View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_8 (Length: 339)
Name: NF7885_low_8
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 40553423 - 40553747
Alignment:
| Q |
1 |
atgcatccttttctggttcatttgagtcacaatattaaatataattgtttatgtaattgacattatctggtttatacaacagttgtttggacagagtatt |
100 |
Q |
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| T |
40553423 |
atgcatccttttctggttcatttgagtcacaatattaaatataattgtttatgtaattgacattatctggtttatacaacagttgtttggacagagtatt |
40553522 |
T |
|
| Q |
101 |
cactcgaaaggataatcatgtgttaatattagccttacagattgttgagttaatccttcagaag---ttttcagacaagttcataaagttgttaattgag |
197 |
Q |
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| T |
40553523 |
cactcgaaaggataatcatgtgttaatattagccttacagattgttgagttaatccttcagaagtttttttcagacaagttcataaagttgtttattgag |
40553622 |
T |
|
| Q |
198 |
gaaggtgtctattttgccataagtcactttcatcacctgggaaaacatcttcacgattgaatttccgtgaaaactctcattcaagagttgagtgtccatg |
297 |
Q |
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| T |
40553623 |
gaaggtgtctattttgccataagtcactttcatcacctgggaaaacatcttcacgattgaatttccgtgaaaactctcattcaagagttgagtgtccatg |
40553722 |
T |
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| Q |
298 |
ttatgcattttcttatggcctatct |
322 |
Q |
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| T |
40553723 |
ttatgcattttcttatggcctatct |
40553747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 28777425 - 28777312
Alignment:
| Q |
56 |
attgacattatctggtttatacaacagttgtttggacagagtattcactcgaaaggataatcatgtgttaatattagccttacagattgttgagttaatc |
155 |
Q |
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| T |
28777425 |
attgactttatctggttaatgtgacagttttttggctggagttttcactcggaaggatcatcatatgataatgttagccttacagattgctgagataatc |
28777326 |
T |
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| Q |
156 |
cttcagaagttttc |
169 |
Q |
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| T |
28777325 |
cttcaaaatttttc |
28777312 |
T |
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