View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7886_low_4 (Length: 543)

Name: NF7886_low_4
Description: NF7886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7886_low_4
NF7886_low_4
[»] chr3 (19 HSPs)
chr3 (90-532)||(50246408-50246871)
chr3 (214-428)||(2765956-2766168)
chr3 (426-531)||(2765829-2765934)
chr3 (5-92)||(50247535-50247622)
chr3 (260-424)||(20919286-20919447)
chr3 (260-424)||(20928248-20928409)
chr3 (428-528)||(20783856-20783956)
chr3 (258-403)||(37197845-37197989)
chr3 (428-528)||(38353659-38353759)
chr3 (303-411)||(9270699-9270806)
chr3 (431-528)||(37198036-37198131)
chr3 (365-422)||(20795286-20795343)
chr3 (317-422)||(30160553-30160658)
chr3 (303-399)||(6440819-6440915)
chr3 (300-411)||(37187498-37187608)
chr3 (67-171)||(5574053-5574159)
chr3 (300-405)||(6445124-6445227)
chr3 (300-411)||(44907753-44907867)
chr3 (396-425)||(20783976-20784005)
[»] chr8 (32 HSPs)
chr8 (216-532)||(45250812-45251142)
chr8 (214-532)||(8362287-8362622)
chr8 (208-428)||(18666767-18666986)
chr8 (214-428)||(23689087-23689299)
chr8 (426-533)||(18667028-18667135)
chr8 (428-528)||(8351377-8351477)
chr8 (432-528)||(17890704-17890800)
chr8 (428-528)||(35136893-35136993)
chr8 (432-526)||(19742760-19742854)
chr8 (428-528)||(25064159-25064259)
chr8 (299-429)||(23160990-23161118)
chr8 (299-411)||(287382-287494)
chr8 (258-424)||(23136480-23136644)
chr8 (299-402)||(10895924-10896027)
chr8 (302-411)||(27521104-27521213)
chr8 (426-473)||(23689024-23689071)
chr8 (299-422)||(12167116-12167240)
chr8 (299-422)||(12411544-12411668)
chr8 (449-526)||(23160849-23160926)
chr8 (454-528)||(23136732-23136804)
chr8 (300-405)||(17894980-17895083)
chr8 (387-425)||(19742699-19742737)
chr8 (299-411)||(40267268-40267381)
chr8 (449-524)||(45531429-45531502)
chr8 (376-411)||(4930304-4930339)
chr8 (299-411)||(16291976-16292087)
chr8 (258-288)||(35136722-35136752)
chr8 (391-425)||(35136840-35136874)
chr8 (396-425)||(8351326-8351355)
chr8 (299-371)||(17890863-17890935)
chr8 (319-359)||(25064049-25064089)
chr8 (299-374)||(45531609-45531684)
[»] chr2 (11 HSPs)
chr2 (214-532)||(21119828-21120161)
chr2 (214-428)||(24972123-24972341)
chr2 (223-528)||(20103491-20103813)
chr2 (426-532)||(24971957-24972063)
chr2 (226-526)||(16139276-16139590)
chr2 (299-411)||(45049554-45049666)
chr2 (306-423)||(16311541-16311658)
chr2 (258-424)||(41747382-41747547)
chr2 (449-524)||(41747628-41747701)
chr2 (299-357)||(5243262-5243320)
chr2 (487-525)||(16311392-16311430)
[»] chr7 (3 HSPs)
chr7 (214-532)||(29493958-29494295)
chr7 (214-533)||(7946291-7946628)
chr7 (428-476)||(34899911-34899959)
[»] chr5 (5 HSPs)
chr5 (214-532)||(27588595-27588934)
chr5 (258-419)||(9662957-9663119)
chr5 (299-411)||(19205851-19205962)
chr5 (375-411)||(501250-501286)
chr5 (299-339)||(29857751-29857791)
[»] scaffold0155 (1 HSPs)
scaffold0155 (214-533)||(26640-26965)
[»] scaffold0216 (2 HSPs)
scaffold0216 (258-532)||(18060-18353)
scaffold0216 (426-532)||(25437-25543)
[»] chr1 (13 HSPs)
chr1 (214-428)||(22544093-22544305)
chr1 (214-428)||(15535164-15535376)
chr1 (223-428)||(45914950-45915155)
chr1 (426-533)||(45915177-45915284)
chr1 (474-531)||(48811289-48811346)
chr1 (304-411)||(8313970-8314077)
chr1 (304-411)||(46514433-46514540)
chr1 (426-473)||(22544029-22544076)
chr1 (365-422)||(19095482-19095539)
chr1 (299-411)||(11440879-11440991)
chr1 (299-374)||(3417367-3417442)
chr1 (426-473)||(15535100-15535147)
chr1 (214-288)||(43382252-43382327)
[»] scaffold0003 (2 HSPs)
scaffold0003 (216-425)||(52468-52677)
scaffold0003 (494-528)||(52397-52431)
[»] chr6 (12 HSPs)
chr6 (216-425)||(27434686-27434895)
chr6 (261-424)||(1607910-1608073)
chr6 (310-515)||(32681460-32681669)
chr6 (258-424)||(4856852-4857018)
chr6 (299-424)||(11550303-11550430)
chr6 (368-422)||(21992546-21992600)
chr6 (449-524)||(1607759-1607832)
chr6 (449-524)||(11550521-11550594)
chr6 (300-411)||(4749504-4749615)
chr6 (449-524)||(4856691-4856764)
chr6 (375-411)||(33452251-33452287)
chr6 (494-528)||(27434932-27434966)
[»] chr4 (14 HSPs)
chr4 (216-425)||(18066662-18066871)
chr4 (258-424)||(35647987-35648151)
chr4 (428-528)||(14253018-14253118)
chr4 (299-411)||(24026-24138)
chr4 (299-411)||(14288097-14288208)
chr4 (304-411)||(13914686-13914793)
chr4 (125-191)||(52763035-52763101)
chr4 (368-411)||(13923219-13923262)
chr4 (375-411)||(10780387-10780423)
chr4 (375-411)||(10973996-10974032)
chr4 (368-411)||(37069617-37069660)
chr4 (494-528)||(18066591-18066625)
chr4 (396-425)||(14253137-14253166)
chr4 (344-411)||(52538211-52538281)
[»] scaffold0059 (2 HSPs)
scaffold0059 (264-424)||(67123-67280)
scaffold0059 (264-424)||(75228-75385)
[»] scaffold0289 (1 HSPs)
scaffold0289 (305-411)||(22068-22173)
[»] scaffold0490 (1 HSPs)
scaffold0490 (317-422)||(9234-9339)
[»] scaffold0018 (1 HSPs)
scaffold0018 (299-411)||(67191-67303)
[»] scaffold0022 (1 HSPs)
scaffold0022 (299-411)||(101157-101270)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 90 - 532
Target Start/End: Complemental strand, 50246871 - 50246408
Alignment:
Q  90 taaatgcaattaggtgaagaaaatcccgccaagtacattagggttttggaaaaagtagaatgcattatgtaccttcgtattagataataagataagataa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||    
T  50246871 taaatgcaattaggtgaagaaaatcccgccaagtacattagggttttggaaaaagtagcatgcattatgtaccttcgtattagataata---taagataa 50246775  T
Q  190 gataagatttgccttaa--------taaaagaacatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatg 281  Q
    ||||||||||| |||||        ||| |||||| |||| ||||||||||||||||||||||||||||       ||| ||||||||||||||||||||    
T  50246774 gataagatttgtcttaaattttttttaagagaacacgtggcatcttcacattcttcatctcatttaatgctttcttatcgtccaatcaaattgaattatg 50246675  T
Q  282 actcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctata 381  Q
    |||||||||        ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  50246674 actcattcattttttttattagccaatcaagatgaaccatgactcatttagttttcatcaaccaatcaaaagtgatcatgccttgatttttt-tcctata 50246576  T
Q  382 tatagacaatttgtttttcattattttcatgtgtctcttcccccataa-----------------caagtattttatgtgttgtaaaagcatagaagttt 464  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  50246575 tatagacaatttgtttttcattattttcatgtgactcttcccccataattttttttttgtaataacaagtattttatgtgttgtaaaagcatagaagttt 50246476  T
Q  465 aatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatg 532  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50246475 aatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatg 50246408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 214 - 428
Target Start/End: Complemental strand, 2766168 - 2765956
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||  ||||||| ||||||||||||||||||||       |||||| ||||||||||||||| ||||||||||        ||||| ||||||| |    
T  2766168 acatgtgacatcttcatattcttcatctcatttaatgttttcttatcatctaatcaaattgaattacgactcattcattttttt-attagtcaatcaaga 2766070  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| ||| |||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2766069 tgaaccataactcatttagttttcatcaaccaatcaaaattgatcatgtcttgatttttt-tcctatatatagacaatttgtttttcattattttcatgt 2765971  T
Q  414 gtctcttcccccata 428  Q
    |||||||||||||||    
T  2765970 gtctcttcccccata 2765956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 426 - 531
Target Start/End: Complemental strand, 2765934 - 2765829
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 525  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2765934 ataacaaatattttatgagttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 2765835  T
Q  526 gttgat 531  Q
    ||||||    
T  2765834 gttgat 2765829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 50247622 - 50247535
Alignment:
Q  5 aagcagaaggaacggaaagagttggctcatggggtttcgaaataaataagttgtagtgcttgatttgaaattcaaatttcagctttaa 92  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50247622 aagcagaaggaatggaaagagttggctcatggggttttgaaataaataagttgtagtgctggatttgaaattcaaatttcagctttaa 50247535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 424
Target Start/End: Original strand, 20919286 - 20919447
Alignment:
Q  260 catccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgatta 359  Q
    ||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||| ||||||||||||| |  |||||||||| |||| |    
