View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7886_low_3 (Length: 548)

Name: NF7886_low_3
Description: NF7886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7886_low_3
NF7886_low_3
[»] chr5 (6 HSPs)
chr5 (440-530)||(39696275-39696365)
chr5 (69-121)||(39696499-39696551)
chr5 (22-76)||(39696562-39696616)
chr5 (313-374)||(19142992-19143053)
chr5 (313-374)||(41014343-41014404)
chr5 (155-221)||(39696403-39696467)
[»] chr3 (6 HSPs)
chr3 (313-374)||(6411871-6411932)
chr3 (312-374)||(47624087-47624149)
chr3 (313-374)||(22609812-22609873)
chr3 (313-374)||(40272861-40272923)
chr3 (313-374)||(26869753-26869814)
chr3 (329-374)||(54484754-54484799)
[»] chr7 (10 HSPs)
chr7 (313-374)||(11617637-11617699)
chr7 (313-374)||(33871959-33872020)
chr7 (312-364)||(6736913-6736965)
chr7 (313-374)||(7879662-7879724)
chr7 (313-374)||(23419723-23419785)
chr7 (313-370)||(32233188-32233245)
chr7 (313-374)||(38604551-38604612)
chr7 (313-374)||(48735171-48735231)
chr7 (330-374)||(42476913-42476957)
chr7 (329-373)||(42798710-42798754)
[»] chr2 (3 HSPs)
chr2 (313-374)||(32781337-32781399)
chr2 (313-374)||(12023968-12024029)
chr2 (313-374)||(36871517-36871578)
[»] scaffold0258 (1 HSPs)
scaffold0258 (313-374)||(13073-13134)
[»] chr8 (5 HSPs)
chr8 (329-374)||(2626563-2626608)
chr8 (313-374)||(13160726-13160787)
chr8 (313-374)||(45071289-45071350)
chr8 (313-374)||(44530173-44530235)
chr8 (313-374)||(12625913-12625976)
[»] chr4 (6 HSPs)
chr4 (313-374)||(5648283-5648344)
chr4 (313-370)||(40915853-40915910)
chr4 (313-372)||(6430677-6430736)
chr4 (313-374)||(20225008-20225068)
chr4 (313-374)||(49796822-49796883)
chr4 (310-374)||(54175085-54175150)
[»] chr1 (5 HSPs)
chr1 (313-374)||(11596560-11596621)
chr1 (313-374)||(32632606-32632667)
chr1 (313-374)||(46248002-46248064)
chr1 (313-374)||(31382263-31382324)
chr1 (329-374)||(41319855-41319900)
[»] scaffold0057 (1 HSPs)
scaffold0057 (330-374)||(43699-43743)


