View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_6 (Length: 483)
Name: NF7883_low_6
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 42285876 - 42285410
Alignment:
| Q |
1 |
gacgaggagaagaaaacaatatacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagctaccctctcttgttatattcctcaatca |
100 |
Q |
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| T |
42285876 |
gacgaggagaagaaaacaatatacctagctatttatcttctggctattgttttcttgtgtgtaaaatttagctaccctctcttgttatattcctcaatca |
42285777 |
T |
|
| Q |
101 |
ttttgtgtcatatgaatatttaaataatttattttgctactttacatgcatgcttgtccacccgtatgcatatataacaatatctctttctatgtgtgtt |
200 |
Q |
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| T |
42285776 |
ttttgtgtcatatgaatatttaaataatttattttgctactttacatgcatgcttgtccacccgtatgcatatataacaatatctctttctatgtgtgtt |
42285677 |
T |
|
| Q |
201 |
ttctttcatttaatttgtattgaaaaattaattatgtgtggtaaaatttaaaagtttgcttgctagcaaagagtgatgaattggagggtaaaatatgtca |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285676 |
ttctttcatttaatttgtattggaaaattaattatgtgtggtaaaatttaaaagttttcttgctagcaaagagtgatgaattggagggtaaaatatgtca |
42285577 |
T |
|
| Q |
301 |
ctattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacccttgtagcccttacccctttctttatcactcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285576 |
ctattgtacatgctgctattgcacaggctactgtgtccttcgtagatgatggtttggggccactgacccttgtagcccttacccctttctttatcactcc |
42285477 |
T |
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| Q |
401 |
ttctcttatttcctatcttattaccaatattcacacagttatttggtaattcttagccctcaccttg |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
42285476 |
ttctcttatttcctatcttattaccaatattcacacagttatttggtaatttttagtcctcaccttg |
42285410 |
T |
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