View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7884_high_1 (Length: 599)
Name: NF7884_high_1
Description: NF7884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7884_high_1 |
 | |
|
| [»] scaffold0210 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 2887266 - 2887850
Alignment:
| Q |
1 |
cttttggatctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887266 |
cttttggatctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgt |
2887365 |
T |
|
| Q |
101 |
gaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2887366 |
gaatggtctttcaaccgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggatta |
2887465 |
T |
|
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887466 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
2887565 |
T |
|
| Q |
301 |
tcgaagcttttgatgaggtaagaaatgatttgttggtaaaaaatgtgttttctttttcttccgcttttggactcgaaataacatacattatttattccag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2887566 |
tcgaagcttttgatgaggtaagaaatgatttgttggtaaaaaatgcgttttctttttcttcctcttttggactcgaaataacatacattatatattccag |
2887665 |
T |
|
| Q |
401 |
ttattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggatgcaacttat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887666 |
ttattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggatgcaacttat |
2887765 |
T |
|
| Q |
501 |
atttaatattacttttagacaaaataaataaattatagtggatagctataattctacttggaagattatcttctaatattttctg |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2887766 |
atttaatattacttttagacaaaataaataaattatagtggatagctataattctacttggaagattatcttctaatattttctg |
2887850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 2897081 - 2896593
Alignment:
| Q |
8 |
atctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2897081 |
atctgataaatggttgtagatgttcatcgaggaagtcatggaactagtggagctcaatccattgagaaactctttggttggtttgcctggtgtgaatggc |
2896982 |
T |
|
| Q |
108 |
ctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgcta |
207 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2896981 |
ctttcaactgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggattagatgcta |
2896882 |
T |
|
| Q |
208 |
gagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagc |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2896881 |
gagctgctgcaattgttatgcgaacagttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagc |
2896782 |
T |
|
| Q |
308 |
ttttgatgaggtaagaaatgatttgttggtaaaaaat-gtgttttctttttcttccgcttttggactcgaa-----ataacatacattatttattccagt |
401 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| |||||| | ||||||| || || ||| ||| ||| ||| || |||| || ||| |
|
|
| T |
2896781 |
ttttgatgaggtaagaaatgatt--ttgataaaaaatcatgttttatgattcttccttttctgtacttgaactgacctaatataaatgatttcttttagt |
2896684 |
T |
|
| Q |
402 |
tattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggatg |
492 |
Q |
| |
|
|| |||| ||||| ||||||||| |||||| ||||||||| || ||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2896683 |
tactcctaatgaagcgcggaggacaagaaacatatgttgggccattgggtcgtcattccaatcaattgatcaagtattttgaggttggatg |
2896593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 2877763 - 2878068
Alignment:
| Q |
21 |
ttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaac |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| || || |||| ||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2877763 |
ttgtagatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaac |
2877862 |
T |
|
| Q |
121 |
aacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaat |
220 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2877863 |
aacgcaagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaat |
2877962 |
T |
|
| Q |
221 |
tgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggta |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
2877963 |
tgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggta |
2878062 |
T |
|
| Q |
321 |
agaaat |
326 |
Q |
| |
|
|||||| |
|
|
| T |
2878063 |
agaaat |
2878068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 53668666 - 53668549
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || || ||||| || |||||| | ||||| ||||| ||||| ||||| |||||||| ||||| || | |
|
|
| T |
53668666 |
gatgctagagccgctgctattgtgatgcgaactgtgagaaacacagtagacacatggagaacggttgtgtgcacaattcaccaaccaagcattgatattt |
53668567 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
53668566 |
tttaagcttttgatgagg |
53668549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 491
Target Start/End: Original strand, 2878176 - 2878240
