View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7884_low_2 (Length: 591)
Name: NF7884_low_2
Description: NF7884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7884_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 14 - 572
Target Start/End: Complemental strand, 23333847 - 23333289
Alignment:
| Q |
14 |
ggacatcacgaagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgct |
113 |
Q |
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| T |
23333847 |
ggacataacgaagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgct |
23333748 |
T |
|
| Q |
114 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333747 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
23333648 |
T |
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| Q |
214 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333647 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatg |
23333548 |
T |
|
| Q |
314 |
ctgaattacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgc |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333547 |
ctgacttacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgc |
23333448 |
T |
|
| Q |
414 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtggtggattctttttggactgccgtatttt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23333447 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtggtggattctttttggactgctgtatttt |
23333348 |
T |
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| Q |
514 |
ttcttatggagtctttctatcttgaccattaaaatttagctgagcaccagattttaatt |
572 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
23333347 |
ttcttatggagtctttctgtcttgaccattaaaattaagctgagcaccagattttaatt |
23333289 |
T |
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