T  20919286 catccaatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgattcatgacacatttagttttcaccagccaatcaaaattgatca 20919383  T
Q  360 tgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    || | || ||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  20919384 tgtcatgtttttttc-cctatatattgacaatttgtttttctttattttcatatgtctcttcccc 20919447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 260 - 424
Target Start/End: Original strand, 20928248 - 20928409
Alignment:
Q  260 catccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgatta 359  Q
    ||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||| ||||||||||||| |  |||||||||| |||| |    
T  20928248 catccaatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgattcatgacacatttagttttcaccagccaatcaaaattgatca 20928345  T
Q  360 tgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    || | || ||||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  20928346 tgtcatgtttttttc-cctatatattgacaatttgtttttctttattttcatatgtctcttcccc 20928409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 428 - 528
Target Start/End: Complemental strand, 20783956 - 20783856
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||    
T  20783956 aacaagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgt 20783857  T
Q  528 t 528  Q
    |    
T  20783856 t 20783856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 258 - 403
Target Start/End: Original strand, 37197845 - 37197989
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgat 357  Q
    ||||||||||||||||||||||||||||||| |        |||| ||||||||||||| ||||||| |||||||||||||||  |||||||||| ||||    
T  37197845 atcatccaatcaaattgaattatgactcatttatttttt--attaaccaatcaaaatgattcatgacacatttagttttcatcagccaatcaaaattgat 37197942  T
Q  358 tatgccttgattttttct-cctatatatagacaatttgtttttcatt 403  Q
     ||| | ||||||||| | ||||||||| ||||||||| ||||||||    
T  37197943 catgtcatgattttttttccctatatattgacaatttgcttttcatt 37197989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 38353659 - 38353759
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| |||||  ||||||||||||||||||| ||||| ||||| || |||||    
T  38353659 aacaagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatctgtatgtaattttttattgt 38353758  T
Q  528 t 528  Q
    |    
T  38353759 t 38353759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 9270806 - 9270699
Alignment:
Q  303 gccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcat 402  Q
    |||||| ||||| |||||||||||||||| |||||||   ||||| |||| |||| ||| | ||||||||| |||||||||||||||| ||| |||||||    
T  9270806 gccaattaaaataaatcatgactcatttatttttcattagccaattaaaattgatcatgacatgatttttt-tcctatatatagacaacttgcttttcat 9270708  T
Q  403 tattttcat 411  Q
    |||||||||    
T  9270707 tattttcat 9270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 37198036 - 37198131
Alignment:
Q  431 aagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgtt 528  Q
    ||||||||| |||||| ||||||||| |||||||||||| ||||||||| |||||  |||| ||||| |||||  | ||||||| |||||||||||||    
T  37198036 aagtattttctgtgttttaaaagcatggaagtttaatcacttggttgtatattatgaggtttattttattttt--tgtgtatcttattgttaattgtt 37198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 20795343 - 20795286
Alignment:
Q  365 tgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 422  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||    
T  20795343 tgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 20795286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 30160553 - 30160658
Alignment:
Q  317 atcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtc 416  Q
    ||||||||||||||  |||||||   ||||||||||  ||| |||   ||||||||| | ||||||||||||||||| ||||||||||||||||| | ||    
T  30160553 atcatgactcatttgtttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttcatctatc 30160652  T
Q  417 tcttcc 422  Q
    ||||||    
T  30160653 tcttcc 30160658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 6440915 - 6440819
Alignment:
Q  303 gccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgttttt 399  Q
    ||||||||||||||||||||||||||||| |||||||    |||| |||| |||| ||| | |||||||||  ||||||||||||||| ||| ||||    
T  6440915 gccaatcaaaatgaatcatgactcatttatttttcattagtcaattaaaattgatcatgacatgatttttttccctatatatagacaacttgatttt 6440819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 37187498 - 37187608
Alignment:
Q  300 ttagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgttttt 399  Q
    ||||||||||||||   |||| |||||||||| |||| ||   |||||||||| |||| ||| | ||||||||| | ||||||||| |||||||| ||||    
T  37187498 ttagccaatcaaaagagatcacgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttttctatatataaacaatttg-tttt 37187596  T
Q  400 cattattttcat 411  Q
    |||||| |||||    
T  37187597 cattatcttcat 37187608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 5574053 - 5574159
Alignment:
Q  67 atttgaaattcaaatttcagctttaaatgcaattaggt-gaagaaaatcccgccaagta-cattagggttttggaaaaagtagaatgcattatgtacctt 164  Q
    ||||||||||||||||||||||||||||||||  |||| | | |||||||||||||  | ||||||||||| ||||||    | ||||||| ||||||||    
T  5574053 atttgaaattcaaatttcagctttaaatgcaaacaggtgggaaaaaatcccgccaaaaagcattagggtttaggaaaagaaggtatgcattgtgtacctt 5574152  T
Q  165 cgtatta 171  Q
     ||||||    
T  5574153 tgtatta 5574159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 6445227 - 6445124
Alignment:
Q  300 ttagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgttttt 399  Q
    ||||||||||||||   ||||||||||||||| |||| ||   |||||||||| |||| ||| | || ||||||   ||||||||| |||||||||||||    
T  6445227 ttagccaatcaaaagagatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgcttttttt--ctatatataaacaatttgttttt 6445130  T
Q  400 cattat 405  Q
    ||||||    
T  6445129 cattat 6445124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 411
Target Start/End: Complemental strand, 44907867 - 44907753
Alignment:
Q  300 ttagccaatcaaaatgaatca-tgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctc-ctatatataga--caatttgt 395  Q
    |||||||||||||||| |||| ||||||||||| |||||||     |||||||| |||||||| | ||||||||| |  |||||||||||  |||||||     
T  44907867 ttagccaatcaaaatggatcaatgactcattta-ttttcatgagttaatcaaaattgattatgacatgattttttttttctatatatagagacaatttgc 44907769  T
Q  396 ttttcattattttcat 411  Q
    ||||||||||||||||    
T  44907768 ttttcattattttcat 44907753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 20784005 - 20783976
Alignment:
Q  396 ttttcattattttcatgtgtctcttccccc 425  Q
    ||||||||||||||||||||||||||||||    
T  20784005 ttttcattattttcatgtgtctcttccccc 20783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 216 - 532
Target Start/End: Complemental strand, 45251142 - 45250812
Alignment:
Q  216 atgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatg 315  Q
    |||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||        ||||||| ||||| |||    
T  45251142 atgtggtatcttcacaatcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttttt-attagccgatcaagatg 45251044  T
Q  316 aatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgt 415  Q
    || |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45251043 aaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgatttttt-tcctatatatagacaatttgtttttcattattttcatgtgt 45250945  T
Q  416 ctcttccccc----------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttct 499  Q
    |||| ||||                 ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45250944 ctctcccccataattttttttttgtaataacaagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttct 45250845  T
Q  500 tttttatttgtatctaattgttaattgttgatg 532  Q
    |||||| ||||||||||||||||||||||||||    
T  45250844 tttttagttgtatctaattgttaattgttgatg 45250812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 214 - 532
Target Start/End: Original strand, 8362287 - 8362622
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||        ||||||||||||| |    
T  8362287 acatgtggcatcttcacattcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactctttcattttttt-attagccaatcaaga 8362385  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||  | ||||||||||||||||||||||||||||||| |||     
T  8362386 tgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgatttttttccttatatatagacaatttgtttttcattatttttatgg 8362485  T
Q  414 gtctcttccccc------------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgatt 495  Q
