View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7885_low_9 (Length: 338)
Name: NF7885_low_9
Description: NF7885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7885_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 22751646 - 22751963
Alignment:
| Q |
1 |
taagataaggacccacataagaagccaatgtgttaacaaatgccaaaatagctgttaaaagaatctctttccgcgctgagaatgctaatgtcttcactag |
100 |
Q |
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| T |
22751646 |
taagataaggacccacataagaagccaatgtgttgacaaatgccaaaatagctgttaaaagaatctctttccgcgctgagaatgctaatgtcttcactag |
22751745 |
T |
|
| Q |
101 |
cttaaatgtggtcactttgttgatgtcgtcgccacaatatgcctcaagcttatccttaaaatatggaaaagctccaaataaactgtcttttctgtcgagg |
200 |
Q |
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| T |
22751746 |
cttaaatgtggtcactttgttgatgtcgtcgccacaatatgcctcaagcttatccttaaaatatggaaaagctccaaataaactgtcttttctgtcgagg |
22751845 |
T |
|
| Q |
201 |
tgtggaacatcttcaaggtctaaagttttcctttttccaacagaaattagtggaccgacccaatagaatgtaagaatgctgaaaattccagcattagagt |
300 |
Q |
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| T |
22751846 |
tgtggaacatcttcaaggtctaaagttttcctttttccaacagaaattagtggaccgacccaatagaatgtaagaatgctgaaaattccagcattagagt |
22751945 |
T |
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| Q |
301 |
aaggagtaacggtgtcaa |
318 |
Q |
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| T |
22751946 |
aaggagtaacggtgtcaa |
22751963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41452938 - 41453018
Alignment:
| Q |
1 |
taagataaggacccacataagaagccaatgtgttaacaaatgccaaaatagctgttaaaagaatctctttccgcgctgaga |
81 |
Q |
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||||||||||||| ||||||||||| || ||||| | ||||| | || ||| || |||||||||||||||| | |||||| |
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| T |
41452938 |
taagataaggaccaacataagaagcaaaagtgtttaataatgcaagaaaagcagtaaaaagaatctctttccaccctgaga |
41453018 |
T |
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