View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7883_low_16 (Length: 293)

Name: NF7883_low_16
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7883_low_16
NF7883_low_16
[»] chr8 (10 HSPs)
chr8 (17-142)||(5199375-5199500)
chr8 (21-174)||(5194515-5194668)
chr8 (50-172)||(5184234-5184355)
chr8 (213-293)||(5201184-5201264)
chr8 (40-145)||(5197761-5197864)
chr8 (40-156)||(5175669-5175785)
chr8 (71-173)||(6233281-6233383)
chr8 (224-268)||(11678299-11678343)
chr8 (40-139)||(5204845-5204939)
chr8 (40-77)||(1796684-1796721)
[»] chr7 (1 HSPs)
chr7 (40-172)||(5178138-5178271)
[»] chr6 (1 HSPs)
chr6 (227-289)||(2030908-2030970)
[»] chr3 (2 HSPs)
chr3 (248-293)||(22350419-22350464)
chr3 (248-293)||(47327731-47327776)
[»] chr1 (1 HSPs)
chr1 (237-290)||(38548141-38548194)
[»] chr2 (1 HSPs)
chr2 (237-293)||(38908125-38908181)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 5199375 - 5199500
Alignment:
Q  17 gacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacatta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199375 gacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacatta 5199474  T
Q  117 taagcataaatgaaatgtgtttgaca 142  Q
    |||||||||||||||||||| |||||    
T  5199475 taagcataaatgaaatgtgtatgaca 5199500  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 5194668 - 5194515
Alignment:
Q  21 tcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataag 120  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| |||||||||| ||||    
T  5194668 tcagaaaaggaagaaactcaccaatcttttgtttactcaactttgtcctgtttttagcaaataattcttactcaaagacccgattcaaacacattttaag 5194569  T
Q  121 cataaatgaaatgtgtttgacataaaaggaaaacatatatgacaagctttttat 174  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||| | ||||||    
T  5194568 cataaatgaaatgtgtttgatataaaaggaaaatatagatgacaaaccttttat 5194515  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 5184355 - 5184234
Alignment:
Q  50 tgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaagg 149  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||| ||||    
T  5184355 tgtttcctcaattctgtcctgtttttagcaattcattcttactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttgacatataagg 5184256  T
Q  150 aaaacatatatgacaagcttttt 172  Q
    |||| | | ||||||||||||||    
T  5184255 aaaa-acagatgacaagcttttt 5184234  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 5201184 - 5201264
Alignment:
Q  213 ttaaaaataaactcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttc 293  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5201184 ttaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattctcaaacccttacggattttc 5201264  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 5197761 - 5197864
Alignment:
Q  40 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 139  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||  ||||| |||||||||||||| |||||||||||| ||||||||||    
T  5197761 atcaatcttatgtttactcaattttgtcctgattttaccaattcattcttactc--agaacagatccaaacacattttaagcataaatgtaatgtgtttg 5197858  T
Q  140 acataa 145  Q
    ||||||    
T  5197859 acataa 5197864  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 5175785 - 5175669
Alignment:
Q  40 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 139  Q
    ||||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||||| ||||  |||||||| ||| ||||||||||||||||||     
T  5175785 atcaatcttctgtttgctcaattttgtccagtttttagaaattcattattactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttc 5175686  T
Q  140 acataaaaggaaaacat 156  Q
     ||||||||||||||||    
T  5175685 gcataaaaggaaaacat 5175669  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 6233383 - 6233281
Alignment:
Q  71 tttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaaggaaaacatatatgacaagcttt 170  Q
    ||||||| ||||| ||| |||||||||||| ||||| |||||||| |||||||||| || | |||||| |||||||||||||||||  |||||||| |||    
T  6233383 tttttaggaattctttcatactcaaagaacggatcctaacacattttaagcataaaagagacgtgtttaacataaaaggaaaacatcgatgacaagtttt 6233284  T
Q  171 tta 173  Q
    |||    
T  6233283 tta 6233281  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 11678343 - 11678299
Alignment:
Q  224 ctcatttctcaccttccaaatgacccaaattgcggcttgccaaat 268  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||    
T  11678343 ctcatttctcaccttccaaatcacccaaattacggcatgccaaat 11678299  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 5204939 - 5204845
Alignment:
Q  40 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 139  Q
    |||| |||||||||||||||| |||||||  ||||||| ||||| |||||||||| ||    ||||| ||||||||  || |||||||| ||||||||||    
T  5204939 atcattcttttgtttactcaa-tttgtccaatttttaggaattctttcttactcagag----gatcctaacacatttcaaacataaatgcaatgtgtttg 5204845  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 1796684 - 1796721
Alignment:
Q  40 atcaatcttttgtttactcaactttgtcctgtttttag 77  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  1796684 atcaatcttttgtttactcaattttgtactgtttttag 1796721  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 5178271 - 5178138
Alignment:
Q  40 atcaatcttttgtttactcaactttgtcctgtttttagcaatt-cattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgttt 138  Q
    |||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  5178271 atcaatctttcgtttattcaattttgtcctgtttttaacaatttcattcttacgcaaataacagatccaaacacattttaagcataaatgaaatgtgttt 5178172  T
Q  139 gacataaaaggaaaacatatatgacaagcttttt 172  Q
    ||||||||||||||||||| ||||||||||||||    
T  5178171 gacataaaaggaaaacatagatgacaagcttttt 5178138  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 2030908 - 2030970
Alignment:
Q  227 atttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggat 289  Q
    ||||||| |||||||||| |||||||| ||  |||||||||||||||||||||| || |||||    
T  2030908 atttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggat 2030970  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 22350464 - 22350419
Alignment:
Q  248 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttc 293  Q
    ||||||||| |||||||||||||||||||| || || |||||||||    
T  22350464 ccaaattgccgcttgccaaatcattctcaaccccttccggattttc 22350419  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 47327776 - 47327731
Alignment:
Q  248 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttc 293  Q
    ||||||||| |||||||||||||||||||| || || |||||||||    
T  47327776 ccaaattgccgcttgccaaatcattctcaaccccttccggattttc 47327731  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 38548194 - 38548141
Alignment:
Q  237 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggatt 290  Q
    ||||| || ||||||||||| |||||||||||||| |||||||| || ||||||    
T  38548194 ttccacataacccaaattgccgcttgccaaatcatcctcaaacctttccggatt 38548141  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 38908181 - 38908125
Alignment:
Q  237 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttc 293  Q
    |||||||| |||||||| || ||||||| |||||||||||| || || |||||||||    
T  38908181 ttccaaatcacccaaatcgctgcttgcctaatcattctcaaccccttccggattttc 38908125  T

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