18571829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 15634671 - 15634746
Alignment:
Q  6 tcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgata 81  Q
    ||||||||||||| ||||||||||||||||| ||||||||  | |||||||||| ||| | |||| ||||||||||    
T  15634671 tcaataacgatcaaccatgagaataggcgtggttgttattaaaccacactcattaattccaagaggaaccttgata 15634746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 6570122 - 6570061
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||| |||||| |||||||||||||| |||| |||||||||||||    
T  6570122 ttggtttgtgaaggatttgtcgttatgatgaaccaataatcccaagactctttttattatta 6570061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 23456167 - 23456228
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| |||| |||||||||||||    
T  23456167 ttggtttgtgaagggtttgtcattatgatgaaccaataatcccaagactctttttattatta 23456228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 15760164 - 15760226
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacg-ctttttattatta 200  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  15760164 ttggtttgtgaagggtttgtcattatgacgaaccaataatcccaagacgcctttttattatta 15760226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 17127427 - 17127481
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||||||||||||||||| |||||||||||||| || | ||||||| |||||    
T  17127427 gtgaaagatttgtcattatgatgaaccaataatcccaaggctctttttactatta 17127481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 21140118 - 21140218
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||| ||||| ||  ||  |||||||||||| ||| |||||||||| | |||||| |||| ||||||||  ||| ||||||    
T  21140118 aataacaatcaaccatgagaataagcgtggtttctagaggaacacactcactgacttcgagagaagctttgatacgcttaagagaaacttgtctttagaa 21140217  T
Q  108 a 108  Q
    |    
T  21140218 a 21140218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 25431660 - 25431549
Alignment:
Q  86 ttagagaaaccagtccttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgaga 185  Q
    ||||||||||  ||| |||||||  |||||||| ||||||| |  ||| | | |||| ||||||| || ||||| ||| ||  |||||||||||||||||    
T  25431660 ttagagaaacttgtctttagaaacggatttaacctaagattaaaatat-aggtttgggttgtgaatgaattgtcgttacgactaaccaataatcccgaga 25431562  T
Q  186 cgctttttattat 198  Q
    |||||||||||||    
T  25431561 cgctttttattat 25431549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 24887522 - 24887581
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattat 198  Q
    |||| ||||||| || ||||| ||| ||  ||||||||||||||||||||||||||||||    
T  24887522 ttgggttgtgaatgaattgtcgttacgactaaccaataatcccgagacgctttttattat 24887581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 9318423 - 9318465
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||    
T  9318423 ttggtttgtgaaggatttgtcattatgatgaaccaataatccc 9318465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 23503684 - 23503745
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| ||||||||||||||  |||||||||||||| |  | |||||||||||||    
T  23503684 ttggtttgtgaaggatttgtcattatgctgaaccaataatcccaaagctctttttattatta 23503745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 14826914 - 14827036
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||  |||||||||||||||||     
T  14826914 ggtttcaataacgatcaaccatgagaataggcgtgattgttattgaaacacagtcattgatttcgagataaaccttaatatactttagagaaaccagtct 14827013  T
Q  102 ttagaaatagatttaacataaga 124  Q
    |||||||||||||||| ||||||    
T  14827014 ttagaaatagatttaatataaga 14827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 12697167 - 12696971
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| ||| || |||||||| |  | ||||||||||  |||     
T  12697167 ggtttcagtaacgatcaaccatgagaataagcgtgattgttattgaaacacactcatggattccgaaaggaaccttgaaatacattagagaaacttgtct 12697068  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||||||| | |||||||||||||||||| || || | | ||||||| |  | ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  12697067 ttagaaacaaatttaacataagatttagata-taggttaggattgtaagtgttttgtcattatgatgaaccgataatcccgagacgctttttattatt 12696971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 17576898 - 17576702
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||| ||||   |||| |||||||| |  | ||||||||||  |||     
T  17576898 ggtttcaatagcaatcaaccatgagaataggcgtgattgttattgaaacacactcatggattcttagaggaaccttgaaatacattagagaaacttgtct 17576799  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    |||||||  |||||||||||||| || | || || | ||||||||| |  ||||||||||||||| |||||||||||||||||  |||||||||||||    
T  17576798 ttagaaacggatttaacataagagttggata-taggtttggattgtaagtgatttgtcattatgatgaaccaataatcccgagttgctttttattatt 17576702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 17051191 - 17051377
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||| ||| ||| ||  |||||||||||| |||||||||||||||| ||||||  ||| ||||||||  ||| ||||||| ||| |    
T  17051191 atcaaccatgagaataggtgtggttgctagaggaacacactcaatgatttcgagagaaactttgatacacttaagagaaacttgtctttagaaagtaggt 17051290  T
Q  114 ttaacataagatttaggtattatgg-ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
       | ||||  ||||||| ||| || |||| ||||||| | |||||||| | || |||||||||||||| |||| |||||||||||||    
