View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_19 (Length: 215)
Name: NF7885_low_19
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3233402 - 3233188
Alignment:
| Q |
1 |
ttgacgtaataacatttgtcacaggaaaatattaagtgttaaacacaatgatcataggtgaaaaccaaaacaactatttatacaaagttttagtatttgt |
100 |
Q |
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| T |
3233402 |
ttgacgtaataacatttgtcataggaaaatattaagtgttaaacacaatgatcataggtgaaaaccaaaacaactatttatacaaagttttagtatatgt |
3233303 |
T |
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| Q |
101 |
tgatattccaaacataattccaacacttgcagcatnnnnnnnncaatttattagatatcaagttgtacaatcttttaaatttgcacgagatacctaatta |
200 |
Q |
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| T |
3233302 |
tgatattccaaacataattccaacacttgcagcataaaaaaaacaatttattagatatcaagttgtacaatcttttaaatttgcacgagatacctaatta |
3233203 |
T |
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| Q |
201 |
aagttaaatatgatc |
215 |
Q |
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||||||||||||||| |
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| T |
3233202 |
aagttaaatatgatc |
3233188 |
T |
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