    ||||||||||||                  ||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  8362486 gtctcttccccccatattattttttttgtaataacaaatattttatgtgttttaaaagcatataagtttaatcatttgattgtaaattatagggttgatt 8362585  T
Q  496 ttcttttttatttgtatctaattgttaattgttgatg 532  Q
    |||||||||||||||||||||||||||||||||||||    
T  8362586 ttcttttttatttgtatctaattgttaattgttgatg 8362622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 208 - 428
Target Start/End: Original strand, 18666767 - 18666986
Alignment:
Q  208 aaaagaacatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaa 307  Q
    ||||| |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||        |||||||||    
T  18666767 aaaagtacatgtggcatcttcacattcttcatctcatttaatgcttttttatcatccaatcaaattgaattatgactcattcattttttt-attagccaa 18666865  T
Q  308 tcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattt 407  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||  ||| |||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  18666866 tcaagatgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatgccttgatttttttccctatatataggcaatttgtttttcattattt 18666965  T
Q  408 tcatgtgtctcttcccccata 428  Q
    |||||||||||||||||||||    
T  18666966 tcatgtgtctcttcccccata 18666986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 214 - 428
Target Start/End: Complemental strand, 23689299 - 23689087
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||  ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||        ||||| ||||||| |    
T  23689299 acatgtgacatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttttt-attagtcaatcaaga 23689201  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    ||||  ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  23689200 tgaactatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgatttttt-tcctatatataaacaatttgtttttcattattttcatgt 23689102  T
Q  414 gtctcttcccccata 428  Q
    |||||||||||||||    
T  23689101 gtctcttcccccata 23689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 426 - 533
Target Start/End: Original strand, 18667028 - 18667135
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 525  Q
    ||||||||||||| || |||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  18667028 ataacaagtatttgatttgttttaaaagcataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaatt 18667127  T
Q  526 gttgatgt 533  Q
    ||||||||    
T  18667128 gttgatgt 18667135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 8351377 - 8351477
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||    
T  8351377 aacaagtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgt 8351476  T
Q  528 t 528  Q
    |    
T  8351477 t 8351477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 432 - 528
Target Start/End: Complemental strand, 17890800 - 17890704
Alignment:
Q  432 agtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgtt 528  Q
    ||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  17890800 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgtt 17890704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 35136893 - 35136993
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||| |||||    
T  35136893 aacaagtattttatgtgttttaaaagcatataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgt 35136992  T
Q  528 t 528  Q
    |    
T  35136993 t 35136993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 432 - 526
Target Start/End: Original strand, 19742760 - 19742854
Alignment:
Q  432 agtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattg 526  Q
    ||||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  19742760 agtattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattg 19742854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 25064159 - 25064259
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||||||||||||||||| |||||||||| ||  ||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  25064159 aacaagtattttatgtgttttaaaagcatataaagttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgt 25064258  T
Q  528 t 528  Q
    |    
T  25064259 t 25064259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 23161118 - 23160990
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||| |||||||||||||||||||| ||||||||||||||   |||||||||| |||| ||||| | |||||||| |||| | ||| ||||||| ||||    
T  23161118 attagtcaatcaaaatgaatcatgacacatttagttttcataggccaatcaaaattgatcatgccataattttttc-cctagaaataaacaattt-tttt 23161021  T
Q  399 tcattattttcatgtgtctcttcccccataa 429  Q
    ||||||||||||| |||||||||||||||||    
T  23161020 tcattattttcatatgtctcttcccccataa 23160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 287382 - 287494
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||||||||||||||| ||||||||||||||| |||| ||   |||||||||| |||| ||| | | ||||||| |||||||||||||||| |||||||    
T  287382 attagccaatcaaaatggatcatgactcatttattttttattagccaatcaaaattgatcatgacataattttttttcctatatatagacaaattgtttt 287481  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  287482 tcattattttcat 287494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 23136480 - 23136644
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatt-tagttttcatccaccaatcaaaagtga 356  Q
    ||||||||||||||||||||||||||||||| |        |||||||||||||||||| ||||||| | || |||||||||||  ||| |||||| |||    
T  23136480 atcatccaatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgattcatgacactttatagttttcatcagccagtcaaaattga 23136577  T
Q  357 ttatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    | ||| | |||||||||| ||||||||| || ||||||||||||||| ||||| | ||||||||||||    
T  23136578 tcatgtcgtgattttttc-cctatatattgaaaatttgtttttcattgttttcttatgtctcttcccc 23136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 402
Target Start/End: Original strand, 10895924 - 10896027
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||| ||||||||||| ||||||||||||||| |||||||   |||||||||| |||| ||| | ||||||||| || ||||||||||||| |||||||    
T  10895924 attagtcaatcaaaatggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgattttttttcttatatatagacaaattgtttt 10896023  T
Q  399 tcat 402  Q
    ||||    
T  10896024 tcat 10896027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 411
Target Start/End: Complemental strand, 27521213 - 27521104
Alignment:
Q  302 agccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttca 401  Q
    |||||||||||||| ||||||||| ||||  |||||||   |||||||||| |||  ||| | ||||||||| ||||||| ||||| |||||||||||||    
T  27521213 agccaatcaaaatggatcatgactaatttctttttcatgagccaatcaaaattgaccatgtcatgattttttttcctatacatagataatttgtttttca 27521114  T
Q  402 ttattttcat 411  Q
    ||||||||||    
T  27521113 ttattttcat 27521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 23689071 - 23689024
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttg 473  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23689071 ataacaagtattttatgtgttttaaaagcatagaagtttaatcatttg 23689024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 12167240 - 12167116
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttg--tt 396  Q
    |||| |||||||||||| ||||||||||||||| |||||||   |||||||||| |||| ||  | ||||||||||  ||||||||| ||||||||  ||    
T  12167240 attatccaatcaaaatggatcatgactcatttatttttcatgagccaatcaaaattgatcataacatgattttttc-actatatataaacaatttggttt 12167142  T
Q  397 tttcattattttcatgtgtctcttcc 422  Q
    ||| ||||||||||| | ||||||||    
T  12167141 ttttattattttcatctatctcttcc 12167116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 12411668 - 12411544
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttg--tt 396  Q
    |||| |||||||||||| ||||||||||||||| |||||||   |||||||||| |||| ||  | ||||||||||  ||||||||| ||||||||  ||    
T  12411668 attatccaatcaaaatggatcatgactcatttatttttcatgagccaatcaaaattgatcataacatgattttttc-actatatataaacaatttggttt 12411570  T
Q  397 tttcattattttcatgtgtctcttcc 422  Q
    ||| ||||||||||| | ||||||||    
T  12411569 ttttattattttcatctatctcttcc 12411544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 526
Target Start/End: Complemental strand, 23160926 - 23160849
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattg 526  Q
    ||||||||  || |||||||| ||||||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||||    
