View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_10 (Length: 312)
Name: NF7885_low_10
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 3232890 - 3233156
Alignment:
| Q |
19 |
aacaaagttataccaaccatgtggtgatgaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgag |
118 |
Q |
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| T |
3232890 |
aacaaagttataccaaccatgtggtgatgaaatattctttagtatatttttcggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgag |
3232989 |
T |
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| Q |
119 |
gtgggaaaacaatgtcatgacgacatgacaaaatatattttggcatcagaaaatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagttt |
218 |
Q |
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| T |
3232990 |
gtgggaaaacaatgtcatgacgacatgacaaaatatatttttgcatcagaaaatttcaagaagaaaaaaacttcaattttggaaaggagttggaaagttt |
3233089 |
T |
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| Q |
219 |
gggattcttgtgtctcttctttactaaatatccctcctgtagcagatccttatgtattttactcaat |
285 |
Q |
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| T |
3233090 |
gggattcttgtgtctcttctttactaaatatccctcctgtagcagatccttatgtatttaactcaat |
3233156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 3235476 - 3235704
Alignment:
| Q |
20 |
acaaagttataccaaccatgtggtgatgaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgagg |
119 |
Q |
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| T |
3235476 |
acaaaggtataccaaccatgtggtgatgagattttctttagtataaattttgggaatcaaacagttggtaaggaatgttgttttaaccttgtgaatgaag |
3235575 |
T |
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| Q |
120 |
tgggaaaacaatgtcatgacgacatgacaaaatatattttggcatcagaaaatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagtttg |
219 |
Q |
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| T |
3235576 |
tgggaaaacaatgtcatgatgacatgacaaaagctattttgacatcagaagattttaggaagagcaaaacttcaatattgaaaaggagtgcaaaagtttg |
3235675 |
T |
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| Q |
220 |
ggattcttgtgtctcttctttactaaata |
248 |
Q |
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| T |
3235676 |
ggattcttgtgtctcttctttactaaata |
3235704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 3258702 - 3258785
Alignment:
| Q |
37 |
atgtggtgatgaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggt |
120 |
Q |
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| T |
3258702 |
atgtggtgatgagattttctatactgtgttttctggtaatcaaacaactggtactgaatgttgttataaccttattaatgaggt |
3258785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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