View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_19 (Length: 258)
Name: NF7883_low_19
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 26943509 - 26943761
Alignment:
| Q |
1 |
tcagagtggtaacattgcaaatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttgcgaga |
100 |
Q |
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| T |
26943509 |
tcagagtggtaacattgcaaatgagaaacaccaacctttgacaaattccgattaactccatataacaattcaggcataaatgattgagcagtttgcgaga |
26943608 |
T |
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| Q |
101 |
gaggttcaccccatactgtgcacatgcaaaaggtttggaccatgacctgaagtaagagttaccactggtcttgagtttagttttccagatgtgcagaaag |
200 |
Q |
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| T |
26943609 |
gaggttcaccccatactgtgcacatgcaaaaggtttggaccatgacctgaagtaagagttaccactggtcttgagtttagttttccagatgtgcagaaag |
26943708 |
T |
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| Q |
201 |
caagtaatagaaggatcagtcatgaaacagaacgaagtaaaactaacttgatg |
253 |
Q |
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| T |
26943709 |
caagtaatagaaggatcagtcatgaaacagaacgaagtaaaactaacttgatg |
26943761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 26979304 - 26979200
Alignment:
| Q |
20 |
aatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccatactgt |
119 |
Q |
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| T |
26979304 |
aatgagtaacaccaacctttaccaaactccgatttactccgtacatcaactcaggcataaatgattgagcagtttgggagataggttcaccacatactgt |
26979205 |
T |
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| Q |
120 |
gcaca |
124 |
Q |
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| T |
26979204 |
gcaca |
26979200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 27002964 - 27003036
Alignment:
| Q |
50 |
gattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccatactgtgca |
122 |
Q |
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| T |
27002964 |
gatttactccatacatcaactcaggcataaatgattgagcagtttgggagagaggttcaccacatattgtgca |
27003036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 26988158 - 26988253
Alignment:
| Q |
20 |
aatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccata |
115 |
Q |
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|||||| | ||| |||||||| |||| | |||| |||||||| | ||| || ||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
26988158 |
aatgagtaccactaacctttgccaaactccgatttactccatacatcaactcaggcataaatgattgagcggtttgggagagaggttcaccacata |
26988253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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