T  23160926 aaaagcatgaaaatttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattg 23160849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 528
Target Start/End: Original strand, 23136732 - 23136804
Alignment:
Q  454 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgtt 528  Q
    |||||||||||||||| ||||||||| ||| | ||||||||||| |||||  | ||||||| |||||||||||||    
T  23136732 catagaagtttaatcacttggttgtagattttggggttgattttattttt--tgtgtatcttattgttaattgtt 23136804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 17895083 - 17894980
Alignment:
Q  300 ttagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgttttt 399  Q
    ||||||||||||||   ||||||||||||||| |||| ||   |||||||||| |||| ||| | || ||||||   ||||||||| |||||||||||||    
T  17895083 ttagccaatcaaaagagatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgcttttttt--ctatatataaacaatttgttttt 17894986  T
Q  400 cattat 405  Q
    ||||||    
T  17894985 cattat 17894980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 425
Target Start/End: Original strand, 19742699 - 19742737
Alignment:
Q  387 acaatttgtttttcattattttcatgtgtctcttccccc 425  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  19742699 acactttgtttttcattattttcatgtgtctcttccccc 19742737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 40267381 - 40267268
Alignment:
Q  299 attagccaatcaaaatgaatca-tgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcc-tatatatagacaatttgtt 396  Q
    ||||||||||||||||| |||| ||||||||| | |||||||    ||||||||| |||||||| | ||||||||| ||  |||| | |||||||||| |    
T  40267381 attagccaatcaaaatggatcaatgactcatt-atttttcatgagtcaatcaaaattgattatgacatgattttttttctatatacagagacaatttgct 40267283  T
Q  397 tttcattattttcat 411  Q
    |||||||||||||||    
T  40267282 tttcattattttcat 40267268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 524
Target Start/End: Complemental strand, 45531502 - 45531429
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaat 524  Q
    |||| |||||||||||||||| ||||||||| ||||| | ||||||||| |||||  | ||||||| |||||||||    
T  45531502 aaaaacatagaagtttaatcacttggttgtagattatggagttgattttattttt--tgtgtatcttattgttaat 45531429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 4930304 - 4930339
Alignment:
Q  376 cctatatatagacaatttgtttttcattattttcat 411  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4930304 cctatatatagacaatttgtttttcatcattttcat 4930339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 16291976 - 16292087
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttg-ttt 397  Q
    |||| |||||||||||| ||||||||||||||| |||||||    ||||||||| |||| ||  | ||||||||    ||||||||| |||||||| |||    
T  16291976 attatccaatcaaaatggatcatgactcatttatttttcatgagtcaatcaaaattgatcataacatgattttt--cactatatataaacaatttgattt 16292073  T
Q  398 ttcattattttcat 411  Q
    || |||||||||||    
T  16292074 tttattattttcat 16292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 35136722 - 35136752
Alignment:
Q  258 atcatccaatcaaattgaattatgactcatt 288  Q
    |||||||||||||||||||||||||||||||    
T  35136722 atcatccaatcaaattgaattatgactcatt 35136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 35136840 - 35136874
Alignment:
Q  391 tttgtttttcattattttcatgtgtctcttccccc 425  Q
    |||||||||||||||||||| ||||||||||||||    
T  35136840 tttgtttttcattattttcacgtgtctcttccccc 35136874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 8351326 - 8351355
Alignment:
Q  396 ttttcattattttcatgtgtctcttccccc 425  Q
    ||||||||||||||||||||||||||||||    
T  8351326 ttttcattattttcatgtgtctcttccccc 8351355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 17890935 - 17890863
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgatttt 371  Q
    ||||||||||||| | | | |||||||||||||||||||| |  |||||||||| |||||| ||  |||||||    
T  17890935 attagccaatcaagacggaccatgactcatttagttttcaccagccaatcaaaattgattacgcaatgatttt 17890863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 25064049 - 25064089
Alignment:
Q  319 catgactcatttagttttcatccaccaatcaaaagtgatta 359  Q
    |||||||||||||||||||| | ||||||||||| ||||||    
T  25064049 catgactcatttagttttcaccaaccaatcaaaattgatta 25064089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 45531684 - 45531609
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatcca-ccaatcaaaagtgattatgccttgattttttc 374  Q
    ||||| |||||||||||| ||||| | |||||||||||| |||| |||||||||| |||||| | | ||||||||||    
T  45531684 attagtcaatcaaaatgattcatggcacatttagttttc-tccagccaatcaaaattgattacgtcatgattttttc 45531609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 214 - 532
Target Start/End: Original strand, 21119828 - 21120161
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    ||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||        ||||||||||||| |    
T  21119828 acatgtggtatcttcgcattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttatt-attagccaatcaaga 21119926  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| |||||||||||||||||| ||| |||||| |||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21119927 tgaaccatgactcatttagtttttatcaaccaattaaaattgatcatgctttgattttttttcctatatatagacaatttgtttttcattattttcatgt 21120026  T
Q  414 gtctcttccccc-----------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattt 496  Q
    ||||||||||||                 ||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| || |||||||||    
T  21120027 gtctcttcccccataattttttttttgtaataacaagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattgta-ggttgattt 21120125  T
Q  497 tcttttttatttgtatctaattgttaattgttgatg 532  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21120126 tcttttttagttgtatctaattgttaattgttgatg 21120161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 214 - 428
Target Start/End: Complemental strand, 24972341 - 24972123
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||        ||||| ||||||| |    
T  24972341 acatgtggcatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcgttcattttttt-attagtcaatcaaga 24972243  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttct-----cctatatatagacaatttgtttttcattatttt 408  Q
    |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |     || ||||||||||||||||||||||||||||||    
T  24972242 tgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgattttttttttcttccaatatatagacaatttgtttttcattatttt 24972143  T
Q  409 catgtgtctcttcccccata 428  Q
    ||||||||||||||||||||    
T  24972142 catgtgtctcttcccccata 24972123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 223 - 528
Target Start/End: Original strand, 20103491 - 20103813
Alignment:
Q  223 atcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatg 322  Q
    |||||||| |||| ||||||||||||||       ||||||||||||||||||||||||||||||| |        ||||||||||||| ||| | ||||    
T  20103491 atcttcacgttctacatctcatttaatgttttcttatcatccaatcaaattgaattatgactcatttattttttt-attagccaatcaagatggaccatg 20103589  T
Q  323 actcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctc-ctatatatagacaatttgtttttcattattttcatgtgtctcttc 421  Q
    |||||||||||||||| | | ||||||||| ||||||  |  |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  20103590 actcatttagttttcaccaatcaatcaaaattgattacacaatgattttt-ctctctatatatagacactttgtttttcattattttcatgtgtctcttc 20103688  T
Q  422 cccc------------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttt 503  Q
    ||||                  | |||||||| |||||||||| |||||||||| ||| ||||||| ||||||||| |||||  ||||||||||||||||    
T  20103689 cccccataaacttttttccgtaaaaacaagtactttatgtgttttaaaagcatataagattaatcacttggttgtagattatgtggttgattttcttttt 20103788  T
Q  504 tatttgtatctaattgttaattgtt 528  Q
    |||||||||||||||||| ||||||    
T  20103789 tatttgtatctaattgtttattgtt 20103813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 426 - 532
Target Start/End: Complemental strand, 24972063 - 24971957
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 525  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||     
T  24972063 ataacaagtattttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatc 24971964  T
Q  526 gttgatg 532  Q
    |||||||    
T  24971963 gttgatg 24971957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 226 - 526
Target Start/End: Original strand, 16139276 - 16139590
Alignment:
Q  226 ttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgact 325  Q
