View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_16 (Length: 242)
Name: NF7885_low_16
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_16 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 5373 - 5167
Alignment:
| Q |
18 |
aacagaacacgaagctaatacaatttcgtgttccatcgtgtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgctgac |
117 |
Q |
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| T |
5373 |
aacagaacacgaagctaatacaatttcgtgttccatcgtgtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgctgac |
5274 |
T |
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| Q |
118 |
atagttagacccacttatcatcctcctattcaccattcattttttgcactaaatggagttaaaaactacgaaggaacatcacaaccattacttgcaatcc |
217 |
Q |
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| T |
5273 |
atagttagacccacttatcatcctcctattcaccattcattttttgcactaaatggagttaaaaactacgaaggaacatcacaaccattacttgcaatcc |
5174 |
T |
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| Q |
218 |
aagtaac |
224 |
Q |
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||||||| |
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| T |
5173 |
aagtaac |
5167 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 15744156 - 15744358
Alignment:
| Q |
22 |
gaacacgaagctaatacaatttcgtgttccatcgtgtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgctgacatag |
121 |
Q |
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| T |
15744156 |
gaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcactatttgttcatgctgcagcagaaaataccagtgtcgatgacatca |
15744255 |
T |
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| Q |
122 |
ttagacccacttatcatcctcctattcaccattcattttttgcactaaatggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagt |
221 |
Q |
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| T |
15744256 |
ttggagccacgtatcatcctaaaattctccactcattttttccatttaacggagtgaaaaactacgaagggacatcaatgccattacttgcagtacaagt |
15744355 |
T |
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| Q |
222 |
aac |
224 |
Q |
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||| |
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| T |
15744356 |
aac |
15744358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 15190519 - 15190571
Alignment:
| Q |
172 |
ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaac |
224 |
Q |
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| T |
15190519 |
ggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaac |
15190571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 34174905 - 34174853
Alignment:
| Q |
172 |
ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaac |
224 |
Q |
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| T |
34174905 |
ggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaac |
34174853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 11969729 - 11969643
Alignment:
| Q |
138 |
tcctcctattcaccattcattttttgcactaaatggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaac |
224 |
Q |
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| T |
11969729 |
tcctcctattctccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaac |
11969643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 7399251 - 7399205
Alignment:
| Q |
178 |
aaaaactacgaaggaacatcacaaccattacttgcaatccaagtaac |
224 |
Q |
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| T |
7399251 |
aaaaactacgaagggacatcacaaccactacttgcagtacaagtaac |
7399205 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 8103297 - 8103229
Alignment:
| Q |
138 |
tcctcctattcaccattcattttttgcactaaatggagttaaaaactacgaaggaacatcacaaccatt |
206 |
Q |
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|||||| |||| | ||||||||| | |||| || ||| | |||||||||||||| |||||||||||||| |
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| T |
8103297 |
tcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcacaaccatt |
8103229 |
T |
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