T  17051291 cctatataaagtttaggt-ttagggtttggtttgtgaaggttttgtcatcaagatgaaccaataatcccaagacactttttattatta 17051377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 2006546 - 2006600
Alignment:
Q  146 gtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  2006546 gtgaaagatttgtcattatgatgaaccaataatcccaagactctttttattatta 2006600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 22039294 - 22039473
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||| ||  ||  |||||||||||| ||| |||||||||| | |||||| |||| ||||||||  ||| ||||||| ||| |    
T  22039294 atcaaccatgagaataggcgtggtttctagaggaacacactcaatgacttcgagagaagctttgatacgcttaagagaaacttgtctttagaaagtaggt 22039393  T
Q  114 ttaacataagatttaggtattatgg-ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgcttttt 193  Q
      || ||||  ||||||| |||||| |||| ||||||| | |||||||| | || |||||||||||| | |||||||||||    
T  22039394 ccaatataaagtttaggt-ttatggtttggtttgtgaaggttttgtcatcaagatgaaccaataatcacaagacgcttttt 22039473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 17210073 - 17210227
Alignment:
Q  46 ggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagatttaacataagatttaggtattatggttggat 144  Q
    |||||||||||| |||||| ||||||||| |||||| |||| ||||||||  ||| ||||||| ||| |  || ||||  ||||||| ||| |||| | |    
T  17210073 ggaacacactcactgattttgagagaaactttgatacgcttaagagaaacttgtctttagaaagtaggtccaatataaagtttaggt-ttagggtttgtt 17210171  T
Q  145 tgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||||| | ||| |||||| || |||||||| ||| | || | |||||||||||||    
T  17210172 tgtgaagggtttatcattaagatgaaccaatgatctcaaggctctttttattatta 17210227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 2722539 - 2722581
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||    
T  2722539 ttggtttgtgaaaggtttgtcattatgacgaaccaataatccc 2722581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 11399465 - 11399507
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||    
T  11399465 ttggtttgtgaaggatttgtcattatgatgaaccaataatccc 11399507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 8685352 - 8685291
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| |||||||||||||  || |||||||||||||||    
T  8685352 ttggtttgtgaaggatttgtcaccatgacgaaccaataatccaaaggcgctttttattatta 8685291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 40847060 - 40847113
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
    |||| ||||||| | ||||||||||||| |||||||||||||| || |||||||    
T  40847060 ttggcttgtgaagggtttgtcattatgatgaaccaataatcccaaggcgctttt 40847113  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 17775372 - 17775424
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatt 196  Q
    |||||||||||||||||  |||| |||||||||||| | || |||||||||||    
T  17775372 ttgtgaaagatttgtcaccatgacgaaccaataatctcaaggcgctttttatt 17775424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 19076673 - 19076725
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatt 196  Q
    |||||||||||||||||  |||| |||||||||||| | || |||||||||||    
T  19076673 ttgtgaaagatttgtcaccatgacgaaccaataatctcaaggcgctttttatt 19076725  T

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Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 18091617 - 18091437
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| ||  ||||| |||||||| | || ||| ||||||  |||     
T  18091617 ggtttcaataacgatcaaccatgagaataggcgtgattgttattgaaacaaattcattgcttatgagaggaaccttgaaacgccttaaagaaacttgtct 18091518  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccga 183  Q
    | |||||  ||||||||||||||||||| || || | ||| |||||||  ||||||||||||||| ||||||||||||||||    
T  18091517 tcagaaacggatttaacataagatttagata-taggtttgaattgtgagtgatttgtcattatgatgaaccaataatcccga 18091437  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 35762551 - 35762617
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattattaatttt 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||| ||||    
T  35762551 ttggattgtgaaagatttgtcattatgatgaaccaataatcccgatgtgctttttattattactttt 35762617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 19222370 - 19222566
Alignment:
Q  2 ggtttcaataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtcc 101  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| ||||  || || |||| ||| |  | ||||||||||  |||     
T  19222370 ggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactcatggattctgaaaggaaccatgaaatacattagagaaacttgtct 19222469  T
Q  102 ttagaaatagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatt 199  Q
    ||| |||  |||||||  |||||   |  || || | |||||||||||   |||||||||||  | |||||||||||| |||||||||||||||||||    
T  19222470 ttataaacggatttaatttaagagcaaaata-taggtttggattgtgagtaatttgtcattacaatgaaccaataatcacgagacgctttttattatt 19222566  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 20724354 - 20724293
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  20724354 ttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattatta 20724293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 31757762 - 31757583
Alignment:
Q  20 ccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagatttaac 118  Q
    |||||||||||| |||| ||| ||  |||||||||||| ||| ||||| |||| | |||||| |||| ||||||||  ||| ||||||| ||| |  ||     
