View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7885_high_12 (Length: 273)

Name: NF7885_high_12
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7885_high_12
NF7885_high_12
[»] chr6 (7 HSPs)
chr6 (1-273)||(11018630-11018902)
chr6 (199-273)||(11002447-11002521)
chr6 (205-273)||(10968273-10968341)
chr6 (205-273)||(10982223-10982291)
chr6 (199-273)||(11079588-11079662)
chr6 (199-271)||(18300112-18300184)
chr6 (31-75)||(11079429-11079473)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11018630 - 11018902
Alignment:
Q  1 aaggttttcttagatatggcgacaagtatgagggaaagtgatggagttatcataaacactttcgatgccattgaaggaagagctgcaaaagctttaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11018630 aaggttttcttagatatggcgacaagtatgagggaaagtgatggagttatcataaacactttcgatgccattgaaggaagagctgcaaaagctttaaaag 11018729  T
Q  101 cagggttgtgtctaccagaaggaacaacacctccattgttttgtattggaccaatgatttcacctccttgtaagggtgaagatgaaagagggggtacatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  11018730 cagggttgtgtctaccagaaggaacaacacctccattgttttgtattggaccaatgatttcacctccttgtaagggtgaagatgaaagagggagttcatg 11018829  T
Q  201 tttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11018830 tttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 11018902  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 11002447 - 11002521
Alignment:
Q  199 tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 273  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  11002447 tgtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttct 11002521  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 10968273 - 10968341
Alignment:
Q  205 agttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 273  Q
    ||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||||||||||    
T  10968273 agttggctcgagtcgcaatctagtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttct 10968341  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 10982223 - 10982291
Alignment:
Q  205 agttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 273  Q
    |||||||| || |||||||| | |||||||||||||||||| || ||||||||||||||||||||||||    
T  10982223 agttggcttgagtcgcaacctattcaaagcgtcgtgttgttaagttttggaagcatgggaagattttct 10982291  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 11079588 - 11079662
Alignment:
Q  199 tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttct 273  Q
    ||||||||||||||||| || || ||| ||||||||||||| |||||||||||||||||| | || |||||||||    
T  11079588 tgtttgagttggctcgattcacagccaggtcaaagcgtcgttttgttgagctttggaagcttagggagattttct 11079662  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 18300184 - 18300112
Alignment:
Q  199 tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagatttt 271  Q
    ||||||||||||||| ||| |||||| |||||||| || ||||| |||||||||||||||   ||||||||||    
T  18300184 tgtttgagttggctcaacttgcaacctagtcaaagtgttgtgtttttgagctttggaagctatggaagatttt 18300112  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 11079429 - 11079473
Alignment:
Q  31 agggaaagtgatggagttatcataaacactttcgatgccattgaa 75  Q
    ||||||||||||||  ||||| |||||||||||||||| ||||||    
T  11079429 agggaaagtgatgggattatcgtaaacactttcgatgctattgaa 11079473  T

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