View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7885_low_4 (Length: 531)

Name: NF7885_low_4
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7885_low_4
NF7885_low_4
[»] chr1 (3 HSPs)
chr1 (19-415)||(34411834-34412212)
chr1 (247-300)||(33233623-33233676)
chr1 (60-116)||(34409249-34409305)
[»] chr4 (7 HSPs)
chr4 (230-316)||(49061705-49061791)
chr4 (241-299)||(49059857-49059915)
chr4 (230-304)||(52733757-52733830)
chr4 (235-287)||(44378277-44378329)
chr4 (230-269)||(32898095-32898134)
chr4 (230-304)||(2328696-2328770)
chr4 (244-302)||(25608792-25608850)
[»] chr5 (1 HSPs)
chr5 (209-290)||(40056398-40056479)
[»] scaffold0444 (1 HSPs)
scaffold0444 (235-287)||(828-880)
[»] chr3 (4 HSPs)
chr3 (235-290)||(25582625-25582680)
chr3 (230-320)||(18074570-18074660)
chr3 (230-290)||(9505177-9505237)
chr3 (230-286)||(28242611-28242667)
[»] chr7 (1 HSPs)
chr7 (249-290)||(28759453-28759494)
[»] chr6 (1 HSPs)
chr6 (230-287)||(17441185-17441242)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 34412212 - 34411834
Alignment:
Q  19 tctatatacccgtcagaaagaaattaatttcatgagctagctgtctatttggactcatgttctggcttaaaatatatggttgctcgagattggagtatag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34412212 tctatatacccgtcagaaagaaattaatttcatgagctagctgtctatttggactcatgttctggcttaacatatatggttgctcgagattggagtatag 34412113  T
Q  119 cgagaggggaatgaggtttaagaatatgcattggcttgaatcaacccatagactctagcatcggcaactaatcaagttgactcaaatatggtttggaatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||                  |||||||||||||||    
T  34412112 cgagaggggaatgaggtttaagaatatgcattggcttgaatcaatccatagactctagcgtcgacaa------------------atatggtttggaatt 34412031  T
Q  219 cgatttaaccgttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaacta 318  Q
    |||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34412030 cgatttaaccattaactcgttgaatttaattcatgaattaaatgagtttaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaacta 34411931  T
Q  319 taaatagttctattaatttaattcatgagttagatcgataaagacgtatttagaagtgaaagagtattttgaagaattcttaattccaattctagaa 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34411930 taaatagttctattaatttaattcatgagttagatcgataaagacgtatttagaagtgaaagagtattttgaagaattcttaattccaattctagaa 34411834  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 33233623 - 33233676
Alignment:
Q  247 attcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaa 300  Q
    ||||||||||||||||||||||| ||| | ||||||||||| || || ||||||    
T  33233623 attcatgaatcaaataagttgaacttgagctgaaaattaaggtcgttaactaaa 33233676  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34409305 - 34409249
Alignment:
Q  60 tgtctatttggactcatgttctggcttaaaatatatggttgctcgagattggagtat 116  Q
    ||||||||||||||||| |||||  |||| || |||||||||| |||| ||||||||    
T  34409305 tgtctatttggactcatattctgaattaacatgtatggttgcttgagagtggagtat 34409249  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 49061705 - 49061791
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaac 316  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| ||  || ||||| |||| |||| ||||||    
T  49061705 ttaattcgttgaatttaattcatgaatcaaataagttgaatttaagttgaaaattaaatttgttaactaattaagctaaacttgaac 49061791  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 49059857 - 49059915
Alignment:
Q  241 aatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaa 299  Q
    ||||||||||||||| ||||||||||||||||  | ||||||||||||||||| |||||    
T  49059857 aatttaattcatgaaccaaataagttgaattttagctgaaaattaagttcattaactaa 49059915  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 52733757 - 52733830
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataag 304  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||||||| || | ||||||||    
T  52733757 ttaactcgttgaatttaattcatgaaccaaatgagttgaa-ttgagctgaaaattaagttcgttaaataaataag 52733830  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 44378329 - 44378277
Alignment:
Q  235 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 287  Q
    |||||||| ||  |||||||| ||||| |||||||||||||||||||||||||    
T  44378329 tcgttgaacttggttcatgaaccaaatgagttgaatttgggttgaaaattaag 44378277  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 32898134 - 32898095
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaa 269  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  32898134 ttaactcgttgaatttaatttatgagtcaaataagttgaa 32898095  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 2328770 - 2328696
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataag 304  Q
    ||||||||||||| ||||||||| ||| |||||| ||||||||  ||||||| ||||| |  |||| ||||||||    
T  2328770 ttaactcgttgaagttaattcataaattaaataaattgaatttaagttgaaagttaagcttgttcattaaataag 2328696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 25608850 - 25608792
Alignment:
Q  244 ttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaata 302  Q
    ||||||||| |||||||| |||| |||||| | ||||||||||||||||| | ||||||    
T  25608850 ttaattcattaatcaaatgagtttaatttgagctgaaaattaagttcattaattaaata 25608792  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 40056398 - 40056479
Alignment:
Q  209 gtttggaattcgatttaaccgttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 290  Q
    ||||| |||||||||  ||  ||| ||||||||||||  |||||||| |||||||||| |||||| | ||||||||||||||    
T  40056398 gtttgaaattcgattcgacaattatctcgttgaatttggttcatgaaccaaataagttaaatttgagatgaaaattaagttc 40056479  T

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Target: scaffold0444 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 828 - 880
Alignment:
Q  235 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 287  Q
    |||||||| ||  |||||||| ||||| |||||||||||||||||||||||||    
T  828 tcgttgaacttggttcatgaaccaaatgagttgaatttgggttgaaaattaag 880  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Original strand, 25582625 - 25582680
Alignment:
Q  235 tcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 290  Q
    ||||| ||||| |||||| |||||||| | ||||||||| ||||||||||||||||    
T  25582625 tcgttaaatttgattcataaatcaaatgaattgaatttgagttgaaaattaagttc 25582680  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 18074660 - 18074570
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttcattcactaaataaggtaaaattgaactata 320  Q
    |||| |||||||||||  ||||||||  |||| |||||||||||   |||||||||||||| || ||||||| || | ||||||| |||||    
T  18074660 ttaattcgttgaatttgtttcatgaactaaatgagttgaatttgaactgaaaattaagttcgttaactaaatgagctgaaattgagctata 18074570  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 9505177 - 9505237
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaagttc 290  Q
    ||||||||||||| ||  |||||||| ||||| ||||||| ||| | ||||||||||||||    
T  9505177 ttaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttc 9505237  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 28242667 - 28242611
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaa 286  Q
    ||||||||||||||||  |||||||| ||||| || |||||||| | ||||||||||    
T  28242667 ttaactcgttgaatttggttcatgaaccaaatgagctgaatttgagctgaaaattaa 28242611  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 28759453 - 28759494
Alignment:
Q  249 tcatgaatcaaataagttgaatttgggttgaaaattaagttc 290  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  28759453 tcatgaatcaaatgggttgaatttgagttgaaaattaagttc 28759494  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 17441242 - 17441185
Alignment:
Q  230 ttaactcgttgaatttaattcatgaatcaaataagttgaatttgggttgaaaattaag 287  Q
    |||| |||||||| ||| |||||||| ||||| ||||||| ||| |||||||||||||    
T  17441242 ttaattcgttgaacttagttcatgaaccaaatgagttgaacttgagttgaaaattaag 17441185  T

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