View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_1 (Length: 608)
Name: NF7885_low_1
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 138 - 598
Target Start/End: Complemental strand, 37615703 - 37615240
Alignment:
| Q |
138 |
gtcactcaagactttatattggagatttgttattatgaggatatatcataaaataggaagattactaattaaaagctaccttctcattgagagcaatgga |
237 |
Q |
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| T |
37615703 |
gtcactcaagactttatattggagatttgttattatgaggatatatcataaaatagggagattactaattaaaagctaccttctcattgagagcaatgga |
37615604 |
T |
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| Q |
238 |
cttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaagttctaaaattacaacgagcaaat |
337 |
Q |
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| T |
37615603 |
cttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaagttccaaaattacaacgagcaagt |
37615504 |
T |
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| Q |
338 |
gtgcttgtgagatatgaaactctaagttcagtaatagccattgtatttgcaagcttatctctttccttctat---gtatgtaataacacaaattggattg |
434 |
Q |
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| T |
37615503 |
gtgcttgtgagatatgaaactctaagttcagtaaaagccattgtatttgcaagcttatgtctttccttctatgtagtatgcgataacacaaattggattg |
37615404 |
T |
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| Q |
435 |
cccacttatatagactttctatctagcttacacaattgactggtattttgtaatattatattctaataccaaaattctaaacattaa-nnnnnnnnnnac |
533 |
Q |
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| T |
37615403 |
cccacttatatagactttctatgtagcttacataattgactggtattttgtaatattatattctaataccaaaattctaaacattaatttttttttttac |
37615304 |
T |
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| Q |
534 |
ataaccattccacattaatcattttgtttgactaaaagctctatagaaatatcatgcgggttcat |
598 |
Q |
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| T |
37615303 |
ataaccattccacattaatcattttgtttgact-aaagctctatagaaatatcatgcgggttcat |
37615240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 37615830 - 37615782
Alignment:
| Q |
17 |
acaaacctgtcaaaatcaattttaaggttggaatcttatttaacttccc |
65 |
Q |
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| T |
37615830 |
acaaacctgtcaaaatcaattttaaggttggaatcttatttaacttccc |
37615782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 384
Target Start/End: Complemental strand, 37624142 - 37623972
Alignment:
| Q |
214 |
taccttctcattgagagcaatggacttgatcgataatttactatgcataatccttgaacttgatttttgtagagataagatgcgtgattgataagtagaa |
313 |
Q |
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|||||| |||||||||||| |||| |||||||||| ||||| |||||| | || || ||||||||||||| ||||||| ||||| |||||||| ||| |
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| T |
37624142 |
taccttgtcattgagagcagtggaattgatcgatagtttacgatgcatgaaccctggttttgatttttgtagcaataagatccgtgaatgataagttgaa |
37624043 |
T |
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| Q |
314 |
gttctaaaattacaacgagcaaatgtgcttgtgagatatgaaactctaagttcagtaatagccattgtatt |
384 |
Q |
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| T |
37624042 |
gaccgggaattgcaacatgaaagtgcacttgtgagacatgaaactctaagttcagtaacaaccattgtatt |
37623972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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