View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_24 (Length: 227)
Name: NF7883_low_24
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41830587 - 41830361
Alignment:
| Q |
1 |
acacaattttcaataccatgaatattgacacgttgcctatgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcaca |
100 |
Q |
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| T |
41830587 |
acacaattttcaataccatgaatattgacacgttgcctgtgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcaca |
41830488 |
T |
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| Q |
101 |
aaatcatgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacata |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41830487 |
aaatcacgaagttgaaattaaaggttcttatttagaaaatggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacata |
41830388 |
T |
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| Q |
201 |
gaaactaaccctaaccattctgattat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41830387 |
gaaactaaccctaaccattctgattat |
41830361 |
T |
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