View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7884_high_5 (Length: 236)
Name: NF7884_high_5
Description: NF7884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7884_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 6154809 - 6154579
Alignment:
| Q |
1 |
ttccttgtgttactgttgtttcatgtcgccgccgtaggaggttacgttggggttcttctttgttatcgtcacagatgggcaattggtctgttttatgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6154809 |
ttccttgtgttactgttgtttcatgtcgccgccgtaggaggttacgttggggttcttctttgttgtcgtcacagatgggcaattggtctgttttatgtcc |
6154710 |
T |
|
| Q |
101 |
catctcaagcatgggcggatgtacgttgaaatatggcgtggcagctacaacgccagattttagcctaatttttgttttatatgcataataacataaggca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||| ||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6154709 |
catctcaagcatgggcggatgtacgttgaaacatggtgtgacagctgcaacaccagattctagcctaatttttgttttatatgcataataacataaggca |
6154610 |
T |
|
| Q |
201 |
cgggaaattgggaaacacaaacaaaacaaaa |
231 |
Q |
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||||||||||| ||||||| |||| |||||| |
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| T |
6154609 |
cgggaaattggaaaacacacacaacacaaaa |
6154579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 18431757 - 18431664
Alignment:
| Q |
113 |
gggcggatgtacgttgaaatatggcgtggcagctacaacgccagattttagcctaatttt--tgttttatatgcataataacataaggcacgggaa |
206 |
Q |
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||||||||||| ||||| |||| ||||||||| | || ||||||| |||||||||||| | ||||||||||||| ||||||||| ||||||| |
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| T |
18431757 |
gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaattttaattttttatatgcata--aacataaggtacgggaa |
18431664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 34044362 - 34044470
Alignment:
| Q |
1 |
ttccttgtgttactgttgtttcatgtcgccgccgtaggaggttacgttggggttcttctttgttatcgtcacagatgggcaattggtctgttttatgtcc |
100 |
Q |
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|
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34044362 |
ttccttgtgttattgttgttttatgtcgccgccataggaggttacgttggggttcttctttgttgtcgtcacagatgggcaattggtctgttttatgtcc |
34044461 |
T |
|
| Q |
101 |
catctcaag |
109 |
Q |
| |
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||||||||| |
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| T |
34044462 |
catctcaag |
34044470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 424881 - 424784
Alignment:
| Q |
110 |
catgggcggatgtacgttgaaatatggcgtggcagctacaacgccagattttagcctaatttttgttttatatgcataataacataaggcacgggaaa |
207 |
Q |
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|
||||||||||||||| |||||| |||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
424881 |
catgggcggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaatttttgttttatatgcataataacataaggcaggggaaa |
424784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 16916488 - 16916397
Alignment:
| Q |
113 |
gggcggatgtacgttgaaatatggcgtggcagctacaacgccagattttagcctaatttttgttttatatgcataataacataaggcacgggaa |
206 |
Q |
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|
||||||||||| ||||| |||| ||| ||||| | || ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
16916488 |
gggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaattttttttttatatgcata--aacataaggcacgggaa |
16916397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 46437323 - 46437396
Alignment:
| Q |
127 |
tgaaatatggcgtggcagctacaacgccagattttagcctaatttttgttttatatgcataataacataaggcacg |
202 |
Q |
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||||| |||| ||||||||| | || | ||||| || |||||||||| ||||||||||||| ||||||||||||| |
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| T |
46437323 |
tgaaacatggtgtggcagctgccacacaagattataacctaattttttttttatatgcata--aacataaggcacg |
46437396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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