View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_20 (Length: 204)
Name: NF7885_low_20
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 35628302 - 35628125
Alignment:
| Q |
17 |
aatttgttttttggcatgtgaaaatttaaacttccattaaataaaattttgttacctatcattgtggttccatattgaggagttagaattttataaatat |
116 |
Q |
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| T |
35628302 |
aatttattttttggcatgtgaaaatttaaacttccattaaataaaattttgttacctatcattgtggttccatattgaggagttagaattttataaatat |
35628203 |
T |
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| Q |
117 |
gatcattaacattattaaaaaactagaggaacaattgttattaaaataaatt----gttcattgtgaaaatatatatt |
190 |
Q |
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| T |
35628202 |
gatcattaacattattaaaaaactagaggaacaattgttattaaaataaattgtacgttcattgtgaaaatatatatt |
35628125 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 55497746 - 55497786
Alignment:
| Q |
35 |
tgaaaatttaaacttccattaaataaaattttgttacctat |
75 |
Q |
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| T |
55497746 |
tgaaaaattaaacttccatgaaataaaattttgttacctat |
55497786 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 35318818 - 35318914
Alignment:
| Q |
38 |
aaatttaaacttccattaaataaaattttgttacctatcattgtggttccatattgaggagttagaattttataaatatgatcattaacattattaaaaa |
137 |
Q |
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| T |
35318818 |
aaatttaaacttacatgaaacaaaattttgttacctttaataatggttcca---tgaagagttaaaattccataaataagatcagtaacattgttaaaaa |
35318914 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 11814635 - 11814675
Alignment:
| Q |
97 |
agttagaattttataaatatgatcattaacattattaaaaa |
137 |
Q |
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| T |
11814635 |
agttaaaattttataaataagatcattaacattcttaaaaa |
11814675 |
T |
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