View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_13 (Length: 289)
Name: NF7885_low_13
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 41703460 - 41703722
Alignment:
| Q |
1 |
tgaagtttttgtttgagtattatcatgtttggcaaatattaacatatatatctctttttggaccagctggtggaagtctgaaactggaaaatgagattga |
100 |
Q |
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| T |
41703460 |
tgaagtttttgtttgagtattatcatgtttggcaaatataaacatat----ctcttgttggaccagctggtggaagtctgaaactggaaaatgagattga |
41703555 |
T |
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| Q |
101 |
gatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcagtg |
200 |
Q |
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| T |
41703556 |
gatcataaaccatgacaacgacgatgatcaatctatctctagaggagtacatgaaaagaaagcatgttctggaatcaccgcaaatccatgttcatcagtg |
41703655 |
T |
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| Q |
201 |
gcactggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
267 |
Q |
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| T |
41703656 |
gcactggcaacacaacaagaaagcaaattttccaatgcagttgacagagtcaaaagaaaatcttctt |
41703722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 41467644 - 41467414
Alignment:
| Q |
48 |
atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggag |
147 |
Q |
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| T |
41467644 |
atatctctttttggaccagccggtggaagagtgaaactggaaaatgagattgagatcataaaccttg---acgatgatgatcaatctatgcctcaaggaa |
41467548 |
T |
|
| Q |
148 |
tacatgaaaagaaagcatgttctggaatcac---------cgcaaatccatgttcatcagtggcactggcaacacaacaagaaagcaaatttgccaatgc |
238 |
Q |
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| T |
41467547 |
tacatgaaaagaaagctagttttggaatcactgtgaagattgaagagccaagttcatcaggggccctgacaacccaacaaaaaagcaaatttggcaatgc |
41467448 |
T |
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| Q |
239 |
agttgacagagtcaaaagaaaattttcttccagc |
272 |
Q |
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| T |
41467447 |
agttgacactgtcaaaagaaaattttctttcagc |
41467414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 41513223 - 41513161
Alignment:
| Q |
205 |
tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
267 |
Q |
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| T |
41513223 |
tggcaacacaacaaaaaagcaaatttcccaatgcagttgacactgttaaaagaaaattttctt |
41513161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 41522158 - 41522096
Alignment:
| Q |
205 |
tggcaacacaacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttctt |
267 |
Q |
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| T |
41522158 |
tggcaacacaacaaaaaagcaaatttcccaatgcagttgacacttttaaaagaaaattttctt |
41522096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 41513381 - 41513268
Alignment:
| Q |
50 |
atctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacgacgatgatcaatctatctctagaggagta |
149 |
Q |
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| T |
41513381 |
atctctttttgtatcagctagtggaagagtgaaactggataagaatattgaggtcatataccttgacgacgacgatgttgggtctatgtctcgaggagta |
41513282 |
T |
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| Q |
150 |
catgaaaagaaagc |
163 |
Q |
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| T |
41513281 |
catgaaaagaaagc |
41513268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 41506970 - 41506911
Alignment:
| Q |
213 |
caacaagaaagcaaatttgccaatgcagttgacagagtcaaaagaaaattttcttccagc |
272 |
Q |
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|||||| ||| ||| ||||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
41506970 |
caacaaaaaaccaagtttgcaaatgcagttgacacggtcaaaagaaaattttctttcagc |
41506911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 33078232 - 33078159
Alignment:
| Q |
48 |
atatctctttttggaccagctggtggaagtctgaaactggaaaatgagattgagatcataaaccatgacaacga |
121 |
Q |
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| T |
33078232 |
atatctctttttgtaccagttggtggaagattgaaattgaaaaaggatatggaggtcataaaccttgacaacga |
33078159 |
T |
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