View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7883_low_5 (Length: 490)
Name: NF7883_low_5
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 20528691 - 20529165
Alignment:
| Q |
15 |
aagaaggtgaatccattgatgaatactttgcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttga |
114 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20528691 |
aagaaggcgaatccattgatgaatactttgcaataacactttctattgtaaacaagataacaactcgtggtgaaaagatggatcaaactctgcttgttga |
20528790 |
T |
|
| Q |
115 |
aaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20528791 |
aaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacatagt |
20528890 |
T |
|
| Q |
215 |
agtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggat |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20528891 |
agtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgggat |
20528990 |
T |
|
| Q |
315 |
atgggagagaaagagggcgttcaagcaaagaggaagatgtagaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatc |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20528991 |
atgggagaggaagagggcgttcaagcaaagaggaagatgtggaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatc |
20529090 |
T |
|
| Q |
415 |
agaatgaatgtcatctatgggaaacaaattcaaattatgctgaatttaaagaaggtgatgtccatctcattgctc |
489 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| | |||||||| |||| |
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|
| T |
20529091 |
agaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctc |
20529165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 29 - 472
Target Start/End: Original strand, 3036334 - 3036780
Alignment:
| Q |
29 |
attgatgaatactttgcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaaagatcttgagat |
128 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||| || ||||| ||| | | ||||||||||||||||||||| ||||||||||| ||||| |||||| |
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|
| T |
3036334 |
attgatgaatacttcgcaagaacgctttctattgctaataagatgacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagat |
3036433 |
T |
|
| Q |
129 |
ctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttca |
228 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||| | ||| ||||| | |||||||| ||||||||||| |
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|
| T |
3036434 |
ctttaacaagtaagttcaattatgtggtgtgctctattgaagaatctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttca |
3036533 |
T |
|
| Q |
229 |
agaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagagaaaga |
328 |
Q |
| |
|
||||| || ||| |||||||| || ||||||| |||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||| |||| |
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|
| T |
3036534 |
agaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaaga |
3036633 |
T |
|
| Q |
329 |
gggcgttcaag-caaagaggaagatgtagaggaagaattaac-aagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtc |
426 |
Q |
| |
|
|||| |||| | ||||||| |||| |||||||| ||| |||||| |||| || |||||||||||||||| |||||||||||||||||||||| |
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| T |
3036634 |
gggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtc |
3036733 |
T |
|
| Q |
427 |
atctatggg-aaacaaattcaaattatgctgaatttaaagaaggtga |
472 |
Q |
| |
|
||||||| ||| |||| ||||||||||| ||||| |||| ||||| |
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|
| T |
3036734 |
ccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtga |
3036780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 16863069 - 16863492
Alignment:
| Q |
17 |
gaaggtgaatccattgatgaatactttgcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaa |
116 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||| |||||||||||||||||||| ||||| | |||||| |||||||||||||| || |||||||||| |
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|
| T |
16863069 |
gaaggtgaaactattgataaatacttcgcaataactctttctattgcaaacaagatgacaacacatggtgagaagatggatcaaacacttgttgttgaaa |
16863168 |
T |
|
| Q |
117 |
agatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtag |
216 |
Q |
| |
|
|||| |||||||||||||||| || || ||||| ||| |||| || ||| | ||||| |||||||| || ||||| || ||||||||| | || || || |
|
|
| T |
16863169 |
agattctgagatctttaacaagtaaatttaattacgtgctgtgctcaattcatgaatcaaatgatgtaactacactctcaattaatgaacttcatagcag |
16863268 |
T |
|
| Q |
217 |
tttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatat |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| ||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
16863269 |
tttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatat |
16863368 |
T |
|
| Q |
317 |
gggagagaaagagggcgttcaag-caaagaggaagatgtagaggaagaattaacaa--gatttagttgaatgc-aataagtgtcacaagctaggacacta |
