View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7883_low_20 (Length: 253)
Name: NF7883_low_20
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_20 |
 | |
|
| [»] chr3 (13 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 5299679 - 5299442
Alignment:
| Q |
16 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299679 |
gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct |
5299580 |
T |
|
| Q |
116 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5299579 |
acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaa |
5299480 |
T |
|
| Q |
216 |
agaattgctagagaagttagaatttctagcaaagcaaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5299479 |
agaattgctagagaagttagaatttctagcaaagcaaa |
5299442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 5251111 - 5250880
Alignment:
| Q |
22 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacac |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | ||| |
|
|
| T |
5251111 |
aagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcac |
5251012 |
T |
|
| Q |
122 |
caaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaatt |
221 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||||||| |||||||| |
|
|
| T |
5251011 |
cactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaatt |
5250912 |
T |
|
| Q |
222 |
gctagagaagttagaatttctagcaaagcaaa |
253 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| |
|
|
| T |
5250911 |
gctagagaagctagaatttcttgcaaagcaaa |
5250880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 5268980 - 5268767
Alignment:
| Q |
40 |
tacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaag |
139 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
5268980 |
tacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaac |
5268881 |
T |
|
| Q |
140 |
ttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatt |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5268880 |
ttgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatt |
5268781 |
T |
|
| Q |
240 |
tctagcaaagcaaa |
253 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
5268780 |
tcttgcaaaacaaa |
5268767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 4388151 - 4388255
Alignment:
| Q |
149 |
aaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatttctagcaaa |
248 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || | | |||| ||||| |||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
4388151 |
aaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaa |
4388250 |
T |
|
| Q |
249 |
gcaaa |
253 |
Q |
| |
|
||||| |
|
|
| T |
4388251 |
gcaaa |
4388255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 8455609 - 8455513
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8455609 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8455513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 6736945 - 6736849
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||| | ||||||||||| ||||| |||||||||||| |
|
|
| T |
6736945 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatt |
6736849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 8590684 - 8590588
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||| |||||| |||| |||| ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
8590684 |
agcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
8590588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6553512 - 6553608
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6553512 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6553608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 6479056 - 6479151
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagat |
107 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| | | |||||||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
6479056 |
agcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagat |
6479151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 6519246 - 6519332
Alignment:
| Q |
22 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
6519246 |
aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
6519332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 5281586 - 5281508
Alignment:
| Q |
32 |
aaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
110 |
Q |
| |
|
||||| |||| || ||||||||||||| |||||||||||||| ||| ||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
5281586 |
aaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgc |
5281508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 6948193 - 6948128
Alignment:
| Q |
43 |
gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6948193 |
gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatt |
6948128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 6837991 - 6838087
Alignment:
| Q |
13 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattg |
109 |
Q |
| |
|
|||||||||||| | ||||||| | | | |||||||||||| ||| | |||| ||||||| || ||||||| ||||||| | ||||||||||||| |
|
|
| T |
6837991 |
gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattg |
6838087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6551 - 6647
Alignment:
| Q |
12 |
agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
108 |
Q |
| |
|
|||||||| |||||| ||||||| | ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
6551 |
agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt |
6647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 6572403 - 6572500
Alignment:
| Q |
13 |
gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc |
110 |
Q |
| |
|
||||||||||| || ||||||| | || ||||||||| ||||||| | ||| ||||||| || ||||||| ||||||| | |||||||||||||| |
|
|
| T |
6572403 |
gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgc |
6572500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University