    |||||||||| ||||| ||||||||       |||||||||||||||||||||||| || ||| |        |||||| |||||| ||| | ||| |||    
T  16139276 ttcacattctacatctaatttaatgctttcttatcatccaatcaaattgaattatgtctaatttattttttt-attagcgaatcaagatggaccatcact 16139374  T
Q  326 catttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttccccc 425  Q
    ||||| ||||||| | ||||||||||| |||| ||||| |||||||| ||| | | |||||||| ||||||||||||||||| |||| ||||||||||||    
T  16139375 cattttgttttcaccaaccaatcaaaattgatcatgccatgattttt-ctc-tgtgtatagacactttgtttttcattatttccatgcgtctcttccccc 16139472  T
Q  426 -----------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttattt 508  Q
                     | ||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||| | ||||||||||||||||||||    
T  16139473 cataattttttttcgttaaaacaagtattttatgtgttttaaaagcatataagtttaatcacttggttgtagattatggagttgattttcttttttattt 16139572  T
Q  509 gtatctaattgttaattg 526  Q
    ||||||||||||| ||||    
T  16139573 gtatctaattgtttattg 16139590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 45049554 - 45049666
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||||||||||||||| ||||||||||||||| |||||||   |||||||||| |||| ||| | ||||||||| |||||||||||||||| |||||||    
T  45049554 attagccaatcaaaatggatcatgactcatttatttttcattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttt 45049653  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  45049654 tcattattttcat 45049666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 16311658 - 16311541
Alignment:
Q  306 aatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattat 405  Q
    |||||||||| ||||||||||||||| |||| |||  |||||||||| | || ||||| |||||||||  |||||||||||||| ||   ||||||||||    
T  16311658 aatcaaaatggatcatgactcatttaatttttatcagccaatcaaaatttatcatgccatgatttttttccctatatatagacatttaacttttcattat 16311559  T
Q  406 tttcatgtgtctcttccc 423  Q
    |||||||||||| |||||    
T  16311558 tttcatgtgtcttttccc 16311541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 41747382 - 41747547
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatt-tagtttt-catccaccaatcaaaagtg 355  Q
    ||||||||||||||||||||||||||| ||| |        ||||| |||||||||||| ||||||  | || ||||||| ||||   ||||||||| ||    
T  41747382 atcatccaatcaaattgaattatgacttatttatttttt--attagtcaatcaaaatgattcatgatactttatagtttttcatcggtcaatcaaaattg 41747479  T
Q  356 attatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    || ||| | ||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  41747480 atcatgtcatgatttttt-tcctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 41747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 524
Target Start/End: Original strand, 41747628 - 41747701
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaat 524  Q
    |||| |||||||||||||||| ||||||||| ||| | ||||||||||| |||||  | ||||||| |||||||||    
T  41747628 aaaaacatagaagtttaatcacttggttgtagattttggggttgattttattttt--tgtgtatcttattgttaat 41747701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 5243320 - 5243262
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgat 357  Q
    |||| |||||||||||| ||||||||||||||| |||||||   |||||||||| ||||    
T  5243320 attatccaatcaaaatggatcatgactcatttatttttcatgagccaatcaaaattgat 5243262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 525
Target Start/End: Complemental strand, 16311430 - 16311392
Alignment:
Q  487 gggttgattttcttttttatttgtatctaattgttaatt 525  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  16311430 gggttgattttcttttgtatgtgtatctaattgttaatt 16311392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 214 - 532
Target Start/End: Original strand, 29493958 - 29494295
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||        ||||||||||||| |    
T  29493958 acatgtggtatcttcacattcttcatcttatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttttt-attagccaatcaaga 29494056  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |    
T  29494057 tgaatcatgactcatttagttttcatcaaccaatcaaaattgatcatgcctt-attttttc-cctatatatagacaatttgtttttcattattttcattt 29494154  T
Q  414 gtctcttccccc----------------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggtt 491  Q
    ||||||||||||                      ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||    
T  29494155 gtctcttcccccataatttttgttttgttttgtaataacaattattttatgtgttttaaaagcatataagtttaatcatttggttgtagattataggatt 29494254  T
Q  492 gattttcttttttatttgtatctaattgttaattgttgatg 532  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29494255 gattttcttttttatttgtatctaattgttaattgttgatg 29494295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 214 - 533
Target Start/End: Complemental strand, 7946628 - 7946291
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||  ||||||| ||||||||||||||||||||       |||||||||||||||| ||||||||||||||||        ||||||||||||| |    
T  7946628 acatgtgacatcttcatattcttcatctcatttaatgttttcttatcatccaatcaaattaaattatgactcattcattttttt-attagccaatcaaga 7946530  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| |||||||||||||||||||||| |||||||||||  ||| |||  ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  7946529 tgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatgttttgatttttttccctatatatagacaatttgtttttcattattttcatgt 7946430  T
Q  414 gtctcttccccc-----------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaat---tatagggttga 493  Q
    ||||||| ||||                 |||||||||||||||||| || |||||||||| || |||||||| ||||||||| ||   |||||||||||    
T  7946429 gtctctttccccatatttttttttttgtaataacaagtattttatgttttttaaaagcataaaaatttaatca-ttggttgtagattaatatagggttga 7946331  T
Q  494 ttttcttttttatttgtatctaattgttaattgttgatgt 533  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7946330 ttttcttttttatttgtatctaattgttaattgttgatgt 7946291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 34899959 - 34899911
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggtt 476  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34899959 aacaagtattttatgtgttttaaaagcatagaagtttaatcatttggtt 34899911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 214 - 532
Target Start/End: Original strand, 27588595 - 27588934
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |        ||||||||||||| |    
T  27588595 acatgtggcatcttcacattcttcatctcatttaatattttcttatcatccaatcaaattgaattatgactcatttattttttt-attagccaatcaaga 27588693  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  27588694 tgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgattttttttccaatatatagacaatttgtttttcattattttcatgt 27588793  T
Q  414 gtctcttccccc----------------------ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggtt 491  Q
    ||||||||||||                      ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||    
T  27588794 gtctcttcccccatatatatatattttttttgtaataacaagtattttatgtgttttcaaagcatagaagtttaatcatttgattgtagattatagggtt 27588893  T
Q  492 gattttcttttttatttgtatctaattgttaattgttgatg 532  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  27588894 gattttcttttttagttgtatctaattgttaatcgttgatg 27588934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 419
Target Start/End: Complemental strand, 9663119 - 9662957
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcattt--agttttcatccaccaatcaaaagtg 355  Q
    ||||||||||||||||||||||||||||||| |        |||||||||||||||||| |||| || |||||  ||||||||||  |||||||||| ||    
T  9663119 atcatccaatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgattcataacacatttctagttttcatcagccaatcaaaattg 9663022  T
Q  356 attatgccttgatttttt-ctcctatatatagacaatttgtttttcattattttcatgtgtctct 419  Q
     | ||| | ||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||    
T  9663021 ttcatgtcatgatttttttcccctatatattgacaatttgtttttcattgttttcatatgtctct 9662957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 19205962 - 19205851
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||||||||| ||||| |||||||||||| || |||||||   |||||||||| |||| ||  | ||||||||| ||||||||||||| ||||||||||    
T  19205962 attagccaatctaaatggatcatgactcatctatttttcatgagccaatcaaaattgatcatatcatgatttttt-tcctatatatagataatttgtttt 19205864  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  19205863 tcattattttcat 19205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 501250 - 501286
Alignment:
