View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_12 (Length: 291)
Name: NF7885_low_12
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 38250043 - 38249785
Alignment:
| Q |
14 |
aagaatataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaat |
113 |
Q |
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| T |
38250043 |
aagaaaataactataataaatccaacactaaaaactacttatgacttaaatttgatagaataagataagatactagagttctcaacaataatctacgaat |
38249944 |
T |
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| Q |
114 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249943 |
taaacacggcagcatatgtaatagcagaattaatgtttggacttcatccaattatatatgcagcaaccaaagttcctacctagcaaggcataacttcagc |
38249844 |
T |
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| Q |
214 |
attagtccgacacagacgaagagtatctgagtaggagataaagcgagggtaaaaaccac |
272 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249843 |
attagtccgacacaaacgaagagtatctgagtaggagataaagcgagggtaaaaaccac |
38249785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 38255139 - 38255036
Alignment:
| Q |
27 |
taataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaattaaacacggcagc |
126 |
Q |
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|||||||||||| | ||||||||||||||| |||||||| ||| | || |||||||| ||||||||| |||||||||| |||||| | |||||| |
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| T |
38255139 |
taataaatccaaaattaaaaactacttatgcattaaattt-----aatgaaataagatactacagttctcaataataatctaccgattaaagatggcagc |
38255045 |
T |
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| Q |
127 |
atatgtaat |
135 |
Q |
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|||| |||| |
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| T |
38255044 |
atatttaat |
38255036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 22178084 - 22177947
Alignment:
| Q |
25 |
tataataaatccaacactaaaaactacttatgacttaaatttgatagaataagattagatactagagttctcaacaataatctacaaattaaacacggca |
124 |
Q |
| |
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|||||||||||||| | ||||||||| ||||| |||||||| ||| | || |||||||| ||||||||| |||||||||| ||||||||| |||| |
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| T |
22178084 |
tataataaatccaaaattaaaaactatttatgcattaaattt-----aatgaaataagatactacagttctcaataataatctacgaattaaacatggca |
22177990 |
T |
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| Q |
125 |
gcatatgtaatagcagaattaat-gtttggacttcatccaatt |
166 |
Q |
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||||||| ||| ||| || |||| ||||||||| ||||||||| |
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| T |
22177989 |
gcatatgaaattgcaaaagtaatggtttggactccatccaatt |
22177947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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