View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_2 (Length: 661)
Name: NF7883_low_2
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 36590894 - 36591260
Alignment:
| Q |
12 |
agcagagagagaagaaaacatgatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctctgaatcttgtgca |
111 |
Q |
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| T |
36590894 |
agcaaagagagaagaaaacattatcatcccagaaataggcaaagcaaatccagttccagtctccaattgtgatgtgggtgcgatctccgaatcttgtgca |
36590993 |
T |
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| Q |
112 |
acaatgtttgtcacgcaaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgt |
211 |
Q |
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| T |
36590994 |
acaatgtttgtcacgcaaaacaagcctataaccattatcaacattaaaaactgaaatgcagaggcaccaaatgttgccatttccacaaaatatcttatgt |
36591093 |
T |
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| Q |
212 |
tatgtcactctaatagaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaatgagagagtcaagagttgagctatatatatagaatt |
311 |
Q |
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| T |
36591094 |
tatgtcactctaatagaaaatgggactgaaaaggttatattggttgggaaaatgaattgtacaataagagagtcaagagttgagctatatatatagaatt |
36591193 |
T |
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| Q |
312 |
ttgttaggtgtacgttattataagattaagaacattattttgaagttggtaagtggtacattaaaca |
378 |
Q |
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| T |
36591194 |
ttgttaggtgtacgttattataagattaagatcattattttgaagttggtaagtggtacattaaaca |
36591260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 405 - 651
Target Start/End: Original strand, 36591261 - 36591505
Alignment:
| Q |
405 |
gcttttggattaaggcttttatgttggattattattgctttttaggggtaatttagtttggaacgtaatatttaaatacacgttttgtccgaagcaataa |
504 |
Q |
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| T |
36591261 |
gcttttggattaaggcttttatgttggattattattgctttttaggggtaatttagtttggaacgtaatatttaaatacacgttttgtccgaagaaataa |
36591360 |
T |
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| Q |
505 |
tccaagcttgttttattaacatttaattttgatactccacaagaccattcaaatc---tagtaggtgtaaggtggcattgtgtactcaaagagcttctta |
601 |
Q |
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| T |
36591361 |
tccaagcttgttttattaac-----atattgatactccaaaagaccattcaaagctagtagtaggtgtaaggtggcattgtgtactcaaagagcttctta |
36591455 |
T |
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| Q |
602 |
cgttacactttagaggaacgatctagtgcctatatattactactaataat |
651 |
Q |
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| T |
36591456 |
cgttacactttagaggaacaatctaggccctatatattattactaataat |
36591505 |
T |
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