Q  375 tcctatatatagacaatttgtttttcattattttcat 411  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  501250 tcctatataaagacaatttgtttttcatcattttcat 501286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 29857751 - 29857791
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcat 339  Q
    |||| |||||||||||| ||||||||||||||| |||||||    
T  29857751 attatccaatcaaaatggatcatgactcatttatttttcat 29857791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 214 - 533
Target Start/End: Original strand, 26640 - 26965
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||        |||| |||||||| |    
T  26640 acatgtggcatcttcacattcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgactcattcatattttt-attaaccaatcaaga 26738  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctccta-tatatagacaatttgtttttcattattttcatg 412  Q
    |||| |||||||||||||||||||||| |||||||||||  ||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  26739 tgaaccatgactcatttagttttcatcaaccaatcaaaatggatcatgccttgattttttc-cctattatatagacaatttgtttttcattattttcatg 26837  T
Q  413 tgtctcttcccccataacaagtatttt---------atgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttt 503  Q
    |||||||||| ||||||    | ||||         | || || |  |||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  26838 tgtctcttccgccataattttttttttggtaataacaagtatttt--aagcatagaaatttaatcatttggttgtagattatagggttgattttcttttt 26935  T
Q  504 tatttgtatctaattgttaattgttgatgt 533  Q
    ||||||||||||||||||||||||||||||    
T  26936 tatttgtatctaattgttaattgttgatgt 26965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 258 - 532
Target Start/End: Original strand, 18060 - 18353
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgat 357  Q
    ||||||||||||||||||| |||||||||||||        ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||    
T  18060 atcatccaatcaaattgaactatgactcattcatttttat-attagccaatcaagatgaaccatgactcatttagttttcatcaaccaatcaaaattgat 18158  T
Q  358 tatgccttga-ttttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc-------------------cataacaagtatt 437  Q
     ||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||                    ||||||||||||    
T  18159 catgccttgatttttttttcctatatagagacaatttgtttatcattattttcatgtgtctcttccccaataattttttttttttgtaataacaagtatt 18258  T
Q  438 ttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatg 532  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  18259 ttatgtgttttcaaagcatagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatg 18353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 426 - 532
Target Start/End: Original strand, 25437 - 25543
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 525  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25437 ataacatgtattttacgtgttttaaaagcatagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaatt 25536  T
Q  526 gttgatg 532  Q
    |||||||    
T  25537 gttgatg 25543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 214 - 428
Target Start/End: Complemental strand, 22544305 - 22544093
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||  ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||        ||||||||||||| |    
T  22544305 acatgtgacatcttcacattcttcatctcatttaatgctttcttatcatccaatcaaattgaattatgactcattcattttttt-attagccaatcaaga 22544207  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    |||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  22544206 tgaaccatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgatttttt-tcctatatataaacaatttgtttttcattattttcatgt 22544108  T
Q  414 gtctcttcccccata 428  Q
    |||||||||||||||    
T  22544107 gtctcttcccccata 22544093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 214 - 428
Target Start/End: Complemental strand, 15535376 - 15535164
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||||| ||||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||        ||||| ||||||| |    
T  15535376 acatgtggcatcttcacattcttcatttcatttaatgttttcttatcatccaatcaaattgaattatgactcattcattttttt-attagtcaatcaaga 15535278  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgt 413  Q
    ||||  ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  15535277 tgaactatgactcatttagttttcatcaaccaatcaaaattgatcatgccttgatttttt-tcctatatataaacaatttgtttttcattattttcatgt 15535179  T
Q  414 gtctcttcccccata 428  Q
    |||||||||||||||    
T  15535178 gtctcttcccccata 15535164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 223 - 428
Target Start/End: Original strand, 45914950 - 45915155
Alignment:
Q  223 atcttcacattcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatg 322  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||        |||||||||| || ||||| ||||    
T  45914950 atcttcacattcttcatctcatttaatgttttcttatcatccaatcaaattgaattatgacttattcattttttt-attagccaattaagatgaaccatg 45915048  T
Q  323 actcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcc-tatatatagacaatttgtttttcattattttcatgtgtctcttc 421  Q
    |||||||||||||||||| |||||||||||  ||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  45915049 actcatttagttttcatcaaccaatcaaaatggatcatgccttgattttttttccctgtatatagacaatttgtttttcattattttcatgtgtctcttc 45915148  T
Q  422 ccccata 428  Q
    |||||||    
T  45915149 ccccata 45915155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 426 - 533
Target Start/End: Original strand, 45915177 - 45915284
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaatt 525  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  45915177 ataacaagtattttatgtgttttaaaagcataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaatt 45915276  T
Q  526 gttgatgt 533  Q
    ||||||||    
T  45915277 gttgatgt 45915284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 48811346 - 48811289
Alignment:
Q  474 gttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgat 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48811346 gttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgat 48811289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 8314077 - 8313970
Alignment:
Q  304 ccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcatt 403  Q
    |||||||||||  ||||||||||||||| |||| ||   |||||||||| |||| ||| | ||||||||| |||||||||||||||| || |||||||||    
T  8314077 ccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattatttttcatt 8313978  T
Q  404 attttcat 411  Q
    ||||||||    
T  8313977 attttcat 8313970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 46514433 - 46514540
Alignment:
Q  304 ccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcatt 403  Q
    ||||||||||||||| |||| ||||||| |||||||   ||||| |||| |||| ||| | |||||||||| ||||||||||||||| ||| ||||||||    
T  46514433 ccaatcaaaatgaatgatgattcatttatttttcattagccaattaaaattgatcatgacatgattttttcccctatatatagacaacttgcttttcatt 46514532  T
Q  404 attttcat 411  Q
    ||||||||    
T  46514533 attttcat 46514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 22544076 - 22544029
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttg 473  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22544076 ataacaagtattttatgtgttttaaaagcatagaagtttaatcatttg 22544029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 19095482 - 19095539
Alignment:
Q  365 tgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 422  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||    
T  19095482 tgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 19095539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 11440879 - 11440991
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagtttt--catccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtt 396  Q
    ||||| ||||||||||| ||||||||||||||| ||||  |||  || |||||||| |||| ||| |  |||||| ||  ||||||||| ||| ||||||    
T  11440879 attagtcaatcaaaatggatcatgactcatttatttttttcattaactaatcaaaattgatcatgacacgattttatc--ctatatataaacagtttgtt 11440976  T
Q  397 tttcattattttcat 411  Q
    |||||||||||||||    
T  11440977 tttcattattttcat 11440991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 3417367 - 3417442
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttc 374  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||  |||||||||| |||| ||| | | ||||||||    
T  3417367 attagtcaatcaaaatggatcatgactcatttatttttcatcagccaatcaaaattgatcatggcataattttttc 3417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 15535147 - 15535100
Alignment:
