View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7886_low_1 (Length: 1265)
Name: NF7886_low_1
Description: NF7886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7886_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 537 - 1128
Target Start/End: Original strand, 46031978 - 46032566
Alignment:
| Q |
537 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttacgctttcctcgaacatccaggaccttaaaaggttcgct |
636 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46031978 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttactctttcctcgaacatccaggaccttaaaaggttcgct |
46032077 |
T |
|
| Q |
637 |
tctaccttcccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactca |
736 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032078 |
tctaccttctcgaatgcacactccaattgaattagattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactca |
46032177 |
T |
|
| Q |
737 |
atatctttgtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgag |
836 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032178 |
atctctttgtcgatatcagcaactcca---tttcttagtgtaatgaattcgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgag |
46032274 |
T |
|
| Q |
837 |
tattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctcttccatgactacgcgttg |
936 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032275 |
tattaaattcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctcttccatgactacgcgttg |
46032374 |
T |
|
| Q |
937 |
ctgattttcaacatcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgtttggcaatttgttcatgaaa |
1036 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46032375 |
ctgattttcaacatcacgcagttcaatttgaagtggttcatctccctcagctttgatggtggacttagtgaaaattctgtttggcaatttgttcatgaaa |
46032474 |
T |
|
| Q |
1037 |
cagaattgcaaacgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaat |
1128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46032475 |
cagaattgcaaacgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaat |
46032566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 46031454 - 46031896
Alignment:
| Q |
19 |
gaaaagtcacctccacaaccttaaaaattgcattaaagacaaggaacgatattggtcgttcagttgtgtaatagctgtagcgctcatcatcatcatctac |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
46031454 |
gaaaagtcacctccacaaccttataaattgcattaaagacaaggaacgatattggttgttcagttgagtaatagatgtagcgctcatcatcattgtctac |
46031553 |
T |
|
| Q |
119 |
atcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccnnnnnnntcatatacaacatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46031554 |
atcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccaaaaaaatcatatacaacatt |
46031653 |
T |
|
| Q |
219 |
aatgtcaaaagtatcaaacaaccaaataaagaatcataataccacacataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46031654 |
aatgtcaaaagtatcaaacaaccaaataaagaatcataataccacacataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcatt |
46031753 |
T |
|
| Q |
319 |
ggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatccctttcagacgccat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46031754 |
ggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatccctttcagacgccat |
46031853 |
T |
|
| Q |
419 |
acctcatcattcaacgatggacgatcgtgtttctcgtaatctg |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46031854 |
acctcatcattcaacgatggacgatcgtgtttctcgtaatctg |
46031896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 547 - 1135
Target Start/End: Original strand, 46019314 - 46019910
Alignment:
| Q |
547 |
atatacattttttaaa-actaattactaacatttgtcggaggtttaggac-ttacgctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
644 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46019314 |
atatacattttttaacgattaattactaaagtttgtcggagatttaggaccttaccctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
46019413 |
T |
|
| Q |
645 |
cccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatcttt |
744 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| | |
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|
| T |
46019414 |
cccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctctttgatatatctgtaaactcaatctctat |
46019513 |
T |
|
| Q |
745 |
gtcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaat |
844 |
Q |
| |
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|| |||||||||||||||| |||||||||||||||| ||| |||||||||| |||| | ||||||| ||||||||||| |||||||||||||||| |
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| T |
46019514 |
gttgatatcagcaactcca---tttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactcttggaggtacaatttgagtattaaac |
46019610 |
T |
|
| Q |
845 |
tcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatggaggaaccctcttccatgactacgcgttgctgatttt |
944 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| |
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|
| T |
46019611 |
tcctcagctgtccaatcctctttttcaaagtcaccatataggacacataattggatcttcatcgaggaaccttcttccctgactatgcgttgctgatttc |
46019710 |
T |
|
| Q |
945 |
caacatcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgtttggcaatttgttcatgaaacagaattg |
1044 |
Q |
| |
|
|| |||||||||||||||||||||| ||| ||||||||||||||||||| |||| | ||||||||| | | |||| ||||||||||||||| ||||| |
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|
| T |
46019711 |
cagcatcacgcagttcaatttgaagcggttcatctccctcagctttgatttcggacattgtgaaaattgtttcaggcattttgttcatgaaacacaattg |
46019810 |
T |
|
| Q |
1045 |
caaacgtctccttc---caaatgtgttggaca------taagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaattttgctt |
1135 |
Q |
| |
|
|||||||||||| | || ||||||||| || |||| ||||||||||| ||||||| ||||| |||||| ||| |||| |||| ||||||||| |
|
|
| T |
46019811 |
caaacgtctcctcctctcatatgtgttggccaactcgttaagggtcaatccacagctaaattagaaacacaaacaactatcaatacaattgattttgctt |
46019910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 266 - 457
Target Start/End: Original strand, 46019065 - 46019256
Alignment:
| Q |
266 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
365 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||||||||| |
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|
| T |
46019065 |
ataatatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatcca |
46019164 |
T |
|
| Q |
366 |
atgccaacagcttgtcaagtggaccatttttacgtatccctttcagacgccatacctcatcattcaacgatggacgatcgtgtttctcgtaa |
457 |
Q |
| |
|
| |||||| |||||||||||| |||| | ||||||| ||| ||||||||||||||| ||||||||| |||||||||||| | ||||||||| |
|
|
| T |
46019165 |
aggccaactgcttgtcaagtgttccatctctacgtattcctctcagacgccataccttatcattcaatgatggacgatcgcgcttctcgtaa |
46019256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 46018813 - 46018988
Alignment:
| Q |
19 |
gaaaagtcacctccacaaccttaaaaattgcattaaagacaaggaacgatattggtcgttcagttgtgtaatagctgtagcgctcatcatcatcatctac |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||| |||| ||| |||||| |||||| | ||||||||||||| |
|
|
| T |
46018813 |
gaaaagtcacctccacaacctttaaaattgaattaaagacaagggaggatattggttgttctgttacataatagatgtagcac---ccatcatcatctac |
46018909 |
T |
|
| Q |
119 |
atcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagcc |
197 |
Q |
| |
|
|||||||| |||||||||||||| |||| | |||||| | |||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
46018910 |
atcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagcc |
46018988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1192 - 1249
Target Start/End: Original strand, 6423413 - 6423470
Alignment:
| Q |
1192 |
catccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctgg |
1249 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6423413 |
catccgaagcataaggataatcctcaatcaaaaggcgaatgccgtgtggtgaagctgg |
6423470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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