View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7886_low_5 (Length: 414)
Name: NF7886_low_5
Description: NF7886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7886_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 33400376 - 33399979
Alignment:
| Q |
1 |
tagctggaccattgccgtccgcgacagcaaaaaattataacaatggcaacattctcccttcagaagtcttatatatatgttctgttttcaatgtcaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33400376 |
tagctggaccattgccgtccgcgacagcaaaaaattataacaatggcaacattctcccttcagaagtcttatatatatgttctgttttcaatgtcaatca |
33400277 |
T |
|
| Q |
101 |
tatctaagtctaaccaaaacaaagagagcaatcttagtgcttaatacagtgaattgatcaaaatatattatggctctttctcgtgctcttttcctctttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33400276 |
tatctaagtctaaccaaaacaaagagagcaatcttggtgcttaatacagtgaattgatcaaaatatattatggctctttctcgttctcttttcctctttg |
33400177 |
T |
|
| Q |
201 |
ctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtggttggagatgaaagtggttggacacttggggttgattaccaagcttgggc |
300 |
Q |
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| T |
33400176 |
ctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggagatgaaagtggttggacacttggggttgattaccaagcttgggc |
33400077 |
T |
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| Q |
301 |
tgcaaacaaggtctttcgtctcggagacacactcagtaagctcattctactcatattctttctctatctctaatttcttcgctaaatattgagaaact |
398 |
Q |
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| T |
33400076 |
tgcaaacaaggtctttcgtctcggagacacactcagtaacctcattctactcatattctttctctatctctaatttcttcgctaaatattgagaaact |
33399979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 33397282 - 33396946
Alignment:
| Q |
14 |
gccgtccgcgacagcaaaa--aattataacaatggcaacatt----ctcccttcagaagtcttatatatatgttctgttttcaatgtcaatcatatctaa |
107 |
Q |
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| T |
33397282 |
gccgtccgtgacagcaaaattaaatataacaatggcaccattaattctccctacataagtcttatatatatgttctaattttaatgtcaatcatatctaa |
33397183 |
T |
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| Q |
108 |
gtctaaccaaaacaaaga--gagcaatcttagtgctta--atacagtgaattgatcaaaatatattatggctctttctcgtgctcttttcctctttgctc |
203 |
Q |
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|||||||||| | |||||| || || ||| ||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||| |
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| T |
33397182 |
------ccaaaacaaaaaaagagcaacattcgtacttctcataaagtgaattgatcaagcaatattatggctctttctcgtgttctttttctctttgctc |
33397089 |
T |
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| Q |
204 |
tcattgctactatcttctcaaccatggctgtggcaaaagattttgtggttggagatgaaagtggttggacacttggggttgattaccaagcttgggctgc |
303 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| | | ||||||||||| ||| ||||||||| |
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| T |
33397088 |
tcattgctactatcttttcaaccatggctgtggcaaaagattttgtagttggagatgaacgtggttggaaattaggggttgattatcaatattgggctgc |
33396989 |
T |
|
| Q |
304 |
aaacaaggtctttcgtctcggagacacactcagtaagctcatt |
346 |
Q |
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|||||| ||||||||| | || ||||||||||||||||||||| |
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| T |
33396988 |
aaacaaagtctttcgtgtaggggacacactcagtaagctcatt |
33396946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 346
Target Start/End: Complemental strand, 33442423 - 33442246
Alignment:
| Q |
169 |
tatggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtggttggagatgaaagtggt |
268 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |
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| T |
33442423 |
tatggctctttctcgtgctcttttcctctttgctttcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggt |
33442324 |
T |
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| Q |
269 |
tggac-acttggggttgattaccaagcttgggctgcaaacaaggtctttcgtctcggagacacactcagtaagctcatt |
346 |
Q |
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| T |
33442323 |
tggactactt-tgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatt |
33442246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 170 - 346
Target Start/End: Complemental strand, 33452672 - 33452496
Alignment:
| Q |
170 |
atggctctttctcgtgctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtggttggagatgaaagtggtt |
269 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
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| T |
33452672 |
atggctctttctcgtgctctttttctctttgctctcattgcttccatcttctcaaccatggccgtggcaaaagattttgtagttggagatgaaaagggtt |
33452573 |
T |
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| Q |
270 |
ggac-acttggggttgattaccaagcttgggctgcaaacaaggtctttcgtctcggagacacactcagtaagctcatt |
346 |
Q |
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| T |
33452572 |
ggactactt-tgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatt |
33452496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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