T  31757762 ccatgagaatagacgtggttgctagaggaacacactcagtgacttcgaaagaagctttgatacgcttaagagaaacttgtctttagaaagtagttcgaat 31757663  T
Q  119 ataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||  ||||||| ||| |||| | ||||| ||||||||| ||||||| |||||||||||| | |  |||||||||||||||    
T  31757662 ataaagtttaggt-ttagggtttgtttgtg-aagatttgttattatgatgaaccaataatctcaatgcgctttttattatta 31757583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 22949162 - 22949218
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||| ||||||||||||||| |||||||||||||| || | |||||||||||||    
T  22949162 ttgtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattatta 22949218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 22942945 - 22942991
Alignment:
Q  154 tttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||||    
T  22942945 tttgtcattatgatgaaccaataatcccaagactctttttattatta 22942991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 12322857 - 12322918
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| |||||||||||||| | |||||| |||||||||||||| || | |||||||||||||    
T  12322857 ttggtttgtgaaagatttgccgttatgatgaaccaataatcccaaggctctttttattatta 12322918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 16677661 - 16677722
Alignment:
Q  139 ttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattatta 200  Q
    |||| ||||||| |||||||||  |||| |||||||||||||| |||||| |||||||||||    
T  16677661 ttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaagacgccttttattatta 16677722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 34222597 - 34222557
Alignment:
Q  160 attatgaagaaccaataatcccgagacgctttttattatta 200  Q
    ||||||| |||||||||||||| |||| |||||||||||||    
T  34222597 attatgatgaaccaataatcccaagactctttttattatta 34222557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 3644 - 3841
Alignment:
Q  3 gtttcaataacgatcagccatgagaata---ggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagt 99  Q
    |||||||||  ||||| |||||||||||   |||||||||||||||| |||||||||||||||| |||||| |||||||| | || ||||||||||  ||    
T  3644 gtttcaatagtgatcaaccatgagaataataggcgtgattgttattgaaacacactcattgattccgagaggaaccttgaaacgccttagagaaacttgt 3743  T
Q  100 ccttagaaatagatttaacataagatttaggtattat-ggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttattat 198  Q
    | ||||||||||||||||||||||||| |   ||||| ||||  ||||| |  ||||||||||||||| ||||||| ||| |||||  ||||||||||||    
T  3744 ctttagaaatagatttaacataagattaa---attataggtttaattgtaagtgatttgtcattatgatgaaccaacaattccgaggtgctttttattat 3840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 6075 - 6175
Alignment:
Q  27 aataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaatagatttaacataagatt 126  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| | | |||||||||||| ||||||| ||||    
T  6075 aataggcgtggttgttattgaaacacactcattgaattcgagagaaaccttggtaggctttagagaaaccggactttagaaatagatctaacatacgatt 6174  T
Q  127 t 127  Q
    |    
T  6175 t 6175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 100664 - 100845
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| ||| |||||||||| | ||||||||||| ||||||||  ||| ||||||| ||| |    
T  100664 atcaaccatgagaataggcgtggttgctagaggaacacactcactgacttcgagagaagctttgataggcttaagagaaacttgtctttagaaagtaggt 100763  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttttatt 196  Q
      || ||||  ||||||| |||||||| | || |||| | |||||||||| || |||||||||||||| || | |||||||||    
T  100764 ccaatataaagtttaggt-ttatggtttggttttgaatggtttgtcattaagatgaaccaataatcccaaggctctttttatt 100845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 6343 - 6170
Alignment:
Q  8 aataacgatcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaa 107  Q
    |||||| |||| ||||||||||||||||| ||| ||  | |||| ||||| |||||| ||||||||| |||||| | || ||||||||  ||| ||||||    
T  6343 aataacaatcaaccatgagaataggcgtggttgctagagaaacaaactcaatgattttgagagaaactttgatacgtttaagagaaacttgtctttagaa 6244  T
Q  108 a-tagatttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatccc 181  Q
    | ||| || || ||||  ||||||| ||| |||| | ||||||| || |||||| ||||| ||||||||||||||    
T  6243 agtaggttcaatataaagtttaggt-ttagggtttgtttgtgaaggaattgtcactatgacgaaccaataatccc 6170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 8852 - 8675
Alignment:
Q  15 atcagccatgagaataggcgtgattgttattggaacacactcattgatttcgagagaaaccttgataggctttagagaaaccagtccttagaaa-tagat 113  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| ||| |||||||||| | |||||| |||| ||||||||  ||| ||||||| ||| |    
T  8852 atcaaccatgagaataggcgtggttgctagaggaacacactcaatgacttcgagagaagctttgatacgcttaagagaaacttgtctttagaaagtaggt 8753  T
Q  114 ttaacataagatttaggtattatggttggattgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
      || ||||  ||||||| ||| | || | || |||| | |||||||||| || |||||||||||||| || |||||||    
T  8752 ccaatataaagtttaggt-ttaggatttgtttttgaagggtttgtcattaagatgaaccaataatcccaaggcgctttt 8675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 82108 - 82060
Alignment:
Q  144 ttgtgaaagatttgtcattatgaagaaccaataatcccgagacgctttt 192  Q
    |||||||||||||||||| |||| |||||||||||||| | ||||||||    
T  82108 ttgtgaaagatttgtcatcatgacgaaccaataatcccaatacgctttt 82060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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