View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_17 (Length: 281)
Name: NF7883_low_17
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 36893123 - 36893400
Alignment:
| Q |
1 |
ttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcga |
100 |
Q |
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| T |
36893123 |
ttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcga |
36893222 |
T |
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| Q |
101 |
atggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgat |
200 |
Q |
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| T |
36893223 |
atggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgat |
36893322 |
T |
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| Q |
201 |
caaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgctactcc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
36893323 |
caaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttatcggtctctgcttctcc |
36893400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 36883120 - 36883392
Alignment:
| Q |
1 |
ttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcga |
100 |
Q |
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| T |
36883120 |
ttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcag |
36883219 |
T |
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| Q |
101 |
atggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgat |
200 |
Q |
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| T |
36883220 |
ttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagccaagtacctggcggcacaaccgat |
36883319 |
T |
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| Q |
201 |
caaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
273 |
Q |
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| T |
36883320 |
gaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 244
Target Start/End: Original strand, 36903003 - 36903168
Alignment:
| Q |
76 |
aaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaag |
175 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| |
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| T |
36903003 |
aaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaag |
36903102 |
T |
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| Q |
176 |
cgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
244 |
Q |
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| T |
36903103 |
tgcagtacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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