View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7884_high_3 (Length: 376)

Name: NF7884_high_3
Description: NF7884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7884_high_3
NF7884_high_3
[»] chr7 (12 HSPs)
chr7 (1-360)||(3146128-3146487)
chr7 (89-360)||(8645829-8646100)
chr7 (131-360)||(8640646-8640876)
chr7 (223-336)||(10495343-10495456)
chr7 (245-342)||(8658468-8658565)
chr7 (267-336)||(13334337-13334406)
chr7 (222-342)||(8666501-8666621)
chr7 (245-332)||(1300563-1300650)
chr7 (132-353)||(8586661-8586885)
chr7 (261-349)||(8615836-8615924)
chr7 (222-342)||(8672035-8672155)
chr7 (131-232)||(6788503-6788604)
[»] chr6 (2 HSPs)
chr6 (135-349)||(28910369-28910586)
chr6 (131-354)||(12488609-12488832)
[»] chr8 (3 HSPs)
chr8 (89-349)||(43743765-43744025)
chr8 (92-182)||(43441231-43441321)
chr8 (189-348)||(43445734-43445894)
[»] chr5 (1 HSPs)
chr5 (93-349)||(28218871-28219127)
[»] chr2 (3 HSPs)
chr2 (187-331)||(16658497-16658638)
chr2 (89-241)||(43624404-43624556)
chr2 (305-349)||(16662954-16662998)
[»] chr1 (4 HSPs)
chr1 (265-336)||(29464977-29465048)
chr1 (246-343)||(4679516-4679613)
chr1 (236-358)||(15594134-15594256)
chr1 (270-336)||(29214561-29214627)
[»] chr4 (1 HSPs)
chr4 (222-342)||(9336857-9336977)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 3146128 - 3146487
Alignment:
Q  1 cttaagtcatagttccaacgacaataacgatttaaataacatatcccnnnnnnncttcaccaagacaacacttaaaatatcaattgacaacaaaaaacta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||||||||||||    
T  3146128 cttaagtcatagttccaacgacaataacgatttaaataacatatcccaaaaaaacttccccaagacaacacttaaaatatcaattgacaacaaaaaacta 3146227  T
Q  101 gacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaatatcaagtaaactt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3146228 gacagatttgcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtactatcaagtaaactt 3146327  T
Q  201 gtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3146328 gtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacac 3146427  T
Q  301 aataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3146428 aataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggt 3146487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 360
Target Start/End: Original strand, 8645829 - 8646100
Alignment:
Q  89 aacaaaaaactagacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaata 188  Q
    |||||||||||||||| || |||| || ||  ||| ||  | ||| |||||||||||||| |||||||| |||||||| |||||||| || |    | |     
T  8645829 aacaaaaaactagacatatcttccaatgatttgttggaatatactatcaagctccttcagatgattttccagaacatcaatttcactttgtttatcactg 8645928  T
Q  189 tcaagtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttca 288  Q
    ||||| | | |||||||||| || ||||||  |||||||||||||||||||| ||| ||||||||||  || ||||||||| |||||| ||| || ||||    
T  8645929 tcaagcagatttgtggccttcgtaattgcattattgatcttgtcattttctttagatgagagatttaatttaacatccttcctctttagagctttcttca 8646028  T
Q  289 tcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggt 360  Q
     ||| ||||  ||||  |||||| ||||||||||||||||||||||||| ||||| ||||| |||| |||||    
T  8646029 gcttataaatgcaatggtctaatccattcattacattggccttccttaggaatttctcatcttcaatacggt 8646100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 360
Target Start/End: Complemental strand, 8640876 - 8640646
Alignment:
Q  131 actctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaatatcaagtaaacttgtggcctttgtgattgcagaattgatcttg 230  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||| || | |  |   ||||| ||| |||||||||| || |||| |  ||||||||||    
T  8640876 actctcaagctccttcagatgattttccagaacatatatttcactttgtttgtcacagtcaagcaaatttgtggccttcgtaattgtatgattgatcttg 8640777  T
Q  231 tcattttctt-gagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggcc 329  Q
    |||||||||| |||| ||||| ||||  || | |||||| ||||||| |||||| |||||||||||||  ||||| |||||| ||||||||| |||||||    
T  8640776 tcattttctttgagaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggcc 8640677  T
Q  330 ttccttagaaatttttcatcctcaacacggt 360  Q
    |||||||| ||||| ||| | |||| |||||    
T  8640676 ttccttaggaatttctcagcttcaatacggt 8640646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 336
Target Start/End: Complemental strand, 10495456 - 10495343