Q  426 ataacaagtattttatgtgttgtaaaagcatagaagtttaatcatttg 473  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  15535147 ataacaactattttatgtgttttaaaagcatagaagtttgatcatttg 15535100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 43382252 - 43382327
Alignment:
Q  214 acatgtggtatcttcacattcttcatctcatttaatg-nnnnnnnatcatccaatcaaattgaattatgactcatt 288  Q
    |||||||  ||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||||||    
T  43382252 acatgtgacatcttcacattcttcatctcatttaatgttttttttgtcatccaatcaaattgaatcatgactcatt 43382327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 425
Target Start/End: Complemental strand, 52677 - 52468
Alignment:
Q  216 atgtggtatcttcacat--tcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||| ||||||||||  ||| ||||||||||||||       |||||||||| |||||||||||||||||||| |        ||||||||||||| |    
T  52677 atgtggcatcttcacatgatctacatctcatttaatgttttcttatcatccaattaaattgaattatgactcatttatttttt--attagccaatcaaga 52580  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttt-tctcctatatatagacaatttgtttttcattattttcatg 412  Q
    || | |||||||||||||||||||| | ||||||||||| ||||||  |  |||||||| |||| | |||||||||||||||||||||||||||||||||    
T  52579 tggaccatgactcatttagttttcaccaaccaatcaaaattgattacacaatgatttttgtctc-tgtatatagacaatttgtttttcattattttcatg 52481  T
Q  413 tgtctcttccccc 425  Q
    |||||||||||||    
T  52480 tgtctcttccccc 52468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 528
Target Start/End: Complemental strand, 52431 - 52397
Alignment:
Q  494 ttttcttttttatttgtatctaattgttaattgtt 528  Q
    |||||||||||||||||||||||||||| ||||||    
T  52431 ttttcttttttatttgtatctaattgtttattgtt 52397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 425
Target Start/End: Original strand, 27434686 - 27434895
Alignment:
Q  216 atgtggtatcttcacat--tcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||| ||||||||||  ||| ||||||||||||||       |||||||||| |||||||||||||||||||| |        ||||||||||||| |    
T  27434686 atgtggcatcttcacatgatctacatctcatttaatgttttcttatcatccaattaaattgaattatgactcatttatttttt--attagccaatcaaga 27434783  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttt-tctcctatatatagacaatttgtttttcattattttcatg 412  Q
    || | |||||||||||||||||||| | ||||||||||| ||||||  |  |||||||| |||| | |||||||||||||||||||||||||||||||||    
T  27434784 tggaccatgactcatttagttttcaccaaccaatcaaaattgattacacaatgatttttgtctc-tgtatatagacaatttgtttttcattattttcatg 27434882  T
Q  413 tgtctcttccccc 425  Q
    |||||||||||||    
T  27434883 tgtctcttccccc 27434895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 261 - 424
Target Start/End: Complemental strand, 1608073 - 1607910
Alignment:
Q  261 atccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcattta--gttttcatccaccaatcaaaagtgatt 358  Q
    |||||||||||||||||||| ||||||| |        |||||||||||||||||| ||||||| ||||||  |||||||||  |||||||||| ||||     
T  1608073 atccaatcaaattgaattataactcatttatttttt--attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatc 1607976  T
Q  359 atgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    ||| | |||||||||  ||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  1607975 atgtcatgatttttttccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 1607910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 515
Target Start/End: Original strand, 32681460 - 32681669
Alignment:
Q  310 aaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttc 409  Q
    ||||||||||||||||||||||||||||| |    |||||||| |||||||||| ||||| ||| | ||||||||||||||||| |||||||||||||||    
T  32681460 aaaatgaatcatgactcatttagttttcaccattaaatcaaaattgattatgccatgattattttttctatatatagacaatttatttttcattattttc 32681559  T
Q  410 atgtgtctcttcc-cccat-aacaagtatttt-atgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttc-tttttta 505  Q
    |||||| |||||| ||||| || |||| ||||  |||||| | |||||||  || | |||||| ||  || || ||||| || ||||||||| |||||||    
T  32681560 atgtgtttcttcctcccataaaaaagttttttcttgtgttttgaaagcatgaaattgtaatcactttcttctagattatgggattgattttcttttttta 32681659  T
Q  506 tttgtatcta 515  Q
    ||||||||||    
T  32681660 tttgtatcta 32681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 424
Target Start/End: Complemental strand, 4857018 - 4856852
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcattta--gttttcatccaccaatcaaaagtg 355  Q
    ||||||||||||||||||||||||||||||| |        |||| ||||||||||||| ||||||| ||||||  |||||||||  |||||||||| ||    
T  4857018 atcatccaatcaaattgaattatgactcatttatttttt--attaaccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattg 4856921  T
Q  356 attatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
    || ||| || ||||||||   |||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  4856920 atcatgtctagatttttttcactatatattgacaatttgtttttcattgttttcatatgtctcttcccc 4856852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 11550303 - 11550430
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcattta--gttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtt 396  Q
    |||| ||||||||||||| ||||||| ||||||  |||||||||  |||||||||| |||| ||| |||||||||||  ||||||||| |||||||||||    
T  11550303 attaaccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtcttgatttttttccctatatattgacaatttgtt 11550402  T
Q  397 tttcattattttcatgtgtctcttcccc 424  Q
    ||||||| ||||||| | ||||||||||    
T  11550403 tttcattgttttcatatatctcttcccc 11550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 21992600 - 21992546
Alignment:
Q  368 ttttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcc 422  Q
    |||||| | ||||||||||||||||||||||||||||||||||| | ||||||||    
T  21992600 tttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 21992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 524
Target Start/End: Complemental strand, 1607832 - 1607759
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaat 524  Q
    |||| |||||||||||||||| ||||||||| ||||| ||||||||||| |||||  | ||||||| |||||||||    
T  1607832 aaaaacatagaagtttaatcacttggttgtagattatggggttgattttattttt--tgtgtatcttattgttaat 1607759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 524
Target Start/End: Original strand, 11550521 - 11550594
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaat 524  Q
    |||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||  | ||||||| |||||||||    
T  11550521 aaaaacatagaagtttaatcatttggttgtagattttggggttgattttattttt--tgtgtatcttattgttaat 11550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 411
Target Start/End: Original strand, 4749504 - 4749615
Alignment:
Q  300 ttagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgttttt 399  Q
    |||| |||||||||   ||||||||||||||| |||| ||   |||||||||| |||| ||| | |||||||||    |||||||| |||||||||||||    
T  4749504 ttagtcaatcaaaagagatcatgactcatttattttttatgagccaatcaaaattgatcatgacatgatttttttctatatatataaacaatttgttttt 4749603  T
Q  400 cattattttcat 411  Q
    |||||| |||||    
T  4749604 cattatcttcat 4749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 524
Target Start/End: Complemental strand, 4856764 - 4856691
Alignment:
Q  449 aaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaat 524  Q
    |||| |||| ||||||||||||||||||||| ||| | ||||||||||| |||||  | ||||||| |||||||||    
T  4856764 aaaaacataaaagtttaatcatttggttgtagattttggggttgattttattttt--tgtgtatcttattgttaat 4856691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 33452287 - 33452251
Alignment:
Q  375 tcctatatatagacaatttgtttttcattattttcat 411  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33452287 tcctatatatagacaatttgtttttcatcattttcat 33452251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 528
Target Start/End: Original strand, 27434932 - 27434966
Alignment:
Q  494 ttttcttttttatttgtatctaattgttaattgtt 528  Q
    |||||||||||||||||||||||||||| ||||||    
T  27434932 ttttcttttttatttgtatctaattgtttattgtt 27434966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 425
Target Start/End: Complemental strand, 18066871 - 18066662
Alignment:
Q  216 atgtggtatcttcacat--tcttcatctcatttaatgnnnnnnnatcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaa 313  Q
    |||||| ||||||||||  ||| ||||||||||||||       |||||||||| |||||||||||||||||||| |        ||||||||||||| |    
T  18066871 atgtggcatcttcacatgatctacatctcatttaatgttttcttatcatccaattaaattgaattatgactcatttatttttt--attagccaatcaaga 18066774  T
