View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_7 (Length: 375)
Name: NF7885_low_7
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 38927465 - 38927112
Alignment:
| Q |
1 |
cgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatc |
100 |
Q |
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| T |
38927465 |
cgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcatc |
38927366 |
T |
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| Q |
101 |
aaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatat |
200 |
Q |
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| T |
38927365 |
aaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaatat |
38927266 |
T |
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| Q |
201 |
tggatgtggagtgatgagtacatgtttcatgcaagcattagtggaccgcaaggaaaagccggttgaaattctgaagatcacagctattggattttctaac |
300 |
Q |
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| T |
38927265 |
tggatgtggagtgatgagtacatgtttcatgcaagcattagtagaccgcaaggaaaagccggttgaaattctgaagatcacagctattggattttctaac |
38927166 |
T |
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| Q |
301 |
aaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttg |
354 |
Q |
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| T |
38927165 |
aaggctaagttagaagaaattggcaaaagtttaatgagttttgctgaatccttg |
38927112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
94 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
162 |
Q |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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