View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_high_6 (Length: 395)
Name: NF7885_high_6
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 41704088 - 41703717
Alignment:
| Q |
1 |
attctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgt |
100 |
Q |
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| T |
41704088 |
attctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgt |
41703989 |
T |
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| Q |
101 |
atagtgccaaggtaaacaagaggtggaatatcacttgttatgtat---------------------tatagtttcaaaactaagaactaacatgagttaa |
179 |
Q |
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| T |
41703988 |
atagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactttcaaaactaagaactaacatgagttaa |
41703889 |
T |
|
| Q |
180 |
ttgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg----ataatagttcaataatcctgcactg |
275 |
Q |
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| T |
41703888 |
ttgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggatatataatagttcaataatcctgcactg |
41703796 |
T |
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| Q |
276 |
tctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcgaaagaag |
354 |
Q |
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| T |
41703795 |
tctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcgaaagaag |
41703717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 41467192 - 41467329
Alignment:
| Q |
146 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac |
245 |
Q |
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| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac |
41467291 |
T |
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| Q |
246 |
cttggataatagttcaataatcctgcactgtctgcctacat |
286 |
Q |
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| T |
41467292 |
cttagataatagttc---aatcctgcactgtctacctacat |
41467329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 41497620 - 41497680
Alignment:
| Q |
335 |
caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttctt |
395 |
Q |
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| T |
41497620 |
caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttctt |
41497680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
| Q |
146 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta |
244 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| || |
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| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta |
36467204 |
T |
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| Q |
245 |
ccttggataatagttcaataatcctgcactgtctgcctacat |
286 |
Q |
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| T |
36467205 |
ccttagatattagttc---aatcctgcactgcctgcctacat |
36467243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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