Q  314 tgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttt-tctcctatatatagacaatttgtttttcattattttcatg 412  Q
    || | |||||||||||||||||||| | ||||||||||| ||||||  |  |||||||| |||| | |||||||||||||||||||||||||||||||||    
T  18066773 tggaccatgactcatttagttttcaccaaccaatcaaaattgattacacaatgatttttgtctc-tgtatatagacaatttgtttttcattattttcatg 18066675  T
Q  413 tgtctcttccccc 425  Q
    |||||||||||||    
T  18066674 tgtctcttccccc 18066662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 35647987 - 35648151
Alignment:
Q  258 atcatccaatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgat 357  Q
    ||||||||||||||||||||||||||| ||| |        |||||||||||||||||| |||| || |||||||||||||    |||||||||| || |    
T  35647987 atcatccaatcaaattgaattatgacttatttatttttt--attagccaatcaaaatgattcataacacatttagttttcactagccaatcaaaattgtt 35648084  T
Q  358 tatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
     ||| | ||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  35648085 catgtcatgattttttttcctatatattgacaatttgtttttcattattttcatatgtctcttcccc 35648151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 428 - 528
Target Start/End: Complemental strand, 14253118 - 14253018
Alignment:
Q  428 aacaagtattttatgtgttgtaaaagcatagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgt 527  Q
    ||||| ||||||||||||| |||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  14253118 aacaaatattttatgtgttttaaaagcatataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgt 14253019  T
Q  528 t 528  Q
    |    
T  14253018 t 14253018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 24138 - 24026
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||||||||||||||| || |||||||||||| |||||||   |||||||||| |||| ||| | ||||||||| |||||||||||||||| |||||||    
T  24138 attagccaatcaaaatggataatgactcatttatttttcattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaaattgtttt 24039  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  24038 tcattattttcat 24026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 14288208 - 14288097
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||||| |||| ||| | ||| |||||| |||||||||| |||| ||| |||    
T  14288208 attagccaatcaaaatgaatcatgactcatttatttttcattagccaatcaaaattgatcatgacatga-tttttcccctatatatacacaacttggttt 14288110  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  14288109 tcattattttcat 14288097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 13914793 - 13914686
Alignment:
Q  304 ccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcatt 403  Q
    |||||||||||  ||||||||||||||| |||| ||   |||||||||| |||| ||  | ||||||||| |||||||||||||||| ||||||||||||    
T  13914793 ccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgtttttcatt 13914694  T
Q  404 attttcat 411  Q
    ||||||||    
T  13914693 attttcat 13914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 52763101 - 52763035
Alignment:
Q  125 cattagggttttggaaaaagtagaatgcattatgtaccttcgtattagataataagataagataaga 191  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  52763101 cattagggttttgaaaaaagtaacatgcattatgaaccttcgtattagataataagataagataaga 52763035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 13923262 - 13923219
Alignment:
Q  368 ttttttctcctatatatagacaatttgtttttcattattttcat 411  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  13923262 ttttttttcctatatatagacaatttgtttttcatcattttcat 13923219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 10780387 - 10780423
Alignment:
Q  375 tcctatatatagacaatttgtttttcattattttcat 411  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10780387 tcctatatataggcaatttgtttttcattattttcat 10780423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 10973996 - 10974032
Alignment:
Q  375 tcctatatatagacaatttgtttttcattattttcat 411  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10973996 tcctatatataggcaatttgtttttcattattttcat 10974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 37069660 - 37069617
Alignment:
Q  368 ttttttctcctatatatagacaatttgtttttcattattttcat 411  Q
    |||||| | |||||||||||||||||||||||||| ||||||||    
T  37069660 tttttttttctatatatagacaatttgtttttcatcattttcat 37069617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 528
Target Start/End: Complemental strand, 18066625 - 18066591
Alignment:
Q  494 ttttcttttttatttgtatctaattgttaattgtt 528  Q
    |||||||||||||||||||||||||||| ||||||    
T  18066625 ttttcttttttatttgtatctaattgtttattgtt 18066591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 14253166 - 14253137
Alignment:
Q  396 ttttcattattttcatgtgtctcttccccc 425  Q
    ||||||||||||||||||||||||||||||    
T  14253166 ttttcattattttcatgtgtctcttccccc 14253137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 52538211 - 52538281
Alignment:
Q  344 caatcaaaagtgattatgccttgattttt---tctcctatatatagacaatttgtttttcattattttcat 411  Q
    ||||||||| |||||||| | ||||||||   |||  |||||| |||||||||| ||||||||||||||||    
T  52538211 caatcaaaattgattatgacatgatttttctttcttatatatagagacaatttgcttttcattattttcat 52538281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 67280 - 67123
Alignment:
Q  264 caatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgcc 363  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||| | ||||| ||||||||||||| |  |||||||||| |||| ||| |    
T  67280 caatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgatttatgacacatttagttttcaccagccaatcaaaattgatcatgtc 67183  T
Q  364 ttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
     || ||||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  67182 atgtttttttc-cctatatatttacaatttgtttttcattattttcatatgtctcttcccc 67123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 75385 - 75228
Alignment:
Q  264 caatcaaattgaattatgactcattcannnnnnnnattagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgcc 363  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||| | ||||| ||||||||||||| |  |||||||||| |||| ||| |    
T  75385 caatcaaattgaattatgactcatttatttttt--attagccaatcaaaatgatttatgacacatttagttttcaccagccaatcaaaattgatcatgtc 75288  T
Q  364 ttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 424  Q
     || ||||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  75287 atgtttttttc-cctatatatttacaatttgtttttcattattttcatatgtctcttcccc 75228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 305 - 411
Target Start/End: Complemental strand, 22173 - 22068
Alignment:
Q  305 caatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcatta 404  Q
    |||||||||| |||||||||||||||| |||||||   ||||| |||| |||| ||| | |||||||||| ||||||||||||||| ||| |||||||||    
T  22173 caatcaaaataaatcatgactcatttatttttcattagccaattaaaattgatcatgacatgattttttc-cctatatatagacaacttgcttttcatta 22075  T
Q  405 ttttcat 411  Q
    |||||||    
T  22074 ttttcat 22068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 422
Target Start/End: Original strand, 9234 - 9339
Alignment:
Q  317 atcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttttcattattttcatgtgtc 416  Q
    ||||||||||||||| |||||||   ||||||||||  ||| |||   ||||||||| | ||||||||||||||||||||||||||||||||||| | ||    
T  9234 atcatgactcatttatttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatc 9333  T
Q  417 tcttcc 422  Q
    ||||||    
T  9334 tcttcc 9339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 67303 - 67191
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttgattttttctcctatatatagacaatttgtttt 398  Q
    |||||| |||||||||| ||||| ||||||||| |||||||   |||||||||| | || |||   || |||||| ||||||||||| ||||||||||||    
T  67303 attagcaaatcaaaatggatcataactcatttatttttcattagccaatcaaaatttatcatgaaatggttttttttcctatatatacacaatttgtttt 67204  T
Q  399 tcattattttcat 411  Q
    |||||||||||||    
T  67203 tcattattttcat 67191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 101157 - 101270
Alignment:
Q  299 attagccaatcaaaatgaatcatgactcatttagttttcatccaccaatcaaaagtgattatgccttga-ttttttctcctatatatagacaatttgttt 397  Q
    ||||||||||||||||| ||||||||||||||| |||||||   |||||||||| |||  ||  | ||| |||||| | |||||||||||||| ||||||    
T  101157 attagccaatcaaaatggatcatgactcatttatttttcataagccaatcaaaattgagcattacatgattttttttttctatatatagacaaattgttt 101256  T
Q  398 ttcattattttcat 411  Q
    | ||||||||||||    
T  101257 tacattattttcat 101270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University