Alignment:
Q  223 tgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattac 322  Q
    ||||||| ||| ||||||||| ||||||  | | ||| || ||||||||||||||||  || ||||| |||||||||||| ||||||||||| |||||||    
T  10495456 tgatcttctcaatttcttgagcggagaggatgagattaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcactcattac 10495357  T
Q  323 attggccttcctta 336  Q
     |||||||||||||    
T  10495356 cttggccttcctta 10495343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 8658468 - 8658565
Alignment:
Q  245 ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatt 342  Q
    |||||| |||| ||| ||||||||||| ||||| ||||| ||||  ||||||||||||||||| ||  |||||||||| ||||||||||||| |||||    
T  8658468 ggagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattcattactttggccttccttaaaaatt 8658565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 336
Target Start/End: Complemental strand, 13334406 - 13334337
Alignment:
Q  267 ttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctta 336  Q
    |||||||||||||  || ||||| |||||||||||| ||||||||||||||||||| |||||||||||||    
T  13334406 ttcttctttaaagtgttcttcatattgtaaacacaagaatctaatgcattcattaccttggccttcctta 13334337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 8666501 - 8666621
Alignment:
Q  222 ttgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcatta 321  Q
    ||||||||  || ||||||||| ||||||| | | ||| |||||||||||||||||||| || ||||| |||||||||||| |||||||| ||  |||||    
T  8666501 ttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatctaattcacacatta 8666600  T
Q  322 cattggccttccttagaaatt 342  Q
    | |||||| | |||| |||||    
T  8666601 ccttggcccttcttaaaaatt 8666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 1300563 - 1300650
Alignment:
Q  245 ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttc 332  Q
    ||||||||||| ||| ||||||||||||||||| ||||| ||||  ||||||||||||||||| ||  ||||||||||  ||||||||    
T  1300563 ggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcattactgtggccttc 1300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 353
Target Start/End: Complemental strand, 8586885 - 8586661
Alignment:
Q  132 ctctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaat---atcaagtaaacttgtggcctttgtgattgcagaattgatct 228  Q
    ||||||||||||||||| ||||   ||||||||||||| ||| ||| |||| || |   |||||| ||| |||| ||| |||| ||||||  ||||||||    
T  8586885 ctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattcttatcaagcaaatttgtagccattgtaattgcatgattgatct 8586786  T
Q  229 tgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggc 328  Q
    | | |  || |||||| |||   ||||  || | |||||| ||||||| ||||||  | | |||||||||||||| |||||||| ||||||||| || ||    
T  8586785 ttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaatgaattcattaccttagc 8586686  T
Q  329 cttccttagaaatttttcatcctca 353  Q
    ||||||||| ||||| | |||||||    
T  8586685 cttccttaggaatttctgatcctca 8586661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 8615836 - 8615924
Alignment:
Q  261 acatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatc 349  Q
    |||||||| ||||||| ||||||  ||| ||||||||  || | ||||||| |||||||||| |||||||||||||| |||||||||||    
T  8615836 acatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatc 8615924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 8672155 - 8672035
Alignment:
Q  222 ttgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcatta 321  Q
    ||||||||  || ||||||||| ||||||| | | ||| ||||  ||||||| |||||| || ||||| |||||||||||| |||||||||||  |||||    
T  8672155 ttgatctttgcaatttcttgaggggagagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatctaatgcacacatta 8672056  T
Q  322 cattggccttccttagaaatt 342  Q
    | |||||| | |||| |||||    
T  8672055 ccttggcccttcttaaaaatt 8672035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 6788503 - 6788604
Alignment:
Q  131 actctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaatatcaagtaaacttgtggcctttgtgattgcagaattgatcttg 230  Q
    |||||||||||| ||||| |||  |||||||||||| ||||||  ||| ||| || ||||||| ||| |||  ||  | |||| ||||||||||||||||    
T  6788503 actctcaagctctttcagatgaccttcaagaacatcaatttcaacctgttggttactatcaagcaaatttgacgctgtcgtgagtgcagaattgatcttg 6788602  T
Q  231 tc 232  Q
    ||    