Alignment Details
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 530
Target Start/End: Complemental strand, 39696365 - 39696275
Alignment:
Q  440 gtcttgaatagctgtatgattaatcctggtgagaatgaagcattagttcgacatgcttcggataaatacaaatatttgtctttggcaccac 530  Q
    ||||| ||||| |||| ||| |||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |||| ||||||||||    
T  39696365 gtcttcaatagttgtacgataaatcctggcgagaatgaagcattagttcgatatgctttggataagtacaaatatctgtcattggcaccac 39696275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 39696551 - 39696499
Alignment:
Q  69 tattgtttggaatctgttccaggcttgcagccaaactgtaggcacagcatcat 121  Q
    |||| ||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  39696551 tattatttggaatctgttacaggcttgcagccaaactgtatgtacagcatcat 39696499  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 39696616 - 39696562
Alignment:
Q  22 ctgctaaatgctaattgttttattttgtaattgcttgaaatatattctattgttt 76  Q
    ||||||| ||||||||||||||||||| ||| | |||||||||||| ||||||||    
T  39696616 ctgctaattgctaattgttttattttgcaatggtttgaaatatattttattgttt 39696562  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 19143053 - 19142992
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||||| |||||| |  |||||| ||||||||||| |||||||||    
T  19143053 aaacaacctcttgtgtaaaaacagggtaaggctgcgtacagtacaccaaatggtgggacccc 19142992  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 41014343 - 41014404
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  41014343 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 41014404  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 39696467 - 39696403
Alignment:
Q  155 aattatctcggggtttgttgtgtgtcaaaatgctgcactcaaaccgacatgttatgtatgggtggag 221  Q
    |||||||| |||||||||| ||||||||  |||||||||||||||||  || ||| |||||||||||    
T  39696467 aattatcttggggtttgttatgtgtcaa--tgctgcactcaaaccgatgtgctatatatgggtggag 39696403  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 6411932 - 6411871
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  ||||||||||||||||||||||||||||    
T  6411932 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatgatgggacccc 6411871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 47624087 - 47624149
Alignment:
Q  312 aaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    |||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  47624087 aaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 47624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 22609812 - 22609873
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  22609812 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 22609873  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 40272923 - 40272861
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||| || |||||| |  |||||||||||||||||| |||||||||    
T  40272923 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 40272861  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 26869753 - 26869814
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||| | ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  26869753 aaacagcctctggtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 26869814  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 54484754 - 54484799
Alignment:
Q  329 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    |||||||||||||| |  |||||||||||||||||| |||||||||    
T  54484754 aaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 54484799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 11617699 - 11617637
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  11617699 aaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 11617637  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 33872020 - 33871959
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||||| | |||| |  |||||||||||||||||| |||||||||    
T  33872020 aaacaacctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggacccc 33871959  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 6736913 - 6736965
Alignment:
Q  312 aaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatg 364  Q
    ||||||||||||||  |||||||||||||||||  | ||||||||||||||||    
T  6736913 aaaacaacctcttgtataaaaacaaggtaagactgcatacaatacaccaaatg 6736965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 7879662 - 7879724
Alignment:
Q  313 aaacaacctcttgagtaaaa-acaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    |||||| |||||| |||||| |||||||||| |  |||||||||||||||||| |||||||||    
T  7879662 aaacaatctcttgtgtaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 7879724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 23419785 - 23419723
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  23419785 aaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 23419723  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 32233245 - 32233188
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatggga 370  Q
    ||||||||||||| ||||||||| |||||| || |||| | ||||||||||| |||||    
T  32233245 aaacaacctcttgtgtaaaaacagggtaaggcagcgtatattacaccaaatggtggga 32233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 38604551 - 38604612
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| || ||||||    
T  38604551 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgagacccc 38604612  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 48735231 - 48735171
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| |||||| || |||||| |  |||||||||||||||||| |||||||||    
T  48735231 aaacaacctcttgtgtaaaa-cacggtaaggctgcgtacaatacaccaaatggtgggacccc 48735171  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 42476913 - 42476957
Alignment:
Q  330 aaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||    
T  42476913 aaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 42476957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 42798710 - 42798754
Alignment:
Q  329 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggaccc 373  Q
    |||||||||||||| |  |||||||||||||||||| ||||||||    
T  42798710 aaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccc 42798754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 32781399 - 32781337
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  32781399 aaacaacctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 32781337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 12024029 - 12023968
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  12024029 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 12023968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 36871517 - 36871578
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| || |||||| |||||| |  |||||||||||||||||| |||||||||    
T  36871517 aaacagcctcttgtgtgaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 36871578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 13134 - 13073
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| |||||||||||||||| |  ||||||||||||| |||| |||||||||    
T  13134 aaacagcctcttgcgtaaaaacaaggtaaggctgcgtacaatacaccgaatggtgggacccc 13073  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 2626563 - 2626608
Alignment:
Q  329 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||    
T  2626563 aaaaacagggtaagactgcgtacaatacaccaaatgatgggacccc 2626608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 13160726 - 13160787
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  13160726 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 13160787  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 45071289 - 45071350
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  45071289 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 45071350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 44530173 - 44530235
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||| || |||||| |  |||||||||||||||||| |||||||||    
T  44530173 aaacaacctcttgtgtaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 44530235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 12625913 - 12625976
Alignment:
Q  313 aaacaacctcttgagtaaaaa--caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| |||||||  || ||||||||  | |||||||||||||||| |||||||||    
T  12625913 aaacaacctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggacccc 12625976  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 5648283 - 5648344
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  5648283 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 5648344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 40915853 - 40915910
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatggga 370  Q
    ||||| ||||||| |||||||||||||||| |  |||||||||||||||||| |||||    
T  40915853 aaacagcctcttgtgtaaaaacaaggtaaggctgcgtacaatacaccaaatggtggga 40915910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 6430736 - 6430677
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacc 372  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||    
T  6430736 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacc 6430677  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 20225008 - 20225068
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| |||||| || |||||| |  |||||||||||||||||| |||||||||    
T  20225008 aaacaacctcttgtgtaaaa-cagggtaaggctgcgtacaatacaccaaatggtgggacccc 20225068  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 49796822 - 49796883
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| || |||||| |||||| |  |||||||||||||||||| |||||||||    
T  49796822 aaacagcctcttgtgttaaaacatggtaaggctgcgtacaatacaccaaatggtgggacccc 49796883  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 54175085 - 54175150
Alignment:
Q  310 ggaaaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacacc-aaatgatgggacccc 374  Q
    |||||||| ||||||| ||||||||| |||||| |  ||||||||||||| ||||| |||||||||    
T  54175085 ggaaaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaaatggtgggacccc 54175150  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 11596560 - 11596621
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| ||||||||| |||||| |  |||| ||||||||||||| |||||||||    
T  11596560 aaacaacctcttgtgtaaaaacagggtaaggctgcgtataatacaccaaatggtgggacccc 11596621  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 32632667 - 32632606
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| |||||| |  |||||||||||||||||| |||||||||    
T  32632667 aaacagcctcttgtgtaaaaacagggtaaggctgcgtacaatacaccaaatggtgggacccc 32632606  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 46248064 - 46248002
Alignment:
Q  313 aaacaacctcttgagtaaaaa-caaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  46248064 aaacagcctcttgtgtaaaaaacagggtaagactgcgtacaatacaccaaatggtgggacccc 46248002  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 31382324 - 31382263
Alignment:
Q  313 aaacaacctcttgagtaaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||| ||||||| ||||||||| | |||| |  |||||||||||||||||| |||||||||    
T  31382324 aaacagcctcttgtgtaaaaacaggataaggctgcgtacaatacaccaaatggtgggacccc 31382263  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 41319900 - 41319855
Alignment:
Q  329 aaaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  41319900 aaaaacagggtaaggctgcgtacaatacaccaaatgatgggacccc 41319855  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 43699 - 43743
Alignment:
Q  330 aaaacaaggtaagacatcgtacaatacaccaaatgatgggacccc 374  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||    
T  43699 aaaacaaggtaaggctgcgtacaatacaccaaatggtgggacccc 43743  T

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