Alignment:
| Q |
427 |
agaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggat |
491 |
Q |
| |
|
||||||||||| ||| || | |||||| |||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2878176 |
agaaatatatgctgggccattaggtcgttattctaatcaattgatcaagtactttgaggttggat |
2878240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 35420893 - 35421009
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| || || ||||| || |||||||| ||||| ||| | ||||| ||||| |||||||| ||||| || | |
|
|
| T |
35420893 |
gatgctagagtcgctgctattgtgatgcgaaatgtgagaaacacagtagacacagggagaactgttctgtgcacaattcaccaaccaagcattgatattt |
35420992 |
T |
|
| Q |
301 |
tcgaagcttttgatgag |
317 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
35420993 |
tttaagcttttgatgag |
35421009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 51049755 - 51049808
Alignment:
| Q |
267 |
gtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggta |
320 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
51049755 |
gtttgcaccatacatcaaccaagtatcgatatatttgagacttttgatgaggta |
51049808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 44233879 - 44233574
Alignment:
| Q |
15 |
aaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaa |
114 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||| ||||||| |||||| | ||||||||||||||||||| |||||| |||| |
|
|
| T |
44233879 |
aaatggttgcagatgtttattgacgaagtcatggatctagtggagctgaactcattgaggaactctctagttggtttgcctggtgtgagtggtctctcaa |
44233780 |
T |
|
| Q |
115 |
ccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgc |
214 |
Q |
| |
|
| ||||| |||||||| || |||||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
44233779 |
ctgaacagcgcaagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctacttctggtttagatgctagagctgc |
44233680 |
T |
|
| Q |
215 |
tgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgat |
314 |
Q |
| |
|
||||||||||||| |||| || |||||||| || |||||||||||||||||||| || ||||| ||||| || || ||||||||||| ||||| |||||| |
|
|
| T |
44233679 |
tgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcagcctagcattgacatatttgaagcatttgat |
44233580 |
T |
|
| Q |
315 |
gaggta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
44233579 |
gaggta |
44233574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 44223057 - 44222752
Alignment:
| Q |
15 |
aaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaa |
114 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||| | ||||| |||||| | ||||||||||||||||||| |||||| |||| |
|
|
| T |
44223057 |
aaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaa |
44222958 |
T |
|
| Q |
115 |
ccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgc |
214 |
Q |
| |
|
| ||||| |||||||| || |||||||| || ||| | ||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||||||||| || |
|
|
| T |
44222957 |
ctgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggc |
44222858 |
T |
|
| Q |
215 |
tgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgat |
314 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||| |
|
|
| T |
44222857 |
tgcaattgttatgcgaactgtaaggaacacagtggacacgggaagaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgat |
44222758 |
T |
|
| Q |
315 |
gaggta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
44222757 |
gaggta |
44222752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 44210857 - 44210552
Alignment:
| Q |
15 |
aaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaa |
114 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| ||||| || |||||||| ||| | ||||| |||| | ||||||||||||||||| | |||||| |||| |
|
|
| T |
44210857 |
aaatgcttgcagatgtttattgaggaagtaatggatcttgtggagctgaactcgttgagggactccctcgttggtttgcctggtgttagtggtctctcaa |
44210758 |
T |
|
| Q |
115 |
ccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgc |
214 |
Q |
| |
|
| |||||||| || ||| | |||||||| |||||| ||||||| ||||| |||||||||||||||| ||| || || ||||| ||||||||||||||||| |
|
|
| T |
44210757 |
cggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaacttctggtttagatgctagagctgc |
44210658 |
T |
|
| Q |
215 |
tgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgat |
314 |
Q |
| |
|
||||||||||||| |||| || |||||||| || |||||||||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||| |
|
|
| T |
44210657 |
tgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgat |
44210558 |
T |
|
| Q |
315 |
gaggta |
320 |
Q |
| |
|
|||||| |
|
|
| T |
44210557 |
gaggta |
44210552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 491
