View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7885_high_3 (Length: 585)

Name: NF7885_high_3
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7885_high_3
NF7885_high_3
[»] chr1 (1 HSPs)
chr1 (10-569)||(24153902-24154467)
[»] chr8 (5 HSPs)
chr8 (46-89)||(38141477-38141520)
chr8 (46-90)||(19237864-19237908)
chr8 (46-90)||(19311048-19311092)
chr8 (46-89)||(9492499-9492542)
chr8 (46-91)||(14154375-14154420)
[»] chr2 (1 HSPs)
chr2 (46-90)||(20559425-20559469)
[»] scaffold0785 (1 HSPs)
scaffold0785 (46-89)||(498-541)
[»] scaffold0902 (1 HSPs)
scaffold0902 (46-130)||(2254-2340)
[»] chr6 (1 HSPs)
chr6 (46-92)||(29618443-29618489)
[»] chr5 (1 HSPs)
chr5 (46-90)||(32401582-32401626)
[»] chr4 (1 HSPs)
chr4 (46-90)||(29907705-29907749)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Complemental strand, 24154467 - 24153902
Alignment:
Q  10 gtgagaagaagggaggagaagagtttagccaaacatatatgctcttaagaatctagattacatatgaattgaagaaactccacatttattctataatctt 109  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24154467 gtgataagaagggaggagaagagtttagctaaacatatatgctgttaagaatgtagattacatatgaattgaagaaactccacatttattctataatctt 24154368  T
Q  110 gatatttgatttattaccagaagagagaaagagtttccgcatcattttcatggtttattttagtattttggtgggtgggggaagtaaaacataattccat 209  Q
    || |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24154367 gacatttgatttaataccagaagagaggaagagtttccgcttcattttcatggtttattttagtattttggtgggtgggggaagtaaaacataattccat 24154268  T
Q  210 tttcatctcaatttgtttttaagtcttcca------acatcactttccattnnnnnnnnnnnnnnnnntgtaaacggttatttgtcgtcgttccactagg 303  Q
    ||||||||||||||||||||||||||||||      |||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  24154267 tttcatctcaatttgtttttaagtcttccacgcagtacatcactttccattaaaaaaataaaataaaatgtaaacggttatttgtcgtcgttccactagg 24154168  T
Q  304 aatcaattttatgagtaagtggaatcttcacttcaacattatcattttcatggcattaactaactatttctcattctcacaacagcacacttcccatttt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24154167 aatcaattttatgagtaagtggaatcttcacttcaacattatcattttcatggcattaactaactatttctcattctcacaacaacacacttcccatttt 24154068  T
Q  404 acactttccattttctcacaaccatgctcaattcccctatactctccctttctaaccacacccccatcatctaccatcacaccccacctacaaagtttca 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24154067 acactttccattttctcacaaccatgctcaattcccctatactctccctttctaaccacacccccatcatctaccatcacaccccacctacaaagtttca 24153968  T
Q  504 atctttaccttcatgtagctatggaagacctgaattttcatccgggtcattctcaaatgcttttag 569  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24153967 atctttaccttcatgtagctatggaagacctgaattttcatctgggtcatgctcaaatgcttttag 24153902  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 38141520 - 38141477
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactc 89  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  38141520 atatgttcttaagaatttagattacatatgaattgaagaaactc 38141477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 19237864 - 19237908
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcc 90  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||    
T  19237864 atatgctcttaagaattcagattgcatatgaattgaagaaactcc 19237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 19311048 - 19311092
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcc 90  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||    
T  19311048 atatgctcttaagaattcagattgcatatgaattgaagaaactcc 19311092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 9492542 - 9492499
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactc 89  Q
    |||||||||||||||| |||||| |||||| |||||||||||||    
T  9492542 atatgctcttaagaatttagattgcatatggattgaagaaactc 9492499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 14154375 - 14154420
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcca 91  Q
    |||| ||||||||||| |||||| |||||| |||||||||||||||    
T  14154375 atatcctcttaagaatttagattgcatatggattgaagaaactcca 14154420  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 20559425 - 20559469
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcc 90  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  20559425 atatgctcttaagaatttagattacatatgggttgaagaaactcc 20559469  T

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Target: scaffold0785 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 498 - 541
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactc 89  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||    
T  498 atatgctattaagaatttagattgcatatgaattgaagaaactc 541  T

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Target: scaffold0902 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 2254 - 2340
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactccacatt-ta-ttctataatcttgatatttgatttattaccaga 130  Q
    |||||||||||||||| |||||| |||||| || ||||||||||| | || || |||| || |||||| |||||||||||| |||||    
T  2254 atatgctcttaagaatttagattgcatatggatcgaagaaactccgccttgtatttctgtagtcttgacatttgatttattgccaga 2340  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 29618489 - 29618443
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactccac 92  Q
    |||||||||||||||| |||||| |||||| || |||||||||||||    
T  29618489 atatgctcttaagaatttagattgcatatggatcgaagaaactccac 29618443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 32401626 - 32401582
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcc 90  Q
    |||||||||||||||| |||||| |||||| || |||||||||||    
T  32401626 atatgctcttaagaatttagattgcatatggatcgaagaaactcc 32401582  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 29907749 - 29907705
Alignment:
Q  46 atatgctcttaagaatctagattacatatgaattgaagaaactcc 90  Q
    ||||||| |||||||| |||||| |||||| ||||||||||||||    
T  29907749 atatgctattaagaatttagattgcatatggattgaagaaactcc 29907705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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