View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_14 (Length: 274)
Name: NF7885_low_14
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 33039687 - 33039566
Alignment:
| Q |
10 |
aagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatactatctcagttgagagtgtaatcatacatcaccaaggtaatc |
109 |
Q |
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| T |
33039687 |
aagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatactatctcagttgagagtgtaatcatacatcaccaaggttatc |
33039588 |
T |
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| Q |
110 |
atgtatttatttttctgcgttg |
131 |
Q |
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| T |
33039587 |
atgtatttatttttctgcgttg |
33039566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 33039533 - 33039424
Alignment:
| Q |
148 |
gtgctgatgattaagctatgcattgagacaatataataacaaaagtgtgtggtgtaggggaccaatttgtgcttgttttggagatttaaggtggtggagg |
247 |
Q |
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| T |
33039533 |
gtgctgatgattaagctatgcattgagacaatataataacaaaagtgtgtggtgtgggggaccaatttgtgcttgttttggagatttaaggtggtggagg |
33039434 |
T |
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| Q |
248 |
agcggcttct |
257 |
Q |
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| T |
33039433 |
agcggcttct |
33039424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 39953470 - 39953230
Alignment:
| Q |
11 |
agaatatatttaattgatta--aaaaccaaccatgtcacagaatttaaaatttctaatactatctcagttgagagtgtaatcatacatcaccaaggtaat |
108 |
Q |
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| T |
39953470 |
agaatatatttaattgattataaaaaccaatttagtcacagaatttaaaatttctaatactatctcagttgagagtgtaatcatgcatcaccaatgttat |
39953371 |
T |
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| Q |
109 |
catg-tatttatttttctgcgttgnnnnnnnnnnnn----accagtgctgatgattaagctatgcattgagacaatataataacaaaagtgtgtggtgta |
203 |
Q |
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| T |
39953370 |
catgttttttttttttctgcattgtatatactaatagtttattattaatgctgattaagctattcattgagacaatataataacaaa-gtgtgtggtgta |
39953272 |
T |
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| Q |
204 |
ggggaccaatttgtgcttgttttggagatttaaggtggtgga |
245 |
Q |
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| T |
39953271 |
ggggaccaatttgtacttgttttggagatttaaggtggtgga |
39953230 |
T |
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