Target Start/End: Complemental strand, 44233464 - 44233375
Alignment:
| Q |
402 |
tattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggat |
491 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
44233464 |
tattccttatgaaacgtggaggacaagaaatatatgttggaccattgggtcgtcattctactcatttgatcaagtattttgaggtaggat |
44233375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 402 - 512
Target Start/End: Complemental strand, 44222644 - 44222534
Alignment:
| Q |
402 |
tattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggttggatgcaacttata |
501 |
Q |
| |
|
||||||| ||||| || |||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||| |||| | |||| |
|
|
| T |
44222644 |
tattccttatgaagcgtggaggacaagaaatatatgttggaccactgggtcgtcattctactcatttgatcaagtatttcgaggtaggatcctactttag |
44222545 |
T |
|
| Q |
502 |
tttaatattac |
512 |
Q |
| |
|
||||||||||| |
|
|
| T |
44222544 |
tttaatattac |
44222534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 44210446 - 44210359
Alignment:
| Q |
399 |
agttattcctcatgaaacgcggaggagaagaaatatatgttggaccgctgggtcgtcattctagtcaattgatcaagtattttgaggt |
486 |
Q |
| |
|
|||||||||| |||||||| |||||| | ||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
44210446 |
agttattccttatgaaacgtggaggacaggaaatatatgttggaccattgggtcgtcattctactcatttgatcaagtatttcgaggt |
44210359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 43457131 - 43456962
Alignment:
| Q |
111 |
tcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagag |
210 |
Q |
| |
|
|||||||||||||| || |||||||| || || ||||| | | || ||||| || || |||||||||| ||| || || || || | ||||| |||| |
|
|
| T |
43457131 |
tcaaccgaacaacgaaaaaggctaacaatagcggttgagcttattgctaatccttcaatcattttcatggatgaaccaacttcaggtcttgatgcaagag |
43457032 |
T |
|
| Q |
211 |
ctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattca |
280 |
Q |
| |
|
|||| |||||||||||| | || || || ||||| |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
43457031 |
ctgcagcaattgttatgaggacagtgagaaacactgttgacactggaagaacagttgtctgcacaattca |
43456962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 108 - 326
Target Start/End: Complemental strand, 2160434 - 2160216
Alignment:
| Q |
108 |
ctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgcta |
207 |
Q |
| |
|
||||| ||||||||||||||||| ||||| || || |||||| | || || |||||||| ||||| ||||||| |||||| || ||||| | ||||||| |
|
|
| T |
2160434 |
ctttcgaccgaacaacgcaagagactaacgatcgcagttgaacttgtagcgaatccatcgataatattcatggatgagccaacctctggccttgatgcta |
2160335 |
T |
|
| Q |
208 |
gagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagc |
307 |
Q |
| |
|
|||| ||||||||||| ||| |||| || |||||||| |||||||||||| | || ||||||||||| || ||||| |||||||||||||||||||| || |
|
|
| T |
2160334 |
gagcagctgcaattgtaatgagaacagtgaggaacacagttgacacaggacgtactgttgtttgcacaatccatcagccaagtattgacatattcgacgc |
2160235 |
T |
|
| Q |
308 |
ttttgatgaggtaagaaat |
326 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2160234 |
ctttgatgaggtaacaaat |
2160216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 2148689 - 2148393
Alignment:
| Q |
25 |
agatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaacaacg |
124 |
Q |
| |
|
||||||| ||||||||||| ||||| || || ||||| ||| |||| ||| | | | ||||| ||||| || | ||||| |||||||||||||| || |
|
|
| T |
2148689 |
agatgtttattgaggaagttatggagcttgtagagcttaactcattaagagaagcacttgttggattgccaggcgaaaatggactttcaaccgaacagcg |
2148590 |
T |
|
| Q |
125 |
caagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgtt |
224 |
Q |
| |
|
|||||| || |||||||| |||||| | || || |||||||| ||||| ||||||| ||| || || ||||| | |||||| |||| ||||| ||||| |
|
|
| T |
2148589 |
caagagacttactattgcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctcgagcagctgcgattgta |
2148490 |
T |
|
| Q |
225 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggtaa |
321 |
Q |
| |
|
|||||||| || |||||||| || ||||||||| | || || || ||||| || ||||| || |||||||||||||| || | ||||||||||||| |
|
|
| T |
2148489 |
atgcgaacagtaaggaacactgtggacacaggacgtaccgtggtgtgcacgatccatcagccgagtattgacatatttgattcctttgatgaggtaa |
2148393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 126 - 321
Target Start/End: Original strand, 19543187 - 19543382
Alignment:
| Q |
126 |
aagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgtta |
225 |
Q |
| |
|
|||||||| || |||||||| ||||| || || || || ||||| || || |||| ||| || ||| |||| | |||||||||||||| ||| | |||| |
|
|
| T |
19543187 |
aagaggcttaccattgctgtagaattggttgcaaacccttccattatctttatggatgaaccaacgactggtcttgatgctagagctgcagcagtagtta |
19543286 |
