View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_26 (Length: 222)
Name: NF7883_low_26
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_26 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 5299334 - 5299146
Alignment:
| Q |
17 |
atatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
5299334 |
atatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgaccgtgtaccaataatcagcatagtgggtctag |
5299235 |
T |
|
| Q |
117 |
gtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5299234 |
gtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatacagaaacagtttgaactaaaagcctgggtctatgtt |
5299146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 5250772 - 5250584
Alignment:
| Q |
17 |
atatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctag |
116 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||| | |||||||| || |||||| | |||| ||| |||||||||||||||||| |||||||| | |
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| T |
5250772 |
atatatggtagagatggtgacaaggaggagttaattgattttttactgtctgacataaacagtggcaatcatgtaccaataatcagcatagtgggtctcg |
5250673 |
T |
|
| Q |
117 |
gtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtt |
205 |
Q |
| |
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|||||||||| || ||||| |||||||| |||| |||||| || ||| ||||||| | || |||||||| ||||| |||||||||||| |
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| T |
5250672 |
gtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgtt |
5250584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 5268659 - 5268519
Alignment:
| Q |
17 |
atatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagatgctggcgatcgtgtaccaataatcagcatggtgggtctag |
116 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| ||| |||||||| || |||||||| ||| | | |||||||||||||||||| |||||||| | |
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| T |
5268659 |
atatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaaccatgtaccaataatcagcatagtgggtctcg |
5268560 |
T |
|
| Q |
117 |
gtggaatgggaaaaaccacccttgctcaacttgtgtacaat |
157 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||| |
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| T |
5268559 |
gtggaatgggtaagaccacccttgctcaactcgtgtacaat |
5268519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 6519663 - 6519776
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| ||||||||||||||||||| ||| |||||| ||||||||| |||| || |||||||| |||| |
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| T |
6519663 |
ccaataatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaagcattttgaacttaaag |
6519762 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
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| |||||||||||| |
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|
| T |
6519763 |
catgggtctatgtt |
6519776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 6553939 - 6554052
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
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| T |
6553939 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaag |
6554038 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
|
| |||||||||||| |
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|
| T |
6554039 |
catgggtctatgtt |
6554052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 6479486 - 6479596
Alignment:
| Q |
95 |
ataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcct |
194 |
Q |
| |
|
||||||||||| || ||| |||| || ||||| ||||||||||||||| | ||||||||||| ||||||| ||| || |||| |||||||| ||||| | |
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| T |
6479486 |
ataatcagcatagttggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcat |
6479585 |
T |
|
| Q |
195 |
gggtctatgtt |
205 |
Q |
| |
|
||||||||||| |
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|
| T |
6479586 |
gggtctatgtt |
6479596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 6736518 - 6736405
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||| ||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
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| T |
6736518 |
ccaataattagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaag |
6736419 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
|
| |||||||||||| |
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|
| T |
6736418 |
catgggtctatgtt |
6736405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 8455182 - 8455069
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||||||||| || ||| |||| || ||||| ||||||||||||||| | |||||||||||| |||||| ||| || | || |||||||| |||| |
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| T |
8455182 |
ccaataatcagcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaag |
8455083 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
|
| |||||||||||| |
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|
| T |
8455082 |
catgggtctatgtt |
8455069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 4388435 - 4388503
Alignment:
| Q |
89 |
gtaccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaat |
157 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||| |
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|
| T |
4388435 |
gtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaat |
4388503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 6947797 - 6947725
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaaca |
164 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | |||||||||||| |||||| |
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|
| T |
6947797 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaaca |
6947725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 6448286 - 6448396
Alignment:
| Q |
95 |
ataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcct |
194 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| || ||||| ||||| | |||||||||||| |||||||||| || | || |||||||| ||| | | |
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|
| T |
6448286 |
ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt |
6448385 |
T |
|
| Q |
195 |
gggtctatgtt |
205 |
Q |
| |
|
||||||||||| |
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|
| T |
6448386 |
gggtctatgtt |
6448396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 8568464 - 8568562
Alignment:
| Q |
107 |
gtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagcctgggtctatgtt |
205 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||| |||||| |||||| || ||| ||| |||| || |||||||| ||||| |||||| ||||| |
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|
| T |
8568464 |
gtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtccatgtt |
8568562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 8590257 - 8590144
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||||||||| || ||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| | | || ||||| || |||| |
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|
| T |
8590257 |
ccaataatcagcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaag |
8590158 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
8590157 |
catgggtctatgtt |
8590144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 6978 - 7091
Alignment:
| Q |
92 |
ccaataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaag |
191 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||||| ||||||||||||||| | ||||||||||| |||||| ||| |||| || |||||||| |||| |
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|
| T |
6978 |
ccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaagaagcattttgaacttaaag |
7077 |
T |
|
| Q |
192 |
cctgggtctatgtt |
205 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
7078 |
catgggtctatgtt |
7091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 6572800 - 6572911
Alignment:
| Q |
93 |
caataatcagcatggtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatgcagaaacagtttgaactaaaagc |
192 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||| || |||||||||||||| ||||| |||||| || | | |||| ||||||||||||| || ||||| |
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|
| T |
6572800 |
caataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatggagaaacagtttgaccttaaagc |
6572899 |
T |
|
| Q |
193 |
ctgggtctatgt |
204 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6572900 |
ttgggtccatgt |
6572911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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