412 |
Q |
| |
|
|| |||| ||||||||||||| | |||||||| ||||||||||||||||||| || | ||||||||| | |||||||||||||| |||||||| |
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|
| T |
16863369 |
ggtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagt-gttgaatgctacaaagtgtcacaagctgggacacta |
16863467 |
T |
|
| Q |
413 |
tcagaatgaatgtcatctatgggaa |
437 |
Q |
| |
|
||| |||||||||| |||||||||| |
|
|
| T |
16863468 |
tcaaaatgaatgtcctctatgggaa |
16863492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 11356809 - 11356874
Alignment:
| Q |
167 |
gaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaa |
232 |
Q |
| |
|
||||||||||||||||| |||| | |||||| |||| ||||| | ||||||||||||||||||| |
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|
| T |
11356809 |
gaagaatccaatgatgttacaattttatccattgatgagttacatactagtttacttgttcaagaa |
11356874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 40613303 - 40612981
Alignment:
| Q |
15 |
aagaaggtgaatccattgatgaatactttgcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttga |
114 |
Q |
| |
|
||||||||||| |||| ||||| ||||| |||| ||| || ||||||||||| || || ||||| | |||||| |||||||||||||| ||||||||||| |
|
|
| T |
40613303 |
aagaaggtgaaaccatagatgattacttcgcaagaactctctctattgcaaataaaatgacaacacatggtgagaagatggatcaaacgctggttgttga |
40613204 |
T |
|
| Q |
115 |
aaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagt |
214 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||||||| || ||||||||||| || || || || ||||| || ||| |||| || |||||| |
|
|
| T |
40613203 |
aaagattttgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaacgacgtcactacactatcaattgatgagttgcagagt |
40613104 |
T |
|
| Q |
215 |
agtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| ||||||||||||||||| ||||||| |||||| | ||||| | |
|
|
| T |
40613103 |
agtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcgtggggt |
40613004 |
T |
|
| Q |
315 |
atgggagagaaagagggcgttca |
337 |
Q |
| |
|
|||| |||| |||||| |||||| |
|
|
| T |
40613003 |
atggtagaggaagaggacgttca |
40612981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 82 - 285
Target Start/End: Original strand, 20542086 - 20542289
Alignment:
| Q |
82 |
tggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
181 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
20542086 |
tggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaatgac |
20542185 |
T |
|
| Q |
182 |
gtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttga |
281 |
Q |
| |
|
|| || || || || ||| |||| || |||||||||||||||||||||||||||| |||||||||||| || ||||| |||| ||| |||||||||| |
|
|
| T |
20542186 |
gtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttga |
20542285 |
T |
|
| Q |
282 |
aggt |
285 |
Q |
| |
|
|||| |
|
|
| T |
20542286 |
aggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 20542372 - 20542419
Alignment:
| Q |
390 |
aagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaa |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
20542372 |
aagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaa |
20542419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 23940233 - 23940057
Alignment:
| Q |
105 |
tggttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatga |
204 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||| ||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || | ||||| |||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgactactttccccattgatga |
23940135 |
T |
|
| Q |
205 |
attacagagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaa |
282 |
Q |
| |
|
||| || || | || ||||| || ||||| ||||||| ||||| || ||| |||||||| ||| ||||||||||| |
|
|
| T |
23940134 |
attgcaaagcaacttgcttgtgcaggaacattacatgaactctcataatcaataaactgatagtgaacaagctttgaa |
23940057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 29945214 - 29945122
Alignment:
| Q |
143 |
ttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaa |
235 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| |||||||| |||||||| |||||| |||| || || |||||| | |||||||| |||||| |
|
|
| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgttacaacactctccattgatgagttgcaaagtagtcttcttgttcatgaacaa |
29945122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 10784346 - 10784254
Alignment:
| Q |
143 |
ttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaa |
235 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| ||| ||||||||||| |||| || ||||||||| | |||||||| |||||| |
|
|
| T |
10784346 |
ttcaattatgttgtttgctcaattgaagaatcaaatgatgttacagcactttccattgatgagttgcagagtagtcttcttgttcatgaacaa |
10784254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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