T |
|
| Q |
226 |
tgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggtaa |
321 |
Q |
| |
|
|||| || ||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||||||| || || ||| |||||||||||||| |
|
|
| T |
19543287 |
tgcgtactgttagaaacacagttgatacagggagaactgttgtgtgcacaattcatcaaccaagtattgatatttttgaaaattttgatgaggtaa |
19543382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 201 - 322
Target Start/End: Complemental strand, 25986741 - 25986620
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
||||||||||| ||||| |||| |||||||| || || |||||||| |||||||| ||||| ||||| ||||| ||||| |||||||| ||||| || | |
|
|
| T |
25986741 |
gatgctagagccgctgctattgagatgcgaactgtgagaaacacggtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt |
25986642 |
T |
|
| Q |
301 |
tcgaagcttttgatgaggtaag |
322 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
25986641 |
tttaagcttttgatgagataag |
25986620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 111 - 320
Target Start/End: Complemental strand, 41687359 - 41687150
Alignment:
| Q |
111 |
tcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagag |
210 |
Q |
| |
|
||||| |||||| | ||||| || || |||||||| ||||| || |||||||| || || || || |||| ||||||||| || || | ||||| |||| |
|
|
| T |
41687359 |
tcaacagaacaaagaaagagactcaccattgctgtagaattggttgccaatccttcaatcatctttatggatgagcctacatcaggccttgatgccagag |
41687260 |
T |
|
| Q |
211 |
ctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttt |
310 |
Q |
| |
|
|||| |||||||||||||| || || || || || | || ||||| ||||| || || ||||| ||||| |||||||| ||||| ||||| ||| |||| |
|
|
| T |
41687259 |
ctgcagcaattgttatgcgtactgtcagaaatacagcggatacagggagaactgtggtctgcacaattcaccaaccaagcattgatatatttgaatcttt |
41687160 |
T |
|
| Q |
311 |
tgatgaggta |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
41687159 |
tgatgaggta |
41687150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 18238368 - 18238484
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
|||||||||| | ||| ||||| |||||||| || | ||||| || ||||||||||||| ||||| ||||| ||||| |||||||| ||||| || | |
|
|
| T |
18238368 |
gatgctagagtcggtgctattgtgatgcgaactgtgaaaaacacagtagacacaggaagaattgttgtgtgcacaattcaccaaccaagcattgatat-t |
18238466 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
18238467 |
tttaagcttttgatgagg |
18238484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 25 - 319
Target Start/End: Complemental strand, 39537907 - 39537613
Alignment:
| Q |
25 |
agatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaacaacg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || || ||| || | ||| | || || || | |||||||| | |||| ||||| || || || |
|
|
| T |
39537907 |
agatgttcattgaagaagtcatggaacttgtggaactgaaaccactgcggaacgcattagtaggactacctggtgttagcagtctctcaacggagcagcg |
39537808 |
T |
|
| Q |
125 |
caagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgtt |
224 |
Q |
| |
|
||| ||||| |||||||| ||||| || || || ||||| || ||||| ||||||| |||||| || |||||| | ||||| || ||||| || |||||| |
|
|
| T |
39537807 |
caaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctattgtt |
39537708 |
T |
|
| Q |
225 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
||| |||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
39537707 |
atgagaacagttaggaacacagtagacactggaagaacagttgtttgtaccattcaccaacctagcattgatatatttgaatcttttgatgaggt |
39537613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 39547376 - 39547078
Alignment:
| Q |
21 |
ttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaac |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| || || ||| || |||| | | || || | |||||||| | ||||| ||||| || | |
|
|
| T |
39547376 |
ttgtagatgttcattgaggaagtaatggaacttgtggaactgaaaccactgcaaaacgcaatagtaggactacctggtgttagcggtctctcaacggagc |
39547277 |
T |
|
| Q |
121 |
aacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaat |
220 |
Q |
| |
|
| ||||| ||||| |||||||| ||||| || || || ||||| || ||||| ||||||| |||||| || |||||| | ||||| |||||||| || || |
|
|
| T |
39547276 |
agcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagagctgcagctat |
39547177 |
T |
|
| Q |
221 |
tgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
||||||| |||| ||||||||||| || ||||| ||||||||||||||||| ||||| || || || || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
39547176 |
tgttatgagaacagttaggaacacagtagacaccggaagaacagttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39547078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 42153772 - 42153550
Alignment:
| Q |
96 |
ggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctg |
195 |
Q |
| |
|
|||||| ||||||| ||||| |||||| | |||||||| ||||||||||| || | || ||||| || || || || ||||||| ||| || || || | |
|
|
| T |
42153772 |
ggtgtggatggtctatcaacagaacaaaggaagaggcttactattgctgtagagcttgttgccaacccttcaatcatcttcatggatgaaccaacatcag |
42153673 |
T |
|
| Q |
196 |
gattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattga |
295 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||||||||| || || || || || ||||| ||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
42153672 |
gcctcgatgctagagccgctgcaatcgttatgcgaaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagtataga |
42153573 |
T |
|
| Q |
296 |
catattcgaagcttttgatgagg |
318 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
42153572 |
catttttgaagcttttgatgagg |
42153550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 39338949 - 39339243
Alignment:
| Q |
25 |
agatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaacaacg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || || ||| || |||| | | || || | |||||||| | ||||| ||||| || || || |
|
|
| T |
39338949 |
agatgttcattgaggaagtcatggaacttgtggaactgaaaccactgcaaaacgcaatagtaggactacctggtgttagcggtctctcaacggagcagcg |
39339048 |
T |
|
| Q |
125 |
caagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgtt |
224 |
Q |
| |
|
||| ||||| ||| |||| ||||| || || || ||||| || ||||| ||||||| |||||| || ||||| ||||||| || ||||| || |||||| |
|
|
| T |
39339049 |
caaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgagccaacttctgggctagatgcaagggctgcagctattgtt |
39339148 |
T |
|
| Q |
225 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
||| |||| ||||||||||| || ||||| ||||||||||||||||| || || || || || || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
39339149 |
atgagaacagttaggaacacagtagacactggaagaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39339243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 42141970 - 42141748
Alignment:
| Q |
96 |
ggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctg |
195 |
Q |
| |
|
|||||| ||||||| ||||| |||||| | |||||||| ||||| |||||||| | || ||||| || || || || ||||||| ||| || || || | |
|
|
| T |
42141970 |
ggtgtggatggtctatcaacagaacaaaggaagaggcttactatcgctgttgagcttgttgccaacccttcaatcatcttcatggatgaaccaacatcag |
42141871 |
T |
|
| Q |
196 |
gattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattga |
295 |
Q |
| |
|
| | ||||||||||| |||||||| |||||||| ||||| || || || || || ||||| ||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
42141870 |
gcctcgatgctagagccgctgcaatcgttatgcggaccgtgagaaatacagtggatacagggagaactgttgtttgcacaattcatcaaccaagtataga |
42141771 |
T |
|
| Q |
296 |
catattcgaagcttttgatgagg |
318 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
42141770 |
catttttgaagcttttgatgagg |
42141748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 1084710 - 1084415
Alignment:
| Q |
24 |
tagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaacaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || || || || ||||| | || || || | |||||||| | |||| ||||| || | | |
|
|
| T |
1084710 |
tagatgttcattgaggaagtcatggaacttgtggaactgaaatcagtgcgaaacgcattagtaggactacctggtgttagcagtctctcaacagagtagc |
1084611 |
T |
|
| Q |
124 |
gcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgt |
223 |
Q |
| |
|
||| ||||| |||||||| ||||| || || | ||||| || ||||| || |||| |||||| || ||||| ||||||| | || || || ||||| |
|
|
| T |
1084610 |
acaaaaggctgactattgcagttgagttggtttctaatccttctataatatttatggatgagccaacttctgggctagatgcaatggcagcagcgattgt |
1084511 |
T |
|
| Q |
224 |
tatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
|||| |||| ||||||| ||| || ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
1084510 |
tatgagaacagttaggagcacagtagacactggaagaactgttgtttgcaccatccatcaaccaagtattgatatatttgaatcttttgatgaggt |
1084415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 91 - 319
Target Start/End: Original strand, 39366438 - 39366666
Alignment:
| Q |
91 |
tgcctggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctac |
190 |
Q |
| |
|
|||||||||| | |||||| || || || || ||||| ||||||||| |||| |||||||| || || ||||| || ||||| ||||||| |||||| || |
|
|
| T |
39366438 |
tgcctggtgttagtggtctctcgacagagcagcgcaaaaggctaactgttgcagttgaattggtagctaatccttcaataatattcatggatgagccaac |
39366537 |
T |
|
| Q |
191 |
gtctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagt |
290 |
Q |
| |
|
||||| ||||||| || ||||| || || || ||| || | ||||||||||| |||||||| |||||||| |||||||| ||||| || || || || |
|
|
