View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7883_low_8 (Length: 459)
Name: NF7883_low_8
Description: NF7883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7883_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 5201241 - 5201670
Alignment:
| Q |
16 |
attctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaacc |
115 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5201241 |
attctcaaacccttacggattttcttattaatattacccatcgcccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaacc |
5201340 |
T |
|
| Q |
116 |
acaccatcaagttaagccaaatatttctagccatatcgcattggaggaaaatatgcgaagtagatttgggaacg-----acaccaaacacaattatggct |
210 |
Q |
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| T |
5201341 |
acaccatcaagttaagccaaatatttctagccatatcgcaatggaggaaaatatgcgaagtagattcgggaaccgtcgcacaccaaacacaattatggct |
5201440 |
T |
|
| Q |
211 |
aacatccatagataaacaactccttatctccaaattcaccctatttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaacc |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| | ||| ||||||||||||| |
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| T |
5201441 |
aacatccataggtaaacaactccttatctccaaattcaccctatttgaaatttggtctagcaaggtcttccacacaaaagcgctcatcttggttggaacc |
5201540 |
T |
|
| Q |
311 |
ccgaatttccaaatttgacggaacaccctcctttccccttccggcctaatctcctctcctatctctctcatatccaacctagcagacaaggacttcactg |
410 |
Q |
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||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| | |
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| T |
5201541 |
ccggattttcaaatttgacgaaacaccctcctttccccttccggcctaatctcctctcatatctctctcatatccaacttagcatacaaggacttcaccg |
5201640 |
T |
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| Q |
411 |
aaaaatttctatcatcctccaacttccaac |
440 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
5201641 |
aaaaatgtctatcatcctccaacttccaac |
5201670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 2030951 - 2031382
Alignment:
| Q |
16 |
attctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaacc |
115 |
Q |
| |
|
||||||||||| || ||||| |||||||||| | |||| | ||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
2030951 |
attctcaaacccttccggatcttcttattaagagcaccccccgcccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaacc |
2031050 |
T |
|
| Q |
116 |
acaccatcaagtta---agccaaatatttctagccatatcgcattggaggaaaatatgcgaagtagatttgggaacga-----caccaaacacaattatg |
207 |
Q |
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|| |||||| ||| || ||||||||||| |||||||| || |||||||||| ||| ||||| |||| ||| | | ||||||||| | | ||| |
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| T |
2031051 |
acttcatcaaattattaagtcaaatatttcttgccatatcacaatggaggaaaagatgtgaagtggattcgggtatcatcacacaccaaaca-attcatg |
2031149 |
T |
|
| Q |
208 |
gctaacatccatagataaacaactccttatctccaaattcaccctatttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttgga |
307 |
Q |
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| T |
2031150 |
actaacatccgttggtaaacaacttcttttctccaaattcacccgatttggaatccggtctagaagagccttccacataaaagcactcaccttagttgga |
2031249 |
T |
|
| Q |
308 |
accccgaatttccaaatttgacggaacaccctcctttccccttccggcctaatctcctctcctatctctctcatatccaacctagcagacaaggacttca |
407 |
Q |
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||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| | | | |||||||||||| |
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| T |
2031250 |
accccagacttccaaatttgacgaaacactctcctttccccttccggcctaatctcctctcctatctccctcctatccaactttgaatacaaggacttca |
2031349 |
T |
|
| Q |
408 |
ctgaaaaatttctatcatcctccaacttccaac |
440 |
Q |
| |
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| ||||| | ||||| |||||||||||||||| |
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| T |
2031350 |
ccgaaaaggtcctatcctcctccaacttccaac |
2031382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 36251197 - 36251044
Alignment:
| Q |
40 |
ttattaatattacccatcacccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatat |
139 |
Q |
| |
|
||||||| || |||| ||||||||| |||||| |||| | || || |||||||||||||||||| |||| ||||||| ||| ||||| | |||||||| |
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| T |
36251197 |
ttattaaaatgaccccccacccaacactcccaaaggacatacaaatttggtggcattacaaaattcaaatctaaccacaacattaagtttaaccaaatat |
36251098 |
T |
|
| Q |
140 |
ttctagccatatcgcattggaggaaaatatgcgaagtagatttgggaacgacac |
193 |
Q |
| |
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| | |||||||| || | || |||| |||||||| ||||| |||| |||||| |
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| T |
36251097 |
tcttcgccatatcacaaggaagaaaaagatgcgaagaagattcgggagcgacac |
36251044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 39844995 - 39844906
Alignment:
| Q |
60 |
ccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat |
149 |
Q |
| |
|
||||||||||||||| | | ||| || |||||||||||||||||| |||| ||||||| ||||| || | ||||| ||| |||||||| |
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| T |
39844995 |
ccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat |
39844906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 1547719 - 1547630
Alignment:
| Q |
60 |
ccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat |
149 |
Q |
| |
|
||||||||||||||| | | ||| || |||||||||||||||||| |||| ||||||| ||||| || | ||||| ||| |||||||| |
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| T |
1547719 |
ccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat |
1547630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 22350217 - 22350144
Alignment:
| Q |
236 |
atctccaaattcaccctatttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaac |
309 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| || |||||||||||||||| | ||||||| | |||||| |
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| T |
22350217 |
atctccaaattcaatctagttggaatgcggtctaaaaatgccttccacacaaaagcggtcaccttagatggaac |
22350144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 42774146 - 42774183
Alignment:
| Q |
317 |
ttccaaatttgacggaacaccctcctttccccttccgg |
354 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
42774146 |
ttccaaatatgacgaaacaccctcctttccccttccgg |
42774183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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