T  6788603 tc 6788604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 135 - 349
Target Start/End: Original strand, 28910369 - 28910586
Alignment:
Q  135 tcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaata---tcaagtaaacttgtggcctttgtgattgcagaattgatcttgt 231  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||| || ||   ||||| ||| ||||| ||||| | |||||||| || |||||||    
T  28910369 tcaagatccttcagatgattttcaagaatatctatttcactctgctggttactaatttcaagcaaatttgtgtcctttttaattgcagagttaatcttgt 28910468  T
Q  232 cattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggcctt 331  Q
    ||||||||||||||||||| |||| |||   ||||||||| |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  28910469 cattttcttgagaggagagctttagattagtatccttcttgtttaaatcattcttcatcttgtaaacacaataatgtaatgcattcattacattggcctt 28910568  T
Q  332 ccttagaaatttttcatc 349  Q
     |||||||||||||||||    
T  28910569 tcttagaaatttttcatc 28910586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 131 - 354
Target Start/End: Complemental strand, 12488832 - 12488609
Alignment:
Q  131 actctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaatatcaagtaaacttgtggcctttgtgattgcagaattgatcttg 230  Q
    |||||||||||||||||  |||||||| ||||||| ||||||||| || |    | ||||||  ||| |||||||||| || || |||  |||||||||     
T  12488832 actctcaagctccttcaaatgattttccagaacatgtatttcactttgtttttcactatcaac-aaatttgtggccttcgtaatcgcatgattgatctta 12488734  T
Q  231 tcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggc-c 329  Q
    |||||||||| ||| ||||| ||||  || ||||||||| |||||| |||||| |||||||||||||  ||||| |||||| ||||||||| ||||||      
T  12488733 tcattttctttagatgagagctttaatttaacatccttcctctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggctt 12488634  T
Q  330 ttccttagaaatttttcatcctcaa 354  Q
    |||||||| ||||| ||||| ||||    
T  12488633 ttccttaggaatttctcatcttcaa 12488609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 89 - 349
Target Start/End: Original strand, 43743765 - 43744025
Alignment:
Q  89 aacaaaaaactagacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaata 188  Q
    |||||||| ||||||| | |||| ||||||| ||| ||  | |||||||||||||||||| ||||||||||||||||||||||||||||||||  ||       
T  43743765 aacaaaaatctagacaaactttcttataatgtgttggaatacactctcaagctccttcagatgattttcaagaacatctatttcactctgctgattatcg 43743864  T
Q  189 tcaagtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttca 288  Q
    || || ||| |||||| |||||| ||||||||| ||||||||||| || ||||||| || || ||||  || |||||||| ||||||| ||||||  |||    
T  43743865 tcgagcaaatttgtggtctttgtaattgcagaaatgatcttgtcagttacttgagaagaaagctttaatttaacatccttattctttacagcattcctca 43743964  T
Q  289 tcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatc 349  Q
     ||||||||| || | |||||||||||||||||||||||| ||||| |||||||| |||||    
T  43743965 acttgtaaacccattcatctaatgcattcattacattggctttcctaagaaatttctcatc 43744025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 43441231 - 43441321
Alignment:
Q  92 aaaaaactagacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgg 182  Q
    ||||| ||||||| | |||| ||||||| ||| ||  | |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  43441231 aaaaatctagacaaactttcttataatgtgttcgaatacactctcaagctccttcagatgattttcaagaacatctatttcactttgctgg 43441321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 348
Target Start/End: Original strand, 43445734 - 43445894
Alignment:
Q  189 tcaagtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttca 288  Q
    ||||| ||| |||||| |||||| |||||| | |||||||||||| || ||| ||| ||||| ||||  || | |||||| ||||||| | ||||  |||    
T  43445734 tcaagcaaatttgtggtctttgtaattgcatagttgatcttgtcagttactttagacgagagctttaatttaatatccttattctttacaacattcctca 43445833  T
Q  289 tcttgtaaa-cacaataatctaatgcattcattacattggccttccttagaaatttttcat 348  Q
     | |||||| | || | |||||||||||||||||||||||||||||| |||||||| ||||    
T  43445834 acctgtaaaacccattcatctaatgcattcattacattggccttcctaagaaatttctcat 43445894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 349
Target Start/End: Original strand, 28218871 - 28219127
Alignment:
Q  93 aaaaactagacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaatatcaa 192  Q
    |||||||||||| |||| | ||||||| |||  |  | |||||  ||||||||||| |||||||||||||||| ||||||||||| |||| || |||||     