| T |
39366538 |
ttctgggctagatgcgagggctgcagctatagtgatgagagcagttaggaacacagttgacaccggaagaactgttgtttgtaccatccaccagcctagc |
39366637 |
T |
|
| Q |
291 |
attgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |
|
|
| T |
39366638 |
attgatatatttgaatcttttgatgaggt |
39366666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 39564012 - 39563709
Alignment:
| Q |
16 |
aatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaac |
115 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||||| || || ||| || |||| | || || || |||||||||| |||||||| || || |
|
|
| T |
39564012 |
aatggttgcagatgttcgttgaggaagtcatggaacttgtggaactgaaaccactgcaaaacgcattagtaggactgcctggtgttaatggtctctcgac |
39563913 |
T |
|
| Q |
116 |
cgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgct |
215 |
Q |
| |
|
|| || ||||| || | || ||||| ||||| || || || ||||| || ||||| ||||||| ||| || || ||||| ||||||| || ||||| |
|
|
| T |
39563912 |
ggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgca |
39563813 |
T |
|
| Q |
216 |
gcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatg |
315 |
Q |
| |
|
|| ||||| ||| |||| ||||||||||| || |||| ||||||||||||||||| || || || || || || ||||| ||||| ||| ||||||||| |
|
|
| T |
39563812 |
gctattgtgatgagaacagttaggaacacagtaaacactggaagaacagttgtttgtactatccaccagcctagcattgatatatttgaatcttttgatg |
39563713 |
T |
|
| Q |
316 |
aggt |
319 |
Q |
| |
|
|||| |
|
|
| T |
39563712 |
aggt |
39563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 39589094 - 39588789
Alignment:
| Q |
16 |
aatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaac |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||||||| ||||| | || | | | || || ||||| || || | |||||| || || |
|
|
| T |
39589094 |
aatggttgcagatgttcattgaggaagtcatggagcttgtggagctaaacccgcttagggatgcaattgtcggattgccaggggttagtggtctatcgac |
39588995 |
T |
|
| Q |
116 |
cgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgct |
215 |
Q |
| |
|
|| |||||||| ||| | || |||| ||||| |||||||| ||||| || ||||| ||||||| |||||| || || || ||||||| || ||||| |
|
|
| T |
39588994 |
ggagcaacgcaaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagccaacttcggggctagatgcaagggctgca |
39588895 |
T |
|
| Q |
216 |
gcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatg |
315 |
Q |
| |
|
| ||||||||| || | ||||| |||| || ||||||||||||||| ||||||| ||||||||||| || || ||| | ||||| ||| ||||||| | |
|
|
| T |
39588894 |
tctattgttatgagagcagttagaaacatagtggacacaggaagaacaattgtttgtaccattcatcagcccagcattcatatatttgaatcttttgacg |
39588795 |
T |
|
| Q |
316 |
aggtaa |
321 |
Q |
| |
|
|||||| |
|
|
| T |
39588794 |
aggtaa |
39588789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 42171613 - 42171388
Alignment:
| Q |
93 |
cctggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgt |
192 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| | ||||| || | ||||||||| ||||| || || || || || || || ||||||| ||| || || | |
|
|
| T |
42171613 |
cctggtgtggatggtctatcaacagaacaaaggaagagacttagtattgctgtggaattggttgctaacccttcaatcatcttcatggatgaaccaacat |
42171514 |
T |
|
| Q |
193 |
ctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtat |
292 |
Q |
| |
|
| || | ||||||||||| ||||| ||||||||||| ||||| || || || || || ||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
42171513 |
caggccttgatgctagagccgctgctattgttatgcggaccgtgagaaatacagtagatacagggagaactgttgtttgcacaattcatcaaccaagcac |
42171414 |
T |
|
| Q |
293 |
tgacatattcgaagcttttgatgagg |
318 |
Q |
| |
|
|| || || |||||||||||||||| |
|
|
| T |
42171413 |
ggatatttttgaagcttttgatgagg |
42171388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 42132786 - 42132579
Alignment:
| Q |
111 |
tcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagag |
210 |
Q |
| |
|
||||| |||||| | || ||||| ||||||||||| ||||| || || || || || || || ||||||| ||| || || || || | |||||||||| |
|
|
| T |
42132786 |
tcaacagaacaaaggaaaaggcttactattgctgtggaattggttgctaacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagag |
42132687 |
T |
|
| Q |
211 |
ctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttt |
310 |
Q |
| |
|
| ||||| ||||| |||||||| || || ||||| || |||||||| ||||| ||||| ||||| ||||| |||||||| ||||| || || |||||||| |
|
|
| T |
42132686 |
ccgctgccattgtgatgcgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatatttttgaagcttt |
42132587 |
T |
|
| Q |
311 |
tgatgagg |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
42132586 |
tgatgagg |
42132579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 39353792 - 39354086
Alignment:
| Q |
25 |
agatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaaccgaacaacg |
124 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| || || ||| || |||| | || || || | |||||||| ||||| |||| || || || |
|
|
| T |
39353792 |
agatgttcgttgaggaagtcatggaacttgtggaactgaaaccactgcgaaatgcattagtaggacttcctggtgtttgcggtctctcaatggagcagcg |
39353891 |
T |
|
| Q |
125 |
caagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgtt |
224 |
Q |
| |
|
||| ||||| ||| |||| ||||| || || || ||||| || ||||| ||||||| ||| || || ||||| ||||||| || ||||| ||| |||| |
|
|
| T |
39353892 |
caaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagcagttgtg |
39353991 |
T |
|
| Q |
225 |
atgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
||| |||| ||||| ||||| || || |||||||||||||||||||| || || || || || || ||||| ||||| ||| ||||||||||||| |
|
|
| T |
39353992 |
atgagaacagttagaaacacagtagatacaggaagaacagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggt |
39354086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 39574639 - 39574321
Alignment:
| Q |
3 |
tttggatctgataaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtga |
102 |
Q |
| |
|
|||||| |||| ||||||| ||||||| |||||||||||||||| ||||||||| | ||||||||||| | | | |||||| | || ||| | | |
|
|
| T |
39574639 |
tttggagctgaccaatggttacagatgtttgttgaggaagtcatggagctagtggagttgaacccattgagggatgcatatgttggtctcccaggtatta |
39574540 |
T |
|
| Q |
103 |
atggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattaga |
202 |
Q |
| |
|
| ||||| ||||| || || || || || | |||||||| |||||| | ||| ||||| || || || ||||||| |||||| || ||||| ||||| |
|
|
| T |
39574539 |
acggtctatcaactgagcagcgtaaaagattgactattgcagttgaactggtgtgtaatccttctatcatattcatggatgagccaacttctgggttaga |
39574440 |
T |
|
| Q |
203 |
tgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattc |
302 |
Q |
| |
|
||| |||||||| || ||||||||| || | |||||||||| || ||||| ||||||||| |||| || |||||||| || || || ||||| || || |
|
|
| T |
39574439 |
tgcaagagctgcagctattgttatgagagcagttaggaacatagtggacactggaagaacaattgtgtgtaccattcaccagcccagcattgatatcttt |
39574340 |
T |
|
| Q |
303 |
gaagcttttgatgaggtaa |
321 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
39574339 |
gaatctttcgatgaggtaa |
39574321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 319
Target Start/End: Complemental strand, 39621842 - 39621658
Alignment:
| Q |
135 |
actattgctgttgaattagtggccaatccatccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgttatgcgaaccg |
234 |
Q |
| |
|
|||||||| || || |||||||| ||||| || ||||| ||||||| |||||| || || || ||||||| ||| ||| || ||||||||| || || |
|
|
| T |
39621842 |
actattgcggtcgagttagtggcaaatccttcaataatgttcatggatgagccaacttcagggctagatgcaagatctgtcgctattgttatgagagcca |
39621743 |
T |
|
| Q |
235 |
ttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
|||| || | || || | |||||||| ||||| || ||||||||||| ||| |||||| ||||| ||| ||||||||||||| |
|
|
| T |
39621742 |
ttagaaatatagtggagaatggaagaactgttgtctgtgccattcatcaatcaaatattgatatatttgaatcttttgatgaggt |
39621658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 84 - 319
Target Start/End: Original strand, 49773508 - 49773743
Alignment:
| Q |
84 |
gttggtttgcctggtgtgaatggtctttcaaccgaacaacgcaagaggctaactattgctgttgaattagtggccaatccatccataattttcatgggtg |
183 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| ||||||||| |||| ||||| |||||| | || ||||||||||| || || ||||||| || |
|
|
| T |
49773508 |
gttggattacctggtgtgaatggtctgtccacagaacagcgcaagaggttaacgattgcagttgaacttgttgccaatccatctattatattcatggatg |
49773607 |
T |
|
| Q |
184 |
agcctacgtctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatca |
283 |
Q |
| |
|
| ||||| ||||| | ||||| ||||||||||| || || ||| |||| || ||||| || || |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
49773608 |
aacctacctctggccttgatgcaagagctgctgctatagtaatgagaacagtgaggaatacagtggacacagggagaactgttgtctgcacaattcatca |
49773707 |
T |
|
| Q |
284 |
accaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
|| |||||||| ||||| || |||||||||||||| |
|
|
| T |
49773708 |
gcctagtattgatatatttgatgcttttgatgaggt |
49773743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 12717123 - 12717006
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| || || ||||| || |||||||| ||||| ||||| ||||| ||||| |||||||| ||||| || | |
|
|
| T |
12717123 |
gatgctagagccgctgctattgtgatgtgaactgtgagaaacacagtagacacagggagaactgttgtgtgcacaattcaccaaccaagcattgatattt |
12717024 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
12717023 |
tttaagcttttgatgagg |
