View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7885_low_2 (Length: 603)
Name: NF7885_low_2
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Original strand, 38176409 - 38176983
Alignment:
| Q |
18 |
acctcctaaccacgaaccaaatcttagcggcttatcaaaactttaagttggcaaattcttctttaatttt-cagatgatagttttgtttgttattgttta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38176409 |
acctcctaaccacgaaccaaatcttagcggcttatcaaaactttaagttgacaaattcttctttaattttacagatgatagttttgtttgttattgttta |
38176508 |
T |
|
| Q |
117 |
caggatctgaagtcaaagactatatttgatcctggtatggagattaatttaaagaactaaaatat--atatattccaatcaaatgagaatggcaaaagta |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38176509 |
caggatctgaagtcaaatactatatttgatcctggtatggagattaatttaaagaactaacatatatatatattccaatcaaatgagaatggcaaaagta |
38176608 |
T |
|
| Q |
215 |
tgaattcatatttaattccaagccccaaccattcgtaattgacatatattgacataaaatggacaaataaaagaaaaaattgaatcgggaaatcatcgac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176609 |
tgaattcatatttaattccaagccccaaccaatcgtaattgacatatattgacataaagtggacaaataaaagaaaaaattgaatcgggaaatcatcgac |
38176708 |
T |
|
| Q |
315 |
ctagtaaaacatccaatgatttagtaacagaagcattattacaaaccagcttatacaatgactttaatttcttacaaacaacaaatgaacaagtcaatgt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38176709 |
ctagtaaaacatccaatgatttagtaacagaagcattattacaaaccagcttatacaatgactttaatttcttacaaacaacacatgaacaagtcaatgt |
38176808 |
T |
|
| Q |
415 |
actttgaatatcaacaaattaaactcgttcaaagtcatccataatgcagtttgaaacaactttgacaactgattgagaggcctcaagcaccaatctcctc |
514 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176809 |
attttgaatatcaacaaattaaactcgttcaaagtcatccataatgcagtttgaaacaactttgacaactgattgagaggcctcaagcaccaatctcctc |
38176908 |
T |
|
| Q |
515 |
ttcgtcctcttcatactcttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcat |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38176909 |
ttcgtcctcttcatactcttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcat |
38176983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 380 - 446
Target Start/End: Original strand, 37088550 - 37088617
Alignment:
| Q |
380 |
aatttcttacaaacaacaaatgaacaagtcaatgtactttgaata-tcaacaaattaaactcgttcaa |
446 |
Q |
| |
|
|||||| |||||||| || |||||||||||| |||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
37088550 |
aatttcatacaaacaccacatgaacaagtcagtgtattttgaatactcaacgaattaaactcgttcaa |
37088617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 589
Target Start/End: Original strand, 11731763 - 11731839
Alignment:
| Q |
513 |
tcttcgtcctcttcatactcttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcat |
589 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| || || | ||||||||| |
|
|
| T |
11731763 |
tcttcctcctcctcataatcttcttcgtcagcagttgcatcctggtattgctggtactcagcaacaagatcattcat |
11731839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 589
Target Start/End: Original strand, 53145937 - 53145995
Alignment:
| Q |
531 |
tcttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcat |
589 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
53145937 |
tcttcctcctcagctattgcatcctggtattgttggtactctgctaccaaatcgttcat |
53145995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 573
Target Start/End: Original strand, 45452349 - 45452385
Alignment:
| Q |
537 |
tcatcagcagtagcatcctggtattgctggtactctg |
573 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
45452349 |
tcatctgcagtagcatcttggtattgctggtactctg |
45452385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University