T  28218871 aaaaactagacatatttacttataatgtgttgcaatatactcttgagctccttcagatgattttcaagaacatgtatttcactcttctggttagtatcat 28218970  T
Q  193 gtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatctt 292  Q
    | ||| |||| ||||| || ||| |||| |||||||||||| ||| || ||| || || | ||   | | |||||| ||||||| ||||||  ||| |||    
T  28218971 ggaaatttgttgccttcgtaatttcagagttgatcttgtcaatttttttagaagacagctgtaatctaatatccttattctttagagcattcctcaactt 28219070  T
Q  293 gtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatc 349  Q
    |||||| || | ||||||||||||||| |||||||||||||||||||||||||||||    
T  28219071 gtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatc 28219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 16658638 - 16658497
Alignment:
Q  187 tatcaagtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcattttt 286  Q
    ||||||| ||||||||||||   || ||||||   |||||||| ||| |||||||||||||||| |||| ||||||||| |||||   ||||||||| ||    
T  16658638 tatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatctttctt---taaagcattctt 16658542  T
Q  287 catcttgtaaacacaataatctaatgcattcattacattggcctt 331  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||||    
T  16658541 catattgtaaacacaataatccaatgcattcattaccttggcctt 16658497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 241
Target Start/End: Original strand, 43624404 - 43624556
Alignment:
Q  89 aacaaaaaactagacagattttcctataatgagtttgagcagactctcaagctccttcaggtgattttcaagaacatctatttcactctgctgggtaata 188  Q
    ||||||||||||||| ||||||||| ||||| ||| ||  | ||||||||||||||| || ||||| || ||||||||  ||| ||||| |||  || |     
T  43624404 aacaaaaaactagacggattttcctttaatgcgttggaatatactctcaagctccttaagatgattctcgagaacatccgttttactctcctgattagtg 43624503  T
Q  189 tcaagtaaacttgtggcctttgtgattgcagaattgatcttgtcattttcttg 241  Q
    ||||| ||| ||||||||||||| ||||||  |||||||||||||||||||||    
T  43624504 tcaagcaaatttgtggcctttgtaattgcattattgatcttgtcattttcttg 43624556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 16662998 - 16662954
Alignment:
Q  305 atctaatgcattcattacattggccttccttagaaatttttcatc 349  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||    
T  16662998 atctaatgcattcattaccttggccttccttaggaatttctcatc 16662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 29464977 - 29465048
Alignment:
Q  265 ccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctta 336  Q
    ||||||||||||| | ||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||||    
T  29464977 ccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattacattggccttcctta 29465048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 4679613 - 4679516
Alignment:
Q  246 gagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaattt 343  Q
    ||||| |||| ||| ||||||||||||||||||||||| || || |||||||||||| | || |||||| ||||||| || |||||||||| ||||||    
T  4679613 gagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaattt 4679516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 15594134 - 15594256
Alignment:
Q  236 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 335  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  15594134 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 15594233  T
Q  336 agaaatttttcatcctcaacacg 358  Q
    || ||||| ||||| ||| ||||    
T  15594234 aggaatttctcatcttcagcacg 15594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 29214627 - 29214561
Alignment:
Q  270 ttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctta 336  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||| || |||| |||||||||||||    
T  29214627 ttctttaaagtatttttcatattgtaaacacaagaatctaatgcactcgttaccttggccttcctta 29214561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 9336977 - 9336857
Alignment:
Q  222 ttgatcttgtcattttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcatta 321  Q
    |||||||| ||| |||||||||  | |||| | | ||| ||||  |||||||||||||| || ||||| |||||||||||| |||||||||||  |||||    
T  9336977 ttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttctttaaagcgttcttcatattgtaaacacaagaatctaatgcacacatta 9336878  T
Q  322 cattggccttccttagaaatt 342  Q
    | |||||| | |||| |||||    
T  9336877 ccttggcccttcttaaaaatt 9336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University