12717006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 25522972 - 25522821
Alignment:
| Q |
168 |
ataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttg |
267 |
Q |
| |
|
||||| ||||||| ||| ||||| || ||| | ||||| | || ||||| ||||||||| |||| ||| | || || ||||| || |||||||| || | |
|
|
| T |
25522972 |
ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgttgatactggaagaactgtgg |
25522873 |
T |
|
| Q |
268 |
tttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt |
319 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
25522872 |
tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt |
25522821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 4501718 - 4501864
Alignment:
| Q |
174 |
ttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgca |
273 |
Q |
| |
|
||||||| |||||| || ||||| ||||||| ||||| ||||| ||||||||| | || || || ||||| ||||| || |||||||||||||| |||| |
|
|
| T |
4501718 |
ttcatggatgagccaacttctggtctagatgcaagagcagctgctattgttatgaggactgtaagaaacactgttgatactggaagaacagttgtgtgca |
4501817 |
T |
|
| Q |
274 |
ccattcatcaaccaagtattgacatattcgaagcttttgatgaggta |
320 |
Q |
| |
|
| ||||||||||| || ||||| || || ||||| |||||||||||| |
|
|
| T |
4501818 |
caattcatcaacctagcattgatatctttgaagcctttgatgaggta |
4501864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 43530787 - 43530874
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaa |
288 |
Q |
| |
|
|||||||||||||| ||| | |||||||| || ||||| ||||| |||| ||||| ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
43530787 |
gatgctagagctgcagcagtagttatgcgtactgttagaaacacagttgttacagggagaactgttgtgtgcacaattcatcaaccaa |
43530874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 31383161 - 31383044
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| | || ||||| | |||||||||||||| |||| ||||| ||||| ||||||| ||||| || | |
|
|
| T |
31383161 |
gatgctagagttgctgctattgtgatgcgaactatgagaaacacaatagacacaggaagaactattgtgtgcacaattcaccaaccaaacattgatattt |
31383062 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31383061 |
tttaagcttttgatgagg |
31383044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 5196222 - 5196339
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
||||||||||| ||||| ||||| |||| ||| || || ||||| || || ||| | |||||| |||| ||||| ||| | |||||||| ||||| || | |
|
|
| T |
5196222 |
gatgctagagccgctgctattgtgatgcaaactgtgagaaacacagtagatacatggagaacatttgtgtgcacaatttaccaaccaagcattgatattt |
5196321 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
5196322 |
tttaagcttttgatgagg |
5196339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 318
Target Start/End: Original strand, 8802 - 8919
Alignment:
| Q |
201 |
gatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatat |
300 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || || ||||| || |||||||| |||| ||||| ||||| ||||| |||||||||||||| || | |
|
|
| T |
8802 |
gatgctagagctgctgctattgtgatgcgaactgtgagaaacacagtagacacagggagaaatgttgtgtgcacaattcaccaaccaagtattgatattt |
8901 |
T |
|
| Q |
301 |
tcgaagcttttgatgagg |
318 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
8902 |
tttaagcttttgatgagg |
8919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 29777435 - 29777586
Alignment:
| Q |
165 |
tccataattttcatgggtgagcctacgtctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacag |
264 |
Q |
| |
|
||||| ||||| |||| |||||||| |||||| | |||||| | || || || || ||||||||||| ||| | ||||| ||||| || |||||||| | |
|
|
| T |
29777435 |
tccattatttttatggacgagcctacatctggacttgatgctcgtgccgcagctatcgttatgcgaactgttcgcaacactgttgatactggaagaactg |
29777534 |
T |
|
| Q |
265 |
ttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttgatga |
316 |
Q |
| |
|
|||| || ||||| ||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
29777535 |
ttgtctgtaccatacatcaaccaagtattgatatttttgaagcatttgatga |
29777586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 318
Target Start/End: Complemental strand, 10901823 - 10901718
Alignment:
| Q |
213 |
gctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttgtttgcaccattcatcaaccaagtattgacatattcgaagcttttg |
312 |
Q |
| |
|
||||| ||||| ||| |||| || || ||||| || |||||||||||||| ||||| ||||| ||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
10901823 |
gctgctattgtgatgtgaactgtgagaaacacagtagacacaggaagaactgttgtgtgcacaattcaccaaccaagcattgatattttttaagcttttg |
10901724 |
T |
|
| Q |
313 |
atgagg |
318 |
Q |
| |
|
|||||| |
|
|
| T |
10901723 |
atgagg |
10901718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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