View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_4 (Length: 545)
Name: NF7883_low_4
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_4 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 35379471 - 35379040
Alignment:
| Q |
10 |
tagatatgtatttttcttcaataattaacaaatttaaaacnnnnnnnnaactagttctgttgatctcgaaacagttgattctcccaaacaatcaggggcc |
109 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379471 |
tagatatatatttttcttcaataattaacaaatttaaaacttttttttaactagttctgttgatctcgaaacagttgattctcccaaacaatcaggggcc |
35379372 |
T |
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| Q |
110 |
tcctctagcttgttttacctccaacttatatatccataaattttcaggttaaaaaacgtgagtgtttttggggttaaaaaacgtgtgtatttccattagt |
209 |
Q |
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| T |
35379371 |
tcctctagcttgttttacctccaacttttatatccataaattttcgggttaaaaaacgtgagtatttttggggttaaaaaacgtgtgtatttccattagt |
35379272 |
T |
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| Q |
210 |
attttattcgtccctgtgaacatagtttagttgggacattgtagtatgtaaggaccgaggtttgaacatcggattctccacctattcatcttataagcgt |
309 |
Q |
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| T |
35379271 |
attttattcgtccctgtgaacatagtttagttgggacattgtagtatataaggaccgagatttgaacatcggattctccacctattcatcttataagcgt |
35379172 |
T |
|
| Q |
310 |
gaatttctagccactcgattatttaatcnnnnnnnnnnnnnctcatatcattgtttttacggatgtggatcctctctagcctttttagttcagccatctc |
409 |
Q |
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|||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35379171 |
gaatttctagccactcgactatttgaccaaaaaataaaaaactcatatcattgtttttacggatgtggatcctctctagcctttttagttcggccatctc |
35379072 |
T |
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| Q |
410 |
tcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
35379071 |
tcctttttcaatccaactgttgattgaaacat |
35379040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 457 - 542
Target Start/End: Complemental strand, 35379012 - 35378927
Alignment:
| Q |
457 |
ttagaaaatgattaggtaaaggcaggatagacagcatgagaggatccaaacccttgtttttaccatgttatatatattcttcgaca |
542 |
Q |
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| T |
35379012 |
ttagtaaatgattaggttaaggtaggatagacagcatgagaggatccaaacccttgtttttaccatgttatatattttctttgaca |
35378927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 30623223 - 30623287
Alignment:
| Q |
377 |
gatcctctctagcctttttagttcagccatctctcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
30623223 |
gatccactctagcctttttggttcagccatctctccttttttaattcaatagttgattgatacat |
30623287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 31858243 - 31858314
Alignment:
| Q |
370 |
ggatgtggatcctctctagcctttttagttcagccatctctcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
31858243 |
ggatgtggatcctctccagcctttttggttcagccttctctcctttttcaatctaacaattgattgatacat |
31858314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 36565175 - 36565248
Alignment:
| Q |
368 |
acggatgtggatcctctctagcctttttagttcagccatctctcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
36565175 |
acggatttggatcctctcctgcccttttggttcagccatctctcctttttcaatttaatggttgattgatacat |
36565248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 372108 - 372043
Alignment:
| Q |
370 |
ggatgtggatcctctctagcctttttagttcagccatctctcctttttcaatccaacggttgattg |
435 |
Q |
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| T |
372108 |
ggatttggatcctctctagcattttttgtgcagccccctctccttttttgatccaacggttgattg |
372043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 46864986 - 46864945
Alignment:
| Q |
400 |
cagccatctctcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
46864986 |
cagccatctctctttttccaatccaacggttgattgatacat |
46864945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 40084076 - 40084145
Alignment:
| Q |
372 |
atgtggatcctctctagcctttttagttcagccatctctcctttttcaatccaacggttgattgaaacat |
441 |
Q |
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| T |
40084076 |
atgtggattctctccggcccttttggttcaaccatatctcatttttcaattcaacggttgattgatacat |
40084145 |
T |
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