View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7885_low_5 (Length: 463)

Name: NF7885_low_5
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7885_low_5
NF7885_low_5
[»] chr4 (14 HSPs)
chr4 (349-444)||(27554096-27554191)
chr4 (73-278)||(27445117-27445332)
chr4 (78-168)||(27526438-27526530)
chr4 (100-168)||(27498133-27498201)
chr4 (369-435)||(27431871-27431937)
chr4 (360-434)||(27556962-27557037)
chr4 (78-145)||(27476432-27476501)
chr4 (78-168)||(27514099-27514191)
chr4 (73-166)||(27516927-27517020)
chr4 (366-432)||(27503432-27503499)
chr4 (366-436)||(27524031-27524102)
chr4 (366-439)||(27514400-27514474)
chr4 (73-114)||(27570383-27570424)
chr4 (100-168)||(27473614-27473682)
[»] chr5 (1 HSPs)
chr5 (73-141)||(1754558-1754626)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 27554191 - 27554096
Alignment:
Q  349 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtacc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554191 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtacc 27554096  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 27445117 - 27445332
Alignment:
Q  73 tttgagttggttctaaatgcttttagtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggctat- 171  Q
    |||||||||||||| |||||||  |||||| ||||||||||||||||| ||||||||  |||||||| |||||  || ||| || ||||||||| | ||     
T  27445117 tttgagttggttcttaatgcttgcagtcattaatatatatagatgaaaggatatgtaataaacagtcagcaacttgaatgatcaatgaaggaggaccatg 27445216  T
Q  172 --------------tggcagccatagaacctaagggagacaagagcatataatagatcagtcacatggtattgtcttagatgattttctctcaattttct 257  Q
                  ||| ||||||||||| ||||||||||||   ||||||||||||||    |||||| ||||||||||||||||||||  |||||||     
T  27445217 agattgggagtcaatgggagccatagaacttaagggagacaatgacatataatagatca----catggtgttgtcttagatgattttctc-aaattttca 27445311  T
Q  258 acgtcaaatgtcataataata 278  Q
    || ||||||||||||||||||    
T  27445312 acatcaaatgtcataataata 27445332  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 27526438 - 27526530
Alignment:
Q  78 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 168  Q
    |||||| ||||||||||||  || ||||||||||||||||||||| |||||||| ||||||||||||||| | | ||| ||||||||||||||    
T  27526438 gttggtgctaaatgcttttgcagccatgaatatatatagatgaaaggatatgtaacaaacagtcggcaactatagtgatcagtgaaggagggc 27526530  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 27498201 - 27498133
Alignment:
Q  100 catgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 168  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||| |   ||| ||||||||||||||    
T  27498201 catgaatatatatagatgaaaggatatgtaacaaacagtcggcaactattgtgatcagtgaaggagggc 27498133  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
Q  369 taccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaa 435  Q
    ||||||||||| |||||||||||||| |||||||||||||| | |  ||||||| ||||||||||||    
T  27431871 taccagctggacatcaacattatcaagatgaagaaacatgtataatgcatgtttacaaaattatgaa 27431937  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 27557037 - 27556962
Alignment:
Q  360 ataataacttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatga 434  Q
    ||||| |||||||||||||| ||||||| ||||| ||||||| |||||||||| |  ||||||| |||||||||||    
T  27557037 ataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 27476501 - 27476432
Alignment:
Q  78 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaac 145  Q
    |||||| ||||||||||||  |||||  ||||||||||||||||| ||||| || |||||||||||||||    
T  27476501 gttggtgctaaatgcttttgcagtcaataatatatatagatgaaaggatatttaacaaacagtcggcaac 27476432  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 27514099 - 27514191
Alignment:
Q  78 gttggttctaaatgctttt--agtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 168  Q
    |||||| ||||||||||||  || | | ||||||||||||||||| |||||||| ||||||||||||| | | | ||| || |||||||||||    
T  27514099 gttggtgctaaatgcttttgcagcctttaatatatatagatgaaaggatatgtaacaaacagtcggcagctacaatgatcaatgaaggagggc 27514191  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 27516927 - 27517020
Alignment:
Q  73 tttgagttggttctaaatgcttttagtcatgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagg 166  Q
    |||| |||||| ||||||||||  || ||||||||||||||||||||  ||||  || ||||| ||||||||| | | ||| ||||||||||||    
T  27516927 tttgtgttggtgctaaatgcttgcagccatgaatatatatagatgaacggatacttaacaaaccgtcggcaactataatgatcagtgaaggagg 27517020  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 27503432 - 27503499
Alignment:
Q  366 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattat 432  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||| |  ||||||| |||||||||    
T  27503432 acttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 27524031 - 27524102
Alignment:
Q  366 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag 436  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||||| |  ||||||| | |||||||||||    
T  27524031 acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag 27524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 27514400 - 27514474
Alignment:
Q  366 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtac 439  Q
    |||||| ||||||| |||| |||||||| |||| ||||| ||||||| |  ||||||| ||||||||||||||||    
T  27514400 acttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtac 27514474  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 27570383 - 27570424
Alignment:
Q  73 tttgagttggttctaaatgcttttagtcatgaatatatatag 114  Q
    |||| |||||||||||||||||  ||||||||||||||||||    
T  27570383 tttgtgttggttctaaatgcttgcagtcatgaatatatatag 27570424  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 27473682 - 27473614
Alignment:
Q  100 catgaatatatatagatgaaatgatatgtagcaaacagtcggcaacaagattgaacagtgaaggagggc 168  Q
    ||||||||||||||||||||| ||||  ||||||||  |||||||| | | ||| ||||||| ||||||    
T  27473682 catgaatatatatagatgaaaggatacttagcaaaccatcggcaactataatgatcagtgaatgagggc 27473614  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 1754558 - 1754626
Alignment:
Q  73 tttgagttggttctaaatgcttttagtcatgaatatatatagatgaaatgatatgtagcaaacagtcgg 141  Q
    |||| |||||| ||||||||||  || ||||| ||||||||||||||| | || ||| |||||||||||    
T  1754558 tttgtgttggtcctaaatgcttcaaggcatgactatatatagatgaaaggttaagtaacaaacagtcgg 1754626  T

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